data_7VY1 # _model_server_result.job_id JBzSlbMdho77IS77ymrEGw _model_server_result.datetime_utc '2024-12-21 16:51:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":202}' # _entry.id 7VY1 # _exptl.entry_id 7VY1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 EA N N ? 31 HA N N ? 31 LA N N ? 31 MA N N ? 31 RA N N ? 31 TA N N ? 31 XA N N ? 31 ZA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 95 V CYS 95 1_555 D SG CYS 115 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 L SG CYS 113 d CYS 113 1_555 L SG CYS 125 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 P SG CYS 33 h CYS 33 1_555 P SG CYS 66 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 P SG CYS 43 h CYS 43 1_555 P SG CYS 56 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 AA SG CYS 88 u CYS 88 1_555 AA SG CYS 100 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 BA SG CYS 68 v CYS 69 1_555 BA SG CYS 79 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VY1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE U 1 401 401 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 30 PEE W 1 201 202 PEE PEE . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 31 CDL a 1 201 201 CDL CDL . IA 33 PLX a 1 202 101 PLX PLX . JA 30 PEE b 1 201 720 PEE PEE . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 31 CDL i 1 401 401 CDL CDL . NA 30 PEE i 1 402 718 PEE PEE . OA 30 PEE j 1 201 101 PEE PEE . PA 33 PLX j 1 202 203 PLX PLX . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 713 CDL CDL . SA 30 PEE l 1 703 719 PEE PEE . TA 31 CDL o 1 201 203 CDL CDL . UA 30 PEE r 1 501 202 PEE PEE . VA 33 PLX r 1 502 205 PLX PLX . WA 33 PLX r 1 503 201 PLX PLX . XA 31 CDL r 1 504 712 CDL CDL . YA 34 UQ s 1 401 403 UQ UQ . ZA 31 CDL u 1 201 102 CDL CDL . AB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . LA 31 215.845 160.311 151.616 1 81.86 ? C1 CDL 202 g 1 HETATM 2 O O1 CDL . . . LA 31 215.512 160.185 150.267 1 79.62 ? O1 CDL 202 g 1 HETATM 3 C CA2 CDL . . . LA 31 215.088 161.543 152.174 1 80 ? CA2 CDL 202 g 1 HETATM 4 O OA2 CDL . . . LA 31 216.023 162.408 152.799 1 74.87 ? OA2 CDL 202 g 1 HETATM 5 P PA1 CDL . . . LA 31 215.47 163.369 154.029 1 94.45 ? PA1 CDL 202 g 1 HETATM 6 O OA3 CDL . . . LA 31 216.278 163.112 155.275 1 82.81 ? OA3 CDL 202 g 1 HETATM 7 O OA4 CDL . . . LA 31 214.033 163.039 154.289 1 84.72 ? OA4 CDL 202 g 1 HETATM 8 O OA5 CDL . . . LA 31 215.596 164.967 153.595 1 84.17 ? OA5 CDL 202 g 1 HETATM 9 C CA3 CDL . . . LA 31 214.463 165.807 153.754 1 78.51 ? CA3 CDL 202 g 1 HETATM 10 C CA4 CDL . . . LA 31 214.076 166.352 152.387 1 77.46 ? CA4 CDL 202 g 1 HETATM 11 O OA6 CDL . . . LA 31 212.902 167.108 152.491 1 79.77 ? OA6 CDL 202 g 1 HETATM 12 C CA5 CDL . . . LA 31 213.122 168.501 152.662 1 80.17 ? CA5 CDL 202 g 1 HETATM 13 O OA7 CDL . . . LA 31 214.223 168.945 152.57 1 79.62 ? OA7 CDL 202 g 1 HETATM 14 C C11 CDL . . . LA 31 211.918 169.442 152.975 1 81.23 ? C11 CDL 202 g 1 HETATM 15 C C12 CDL . . . LA 31 211.776 170.6 151.981 1 78.25 ? C12 CDL 202 g 1 HETATM 16 C C13 CDL . . . LA 31 212.106 170.203 150.547 1 68.51 ? C13 CDL 202 g 1 HETATM 17 C C14 CDL . . . LA 31 212.628 171.399 149.729 1 73.67 ? C14 CDL 202 g 1 HETATM 18 C C15 CDL . . . LA 31 211.659 171.773 148.574 1 74.94 ? C15 CDL 202 g 1 HETATM 19 C C16 CDL . . . LA 31 211.198 170.516 147.802 1 76.53 ? C16 CDL 202 g 1 HETATM 20 C C17 CDL . . . LA 31 211.254 170.699 146.257 1 67.88 ? C17 CDL 202 g 1 HETATM 21 C C18 CDL . . . LA 31 211.108 169.345 145.521 1 68.9 ? C18 CDL 202 g 1 HETATM 22 C C19 CDL . . . LA 31 211.103 169.503 143.976 1 71.97 ? C19 CDL 202 g 1 HETATM 23 C C20 CDL . . . LA 31 212.198 168.636 143.31 1 77.29 ? C20 CDL 202 g 1 HETATM 24 C C21 CDL . . . LA 31 212.342 168.917 141.791 1 76.77 ? C21 CDL 202 g 1 HETATM 25 C C22 CDL . . . LA 31 213.705 168.424 141.229 1 75.64 ? C22 CDL 202 g 1 HETATM 26 C C23 CDL . . . LA 31 214.051 167 141.717 1 76.03 ? C23 CDL 202 g 1 HETATM 27 C C24 CDL . . . LA 31 215.441 166.528 141.223 1 75.45 ? C24 CDL 202 g 1 HETATM 28 C C25 CDL . . . LA 31 215.902 165.258 141.956 1 72.81 ? C25 CDL 202 g 1 HETATM 29 C C26 CDL . . . LA 31 215.774 165.405 143.487 1 68.26 ? C26 CDL 202 g 1 HETATM 30 C C27 CDL . . . LA 31 216.047 164.086 144.215 1 69.22 ? C27 CDL 202 g 1 HETATM 31 C CA6 CDL . . . LA 31 213.823 165.183 151.419 1 70.89 ? CA6 CDL 202 g 1 HETATM 32 O OA8 CDL . . . LA 31 212.91 165.634 150.441 1 71.37 ? OA8 CDL 202 g 1 HETATM 33 C CA7 CDL . . . LA 31 213.378 165.478 149.101 1 76.74 ? CA7 CDL 202 g 1 HETATM 34 O OA9 CDL . . . LA 31 214.501 165.174 148.9 1 82.94 ? OA9 CDL 202 g 1 HETATM 35 C C31 CDL . . . LA 31 212.418 165.712 147.922 1 73.65 ? C31 CDL 202 g 1 HETATM 36 C C32 CDL . . . LA 31 212.68 164.765 146.756 1 72.84 ? C32 CDL 202 g 1 HETATM 37 C C33 CDL . . . LA 31 212.512 165.466 145.401 1 77.07 ? C33 CDL 202 g 1 HETATM 38 C C34 CDL . . . LA 31 211.034 165.536 144.954 1 71.85 ? C34 CDL 202 g 1 HETATM 39 C C35 CDL . . . LA 31 210.733 164.543 143.803 1 72.24 ? C35 CDL 202 g 1 HETATM 40 C C36 CDL . . . LA 31 209.741 165.121 142.768 1 74.76 ? C36 CDL 202 g 1 HETATM 41 C C37 CDL . . . LA 31 209.399 164.106 141.665 1 72.14 ? C37 CDL 202 g 1 HETATM 42 C C38 CDL . . . LA 31 209.908 164.553 140.29 1 74.66 ? C38 CDL 202 g 1 HETATM 43 C C39 CDL . . . LA 31 209.436 165.973 139.929 1 77.53 ? C39 CDL 202 g 1 HETATM 44 C C40 CDL . . . LA 31 210.569 166.844 139.342 1 76.92 ? C40 CDL 202 g 1 HETATM 45 C C41 CDL . . . LA 31 210.033 168.199 138.762 1 75.71 ? C41 CDL 202 g 1 HETATM 46 C C42 CDL . . . LA 31 210.916 168.728 137.599 1 78.01 ? C42 CDL 202 g 1 HETATM 47 C C43 CDL . . . LA 31 210.28 169.942 136.862 1 75.34 ? C43 CDL 202 g 1 HETATM 48 C C44 CDL . . . LA 31 210.814 171.308 137.37 1 75.09 ? C44 CDL 202 g 1 HETATM 49 C C45 CDL . . . LA 31 210.024 171.844 138.561 1 74.4 ? C45 CDL 202 g 1 HETATM 50 C C46 CDL . . . LA 31 210.736 171.592 139.903 1 73.07 ? C46 CDL 202 g 1 HETATM 51 C C47 CDL . . . LA 31 209.751 171.347 141.041 1 73.84 ? C47 CDL 202 g 1 HETATM 52 C CB2 CDL . . . LA 31 217.402 160.459 151.709 1 78.73 ? CB2 CDL 202 g 1 HETATM 53 O OB2 CDL . . . LA 31 217.995 159.347 151.053 1 75.42 ? OB2 CDL 202 g 1 HETATM 54 P PB2 CDL . . . LA 31 219.557 159.527 150.474 1 95.93 ? PB2 CDL 202 g 1 HETATM 55 O OB3 CDL . . . LA 31 220.532 159.43 151.63 1 81.09 ? OB3 CDL 202 g 1 HETATM 56 O OB4 CDL . . . LA 31 219.858 158.435 149.476 1 83.5 ? OB4 CDL 202 g 1 HETATM 57 O OB5 CDL . . . LA 31 219.699 161.032 149.746 1 84.08 ? OB5 CDL 202 g 1 HETATM 58 C CB3 CDL . . . LA 31 220.044 161.107 148.369 1 74.67 ? CB3 CDL 202 g 1 HETATM 59 C CB4 CDL . . . LA 31 218.779 160.862 147.532 1 74.97 ? CB4 CDL 202 g 1 HETATM 60 O OB6 CDL . . . LA 31 218.951 161.368 146.229 1 78.84 ? OB6 CDL 202 g 1 HETATM 61 C CB5 CDL . . . LA 31 219.44 160.417 145.289 1 74.04 ? CB5 CDL 202 g 1 HETATM 62 O OB7 CDL . . . LA 31 220.371 159.739 145.562 1 77.48 ? OB7 CDL 202 g 1 HETATM 63 C C51 CDL . . . LA 31 218.761 160.264 143.914 1 68.69 ? C51 CDL 202 g 1 HETATM 64 C C52 CDL . . . LA 31 219.138 161.394 142.942 1 70.46 ? C52 CDL 202 g 1 HETATM 65 C C53 CDL . . . LA 31 219.309 160.883 141.504 1 78.38 ? C53 CDL 202 g 1 HETATM 66 C C54 CDL . . . LA 31 220.268 159.677 141.429 1 75.36 ? C54 CDL 202 g 1 HETATM 67 C C55 CDL . . . LA 31 221.107 159.671 140.142 1 76.27 ? C55 CDL 202 g 1 HETATM 68 C C56 CDL . . . LA 31 222.079 158.463 140.082 1 76.2 ? C56 CDL 202 g 1 HETATM 69 C C57 CDL . . . LA 31 222.312 157.97 138.64 1 75.8 ? C57 CDL 202 g 1 HETATM 70 C C58 CDL . . . LA 31 223.453 158.749 137.943 1 78.93 ? C58 CDL 202 g 1 HETATM 71 C C59 CDL . . . LA 31 224.68 157.865 137.612 1 75 ? C59 CDL 202 g 1 HETATM 72 C C60 CDL . . . LA 31 224.66 157.383 136.15 1 75.77 ? C60 CDL 202 g 1 HETATM 73 C C61 CDL . . . LA 31 224.763 158.553 135.135 1 76.08 ? C61 CDL 202 g 1 HETATM 74 C C62 CDL . . . LA 31 223.463 158.741 134.323 1 76.01 ? C62 CDL 202 g 1 HETATM 75 C C63 CDL . . . LA 31 223.729 158.99 132.832 1 78.56 ? C63 CDL 202 g 1 HETATM 76 C C64 CDL . . . LA 31 224.052 157.695 132.071 1 77.99 ? C64 CDL 202 g 1 HETATM 77 C C65 CDL . . . LA 31 224.984 157.934 130.89 1 81.62 ? C65 CDL 202 g 1 HETATM 78 C C66 CDL . . . LA 31 226.395 158.315 131.326 1 79.87 ? C66 CDL 202 g 1 HETATM 79 C C67 CDL . . . LA 31 227.465 157.659 130.455 1 75.39 ? C67 CDL 202 g 1 HETATM 80 C CB6 CDL . . . LA 31 217.594 161.562 148.186 1 72.9 ? CB6 CDL 202 g 1 HETATM 81 O OB8 CDL . . . LA 31 216.79 162.122 147.153 1 85.12 ? OB8 CDL 202 g 1 HETATM 82 C CB7 CDL . . . LA 31 215.405 161.863 147.297 1 79.01 ? CB7 CDL 202 g 1 HETATM 83 O OB9 CDL . . . LA 31 214.767 162.466 148.094 1 80.37 ? OB9 CDL 202 g 1 HETATM 84 C C71 CDL . . . LA 31 214.726 160.789 146.418 1 72.81 ? C71 CDL 202 g 1 HETATM 85 C C72 CDL . . . LA 31 213.408 161.279 145.806 1 71.45 ? C72 CDL 202 g 1 HETATM 86 C C73 CDL . . . LA 31 213.158 160.66 144.423 1 71.22 ? C73 CDL 202 g 1 HETATM 87 C C74 CDL . . . LA 31 213.406 161.661 143.287 1 77.34 ? C74 CDL 202 g 1 HETATM 88 C C75 CDL . . . LA 31 214.418 161.121 142.243 1 75.54 ? C75 CDL 202 g 1 HETATM 89 C C76 CDL . . . LA 31 213.813 161.064 140.818 1 71.43 ? C76 CDL 202 g 1 HETATM 90 C C77 CDL . . . LA 31 212.784 162.204 140.57 1 68.85 ? C77 CDL 202 g 1 HETATM 91 C C78 CDL . . . LA 31 213.039 162.937 139.246 1 72.52 ? C78 CDL 202 g 1 HETATM 92 C C79 CDL . . . LA 31 214.537 162.984 138.875 1 78.72 ? C79 CDL 202 g 1 HETATM 93 C C80 CDL . . . LA 31 214.837 164.035 137.776 1 78.24 ? C80 CDL 202 g 1 HETATM 94 C C81 CDL . . . LA 31 214.036 165.322 137.968 1 76.28 ? C81 CDL 202 g 1 HETATM 95 C C82 CDL . . . LA 31 214.434 166.414 136.934 1 75.97 ? C82 CDL 202 g 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 95 #