data_7VY1
#
_model_server_result.job_id            meoPOSoax20JHjzsZbgsmw 
_model_server_result.datetime_utc      '2024-12-21 16:39:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"ZA","auth_seq_id":201}' 
#
_entry.id    7VY1 
#
_exptl.entry_id    7VY1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 31 EA N N 
? 31 HA N N 
? 31 LA N N 
? 31 MA N N 
? 31 RA N N 
? 31 TA N N 
? 31 XA N N 
? 31 ZA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 95 V CYS 95 1_555 D SG CYS 115 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 L SG CYS 113 d CYS 113 1_555 L SG CYS 125 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 P SG CYS 33 h CYS 33 1_555 P SG CYS 66 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 P SG CYS 43 h CYS 43 1_555 P SG CYS 56 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 AA SG CYS 88 u CYS 88 1_555 AA SG CYS 100 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 BA SG CYS 68 v CYS 69 1_555 BA SG CYS 79 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VY1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 401 401 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 30 PEE W 1 201 202 PEE PEE . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 31 CDL a 1 201 201 CDL CDL . 
IA 33 PLX a 1 202 101 PLX PLX . 
JA 30 PEE b 1 201 720 PEE PEE . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 30 PEE i 1 402 718 PEE PEE . 
OA 30 PEE j 1 201 101 PEE PEE . 
PA 33 PLX j 1 202 203 PLX PLX . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 713 CDL CDL . 
SA 30 PEE l 1 703 719 PEE PEE . 
TA 31 CDL o 1 201 203 CDL CDL . 
UA 30 PEE r 1 501 202 PEE PEE . 
VA 33 PLX r 1 502 205 PLX PLX . 
WA 33 PLX r 1 503 201 PLX PLX . 
XA 31 CDL r 1 504 712 CDL CDL . 
YA 34 UQ s 1 401 403 UQ UQ . 
ZA 31 CDL u 1 201 102 CDL CDL . 
AB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . ZA 31 218.866 163.389 117.725 1 80.56 ? C1 CDL 201 u 1 
HETATM 2 O O1 CDL . . . ZA 31 219.2 163.356 119.08 1 73.28 ? O1 CDL 201 u 1 
HETATM 3 C CA2 CDL . . . ZA 31 218.551 161.937 117.281 1 79.96 ? CA2 CDL 201 u 1 
HETATM 4 O OA2 CDL . . . ZA 31 219.201 161.042 118.171 1 84.59 ? OA2 CDL 201 u 1 
HETATM 5 P PA1 CDL . . . ZA 31 218.946 159.417 117.971 1 100.38 ? PA1 CDL 201 u 1 
HETATM 6 O OA3 CDL . . . ZA 31 217.664 159.205 117.205 1 83.17 ? OA3 CDL 201 u 1 
HETATM 7 O OA4 CDL . . . ZA 31 220.081 158.812 117.206 1 79.18 ? OA4 CDL 201 u 1 
HETATM 8 O OA5 CDL . . . ZA 31 218.835 158.689 119.461 1 81.22 ? OA5 CDL 201 u 1 
HETATM 9 C CA3 CDL . . . ZA 31 220.024 158.222 120.078 1 74.61 ? CA3 CDL 201 u 1 
HETATM 10 C CA4 CDL . . . ZA 31 219.823 158.265 121.584 1 72.86 ? CA4 CDL 201 u 1 
HETATM 11 O OA6 CDL . . . ZA 31 219.769 159.599 122.004 1 74.21 ? OA6 CDL 201 u 1 
HETATM 12 C CA5 CDL . . . ZA 31 219.334 159.759 123.346 1 76.9 ? CA5 CDL 201 u 1 
HETATM 13 O OA7 CDL . . . ZA 31 218.509 159.029 123.795 1 78.71 ? OA7 CDL 201 u 1 
HETATM 14 C C11 CDL . . . ZA 31 219.947 160.885 124.234 1 76.39 ? C11 CDL 201 u 1 
HETATM 15 C C12 CDL . . . ZA 31 218.908 161.943 124.613 1 77.72 ? C12 CDL 201 u 1 
HETATM 16 C C13 CDL . . . ZA 31 218.09 162.398 123.407 1 78.95 ? C13 CDL 201 u 1 
HETATM 17 C C14 CDL . . . ZA 31 218.225 163.91 123.15 1 77.49 ? C14 CDL 201 u 1 
HETATM 18 C C15 CDL . . . ZA 31 217.652 164.325 121.766 1 75.44 ? C15 CDL 201 u 1 
HETATM 19 C C16 CDL . . . ZA 31 216.489 165.337 121.906 1 77.37 ? C16 CDL 201 u 1 
HETATM 20 C C17 CDL . . . ZA 31 216.971 166.81 121.746 1 79.42 ? C17 CDL 201 u 1 
HETATM 21 C C18 CDL . . . ZA 31 215.911 167.832 122.227 1 75.07 ? C18 CDL 201 u 1 
HETATM 22 C C19 CDL . . . ZA 31 215.781 167.874 123.776 1 73.91 ? C19 CDL 201 u 1 
HETATM 23 C C20 CDL . . . ZA 31 217.145 167.721 124.489 1 72.54 ? C20 CDL 201 u 1 
HETATM 24 C C21 CDL . . . ZA 31 216.989 167.492 126.014 1 72.43 ? C21 CDL 201 u 1 
HETATM 25 C C22 CDL . . . ZA 31 218.235 166.799 126.634 1 71 ? C22 CDL 201 u 1 
HETATM 26 C C23 CDL . . . ZA 31 218.039 166.5 128.136 1 72.89 ? C23 CDL 201 u 1 
HETATM 27 C C24 CDL . . . ZA 31 219.301 165.885 128.791 1 76.82 ? C24 CDL 201 u 1 
HETATM 28 C C25 CDL . . . ZA 31 219.557 164.426 128.373 1 76.37 ? C25 CDL 201 u 1 
HETATM 29 C C26 CDL . . . ZA 31 220.65 163.766 129.248 1 74.96 ? C26 CDL 201 u 1 
HETATM 30 C C27 CDL . . . ZA 31 221.08 162.39 128.73 1 75 ? C27 CDL 201 u 1 
HETATM 31 C CA6 CDL . . . ZA 31 221.003 157.561 122.28 1 76.01 ? CA6 CDL 201 u 1 
HETATM 32 O OA8 CDL . . . ZA 31 220.498 156.434 122.967 1 81.28 ? OA8 CDL 201 u 1 
HETATM 33 C CA7 CDL . . . ZA 31 221.29 156.015 124.082 1 80.2 ? CA7 CDL 201 u 1 
HETATM 34 O OA9 CDL . . . ZA 31 222.427 156.33 124.148 1 79.79 ? OA9 CDL 201 u 1 
HETATM 35 C C31 CDL . . . ZA 31 220.659 155.148 125.189 1 76.36 ? C31 CDL 201 u 1 
HETATM 36 C C32 CDL . . . ZA 31 221.258 155.414 126.569 1 75.14 ? C32 CDL 201 u 1 
HETATM 37 C C33 CDL . . . ZA 31 221.089 156.872 127.02 1 73.3 ? C33 CDL 201 u 1 
HETATM 38 C CB2 CDL . . . ZA 31 217.636 164.347 117.559 1 80.66 ? CB2 CDL 201 u 1 
HETATM 39 O OB2 CDL . . . ZA 31 216.506 163.568 117.189 1 84.15 ? OB2 CDL 201 u 1 
HETATM 40 P PB2 CDL . . . ZA 31 215.024 164.338 117.034 1 94.33 ? PB2 CDL 201 u 1 
HETATM 41 O OB3 CDL . . . ZA 31 215.241 165.837 116.959 1 76.67 ? OB3 CDL 201 u 1 
HETATM 42 O OB4 CDL . . . ZA 31 214.353 163.862 115.769 1 82.02 ? OB4 CDL 201 u 1 
HETATM 43 O OB5 CDL . . . ZA 31 214.057 163.978 118.354 1 80.15 ? OB5 CDL 201 u 1 
HETATM 44 C CB3 CDL . . . ZA 31 213.942 164.946 119.386 1 75.6 ? CB3 CDL 201 u 1 
HETATM 45 C CB4 CDL . . . ZA 31 212.459 165.273 119.616 1 73.55 ? CB4 CDL 201 u 1 
HETATM 46 O OB6 CDL . . . ZA 31 212.352 166.157 120.704 1 79.99 ? OB6 CDL 201 u 1 
HETATM 47 C CB5 CDL . . . ZA 31 211.61 167.332 120.411 1 78.81 ? CB5 CDL 201 u 1 
HETATM 48 O OB7 CDL . . . ZA 31 210.859 167.336 119.497 1 81.47 ? OB7 CDL 201 u 1 
HETATM 49 C C51 CDL . . . ZA 31 211.786 168.601 121.269 1 69.75 ? C51 CDL 201 u 1 
HETATM 50 C C52 CDL . . . ZA 31 211.287 168.419 122.71 1 64.82 ? C52 CDL 201 u 1 
HETATM 51 C C53 CDL . . . ZA 31 212.161 169.183 123.716 1 73.06 ? C53 CDL 201 u 1 
HETATM 52 C C54 CDL . . . ZA 31 211.681 169.027 125.176 1 78.79 ? C54 CDL 201 u 1 
HETATM 53 C C55 CDL . . . ZA 31 210.194 168.655 125.286 1 81.81 ? C55 CDL 201 u 1 
HETATM 54 C C56 CDL . . . ZA 31 209.331 169.846 125.778 1 80.54 ? C56 CDL 201 u 1 
HETATM 55 C C57 CDL . . . ZA 31 209.23 169.901 127.315 1 73.66 ? C57 CDL 201 u 1 
HETATM 56 C C58 CDL . . . ZA 31 210.12 171.018 127.912 1 72.29 ? C58 CDL 201 u 1 
HETATM 57 C C59 CDL . . . ZA 31 210.483 170.75 129.392 1 74.34 ? C59 CDL 201 u 1 
HETATM 58 C C60 CDL . . . ZA 31 211.134 169.371 129.598 1 77.36 ? C60 CDL 201 u 1 
HETATM 59 C C61 CDL . . . ZA 31 211.121 168.931 131.087 1 76.37 ? C61 CDL 201 u 1 
HETATM 60 C C62 CDL . . . ZA 31 210.483 167.541 131.294 1 73.08 ? C62 CDL 201 u 1 
HETATM 61 C C63 CDL . . . ZA 31 209.851 167.393 132.685 1 72.82 ? C63 CDL 201 u 1 
HETATM 62 C C64 CDL . . . ZA 31 210.808 167.815 133.811 1 73.64 ? C64 CDL 201 u 1 
HETATM 63 C CB6 CDL . . . ZA 31 211.688 163.998 119.928 1 71.5 ? CB6 CDL 201 u 1 
HETATM 64 O OB8 CDL . . . ZA 31 212.213 163.435 121.125 1 79.66 ? OB8 CDL 201 u 1 
HETATM 65 C CB7 CDL . . . ZA 31 211.289 163.411 122.198 1 78.94 ? CB7 CDL 201 u 1 
HETATM 66 O OB9 CDL . . . ZA 31 210.131 163.55 121.983 1 80.51 ? OB9 CDL 201 u 1 
HETATM 67 C C71 CDL . . . ZA 31 211.777 163.186 123.648 1 71.56 ? C71 CDL 201 u 1 
HETATM 68 C C72 CDL . . . ZA 31 211.896 164.49 124.446 1 71.01 ? C72 CDL 201 u 1 
HETATM 69 C C73 CDL . . . ZA 31 213.107 164.509 125.395 1 71.05 ? C73 CDL 201 u 1 
HETATM 70 C C74 CDL . . . ZA 31 214.029 163.29 125.23 1 69.03 ? C74 CDL 201 u 1 
HETATM 71 C C75 CDL . . . ZA 31 214.791 162.964 126.542 1 77.5 ? C75 CDL 201 u 1 
HETATM 72 C C76 CDL . . . ZA 31 215.762 161.764 126.397 1 75.2 ? C76 CDL 201 u 1 
HETATM 73 C C77 CDL . . . ZA 31 216.589 161.504 127.693 1 73.25 ? C77 CDL 201 u 1 
HETATM 74 C C78 CDL . . . ZA 31 215.965 162.162 128.932 1 68.54 ? C78 CDL 201 u 1 
HETATM 75 C C79 CDL . . . ZA 31 216.988 162.361 130.067 1 73.69 ? C79 CDL 201 u 1 
HETATM 76 C C80 CDL . . . ZA 31 216.41 163.195 131.239 1 75.46 ? C80 CDL 201 u 1 
HETATM 77 C C81 CDL . . . ZA 31 216.15 164.65 130.85 1 73.95 ? C81 CDL 201 u 1 
HETATM 78 C C82 CDL . . . ZA 31 215.829 165.539 132.087 1 71.04 ? C82 CDL 201 u 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    56 
_model_server_stats.query_time_ms           439 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           78 
#