data_7VY1
#
_model_server_result.job_id            4PdHqnBTNngNkfNDjLnUKA 
_model_server_result.datetime_utc      '2024-12-21 17:17:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"TA","auth_seq_id":201}' 
#
_entry.id    7VY1 
#
_exptl.entry_id    7VY1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 31 EA N N 
? 31 HA N N 
? 31 LA N N 
? 31 MA N N 
? 31 RA N N 
? 31 TA N N 
? 31 XA N N 
? 31 ZA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 95 V CYS 95 1_555 D SG CYS 115 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 L SG CYS 113 d CYS 113 1_555 L SG CYS 125 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 P SG CYS 33 h CYS 33 1_555 P SG CYS 66 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 P SG CYS 43 h CYS 43 1_555 P SG CYS 56 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 AA SG CYS 88 u CYS 88 1_555 AA SG CYS 100 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 BA SG CYS 68 v CYS 69 1_555 BA SG CYS 79 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VY1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 401 401 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 30 PEE W 1 201 202 PEE PEE . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 31 CDL a 1 201 201 CDL CDL . 
IA 33 PLX a 1 202 101 PLX PLX . 
JA 30 PEE b 1 201 720 PEE PEE . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 30 PEE i 1 402 718 PEE PEE . 
OA 30 PEE j 1 201 101 PEE PEE . 
PA 33 PLX j 1 202 203 PLX PLX . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 713 CDL CDL . 
SA 30 PEE l 1 703 719 PEE PEE . 
TA 31 CDL o 1 201 203 CDL CDL . 
UA 30 PEE r 1 501 202 PEE PEE . 
VA 33 PLX r 1 502 205 PLX PLX . 
WA 33 PLX r 1 503 201 PLX PLX . 
XA 31 CDL r 1 504 712 CDL CDL . 
YA 34 UQ s 1 401 403 UQ UQ . 
ZA 31 CDL u 1 201 102 CDL CDL . 
AB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . TA 31 184.752 210.386 152.477 1 108.32 ? C1 CDL 201 o 1 
HETATM 2 O O1 CDL . . . TA 31 184.947 210.927 153.749 1 105.88 ? O1 CDL 201 o 1 
HETATM 3 C CA2 CDL . . . TA 31 183.448 210.985 151.891 1 109.59 ? CA2 CDL 201 o 1 
HETATM 4 O OA2 CDL . . . TA 31 183.798 212.077 151.054 1 113.59 ? OA2 CDL 201 o 1 
HETATM 5 P PA1 CDL . . . TA 31 182.705 213.309 150.869 1 124.13 ? PA1 CDL 201 o 1 
HETATM 6 O OA3 CDL . . . TA 31 181.307 212.742 150.882 1 112.17 ? OA3 CDL 201 o 1 
HETATM 7 O OA4 CDL . . . TA 31 182.86 214.296 151.987 1 111.29 ? OA4 CDL 201 o 1 
HETATM 8 O OA5 CDL . . . TA 31 182.975 214.072 149.42 1 107.43 ? OA5 CDL 201 o 1 
HETATM 9 C CA3 CDL . . . TA 31 182.803 213.322 148.229 1 106.96 ? CA3 CDL 201 o 1 
HETATM 10 C CA4 CDL . . . TA 31 182.354 214.28 147.139 1 108.43 ? CA4 CDL 201 o 1 
HETATM 11 O OA6 CDL . . . TA 31 182.675 213.747 145.885 1 110.52 ? OA6 CDL 201 o 1 
HETATM 12 C CA5 CDL . . . TA 31 181.806 214.164 144.84 1 109.28 ? CA5 CDL 201 o 1 
HETATM 13 O OA7 CDL . . . TA 31 180.711 214.56 145.096 1 109.47 ? OA7 CDL 201 o 1 
HETATM 14 C C11 CDL . . . TA 31 182.296 214.114 143.359 1 107.22 ? C11 CDL 201 o 1 
HETATM 15 C C12 CDL . . . TA 31 181.699 212.934 142.586 1 106.73 ? C12 CDL 201 o 1 
HETATM 16 C C13 CDL . . . TA 31 182.188 212.883 141.141 1 105.87 ? C13 CDL 201 o 1 
HETATM 17 C CA6 CDL . . . TA 31 183.093 215.617 147.323 1 108.29 ? CA6 CDL 201 o 1 
HETATM 18 O OA8 CDL . . . TA 31 184.23 215.603 146.485 1 110.21 ? OA8 CDL 201 o 1 
HETATM 19 C CA7 CDL . . . TA 31 185.139 216.677 146.732 1 109.34 ? CA7 CDL 201 o 1 
HETATM 20 O OA9 CDL . . . TA 31 185.44 216.954 147.84 1 107.42 ? OA9 CDL 201 o 1 
HETATM 21 C C31 CDL . . . TA 31 185.717 217.478 145.55 1 107.16 ? C31 CDL 201 o 1 
HETATM 22 C C32 CDL . . . TA 31 185.302 216.891 144.204 1 106.62 ? C32 CDL 201 o 1 
HETATM 23 C C33 CDL . . . TA 31 186.377 215.963 143.622 1 107.94 ? C33 CDL 201 o 1 
HETATM 24 C C34 CDL . . . TA 31 185.837 215.073 142.478 1 108.19 ? C34 CDL 201 o 1 
HETATM 25 C C35 CDL . . . TA 31 185.065 215.893 141.412 1 106.01 ? C35 CDL 201 o 1 
HETATM 26 C C36 CDL . . . TA 31 186.015 216.715 140.511 1 105.51 ? C36 CDL 201 o 1 
HETATM 27 C CB2 CDL . . . TA 31 184.696 208.825 152.605 1 108.68 ? CB2 CDL 201 o 1 
HETATM 28 O OB2 CDL . . . TA 31 183.529 208.361 151.939 1 111.26 ? OB2 CDL 201 o 1 
HETATM 29 P PB2 CDL . . . TA 31 183.533 206.799 151.324 1 121.96 ? PB2 CDL 201 o 1 
HETATM 30 O OB3 CDL . . . TA 31 184.518 205.953 152.108 1 114.38 ? OB3 CDL 201 o 1 
HETATM 31 O OB4 CDL . . . TA 31 182.15 206.201 151.439 1 109.44 ? OB4 CDL 201 o 1 
HETATM 32 O OB5 CDL . . . TA 31 183.996 206.833 149.715 1 108.83 ? OB5 CDL 201 o 1 
HETATM 33 C CB3 CDL . . . TA 31 184.969 205.895 149.277 1 104.99 ? CB3 CDL 201 o 1 
HETATM 34 C CB4 CDL . . . TA 31 186.103 206.667 148.591 1 105.15 ? CB4 CDL 201 o 1 
HETATM 35 O OB6 CDL . . . TA 31 185.595 207.851 148.03 1 109.36 ? OB6 CDL 201 o 1 
HETATM 36 C CB5 CDL . . . TA 31 186.224 209.029 148.519 1 105.74 ? CB5 CDL 201 o 1 
HETATM 37 O OB7 CDL . . . TA 31 186.43 209.15 149.679 1 102.18 ? OB7 CDL 201 o 1 
HETATM 38 C C51 CDL . . . TA 31 186.644 210.141 147.537 1 105.2 ? C51 CDL 201 o 1 
HETATM 39 C C52 CDL . . . TA 31 185.434 210.892 146.963 1 105.48 ? C52 CDL 201 o 1 
HETATM 40 C C53 CDL . . . TA 31 185.838 211.902 145.879 1 105.06 ? C53 CDL 201 o 1 
HETATM 41 C C54 CDL . . . TA 31 186.194 211.202 144.552 1 104.8 ? C54 CDL 201 o 1 
HETATM 42 C C55 CDL . . . TA 31 187.398 211.845 143.848 1 105.1 ? C55 CDL 201 o 1 
HETATM 43 C C56 CDL . . . TA 31 187.922 210.96 142.687 1 106.05 ? C56 CDL 201 o 1 
HETATM 44 C C57 CDL . . . TA 31 188.188 211.765 141.399 1 102.55 ? C57 CDL 201 o 1 
HETATM 45 C C58 CDL . . . TA 31 189.6 211.499 140.824 1 103.95 ? C58 CDL 201 o 1 
HETATM 46 C C59 CDL . . . TA 31 189.71 211.891 139.33 1 107.14 ? C59 CDL 201 o 1 
HETATM 47 C C60 CDL . . . TA 31 188.975 210.901 138.409 1 106.8 ? C60 CDL 201 o 1 
HETATM 48 C CB6 CDL . . . TA 31 186.698 205.811 147.482 1 105.53 ? CB6 CDL 201 o 1 
HETATM 49 O OB8 CDL . . . TA 31 186.399 206.435 146.239 1 105.62 ? OB8 CDL 201 o 1 
HETATM 50 C CB7 CDL . . . TA 31 187.334 206.132 145.222 1 103.42 ? CB7 CDL 201 o 1 
HETATM 51 O OB9 CDL . . . TA 31 187.725 205.021 145.089 1 106.32 ? OB9 CDL 201 o 1 
HETATM 52 C C71 CDL . . . TA 31 187.846 207.24 144.278 1 101.46 ? C71 CDL 201 o 1 
HETATM 53 C C72 CDL . . . TA 31 188.837 206.674 143.256 1 104.57 ? C72 CDL 201 o 1 
HETATM 54 C C73 CDL . . . TA 31 188.583 207.194 141.832 1 107.64 ? C73 CDL 201 o 1 
HETATM 55 C C74 CDL . . . TA 31 189.831 207.855 141.226 1 105.58 ? C74 CDL 201 o 1 
HETATM 56 C C75 CDL . . . TA 31 191.134 207.415 141.943 1 103.65 ? C75 CDL 201 o 1 
HETATM 57 C C76 CDL . . . TA 31 192.178 206.828 140.963 1 104.52 ? C76 CDL 201 o 1 
HETATM 58 C C77 CDL . . . TA 31 193.602 207.374 141.267 1 102.26 ? C77 CDL 201 o 1 
HETATM 59 C C78 CDL . . . TA 31 194.599 206.242 141.535 1 103.2 ? C78 CDL 201 o 1 
HETATM 60 C C79 CDL . . . TA 31 194.862 205.404 140.269 1 103.42 ? C79 CDL 201 o 1 
HETATM 61 C C80 CDL . . . TA 31 195.545 206.243 139.161 1 104.78 ? C80 CDL 201 o 1 
HETATM 62 C C81 CDL . . . TA 31 196.812 206.934 139.663 1 103.98 ? C81 CDL 201 o 1 
HETATM 63 C C82 CDL . . . TA 31 197.92 205.906 140.025 1 104.5 ? C82 CDL 201 o 1 
HETATM 64 C C83 CDL . . . TA 31 198.179 204.928 138.867 1 105.12 ? C83 CDL 201 o 1 
HETATM 65 C C84 CDL . . . TA 31 198.904 205.605 137.682 1 102.29 ? C84 CDL 201 o 1 
HETATM 66 C C85 CDL . . . TA 31 200.432 205.428 137.765 1 104.6 ? C85 CDL 201 o 1 
HETATM 67 C C86 CDL . . . TA 31 201.003 204.722 136.534 1 106.94 ? C86 CDL 201 o 1 
HETATM 68 C C87 CDL . . . TA 31 200.094 203.604 136.026 1 104.36 ? C87 CDL 201 o 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           68 
#