data_7VY1
#
_model_server_result.job_id            Ef7S-PMZIDUAp6xBM0V8oA 
_model_server_result.datetime_utc      '2024-12-30 17:34:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"PA","auth_seq_id":202}' 
#
_entry.id    7VY1 
#
_exptl.entry_id    7VY1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.132 
_entity.id                          33 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 33 IA N N 
? 33 KA N N 
? 33 PA N N 
? 33 VA N N 
? 33 WA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 95 V CYS 95 1_555 D SG CYS 115 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 L SG CYS 113 d CYS 113 1_555 L SG CYS 125 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 P SG CYS 33 h CYS 33 1_555 P SG CYS 66 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 P SG CYS 43 h CYS 43 1_555 P SG CYS 56 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 AA SG CYS 88 u CYS 88 1_555 AA SG CYS 100 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 BA SG CYS 68 v CYS 69 1_555 BA SG CYS 79 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C42 H89 N O8 P 1' 
_chem_comp.formula_weight    767.132 
_chem_comp.id                PLX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VY1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 401 401 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 30 PEE W 1 201 202 PEE PEE . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 31 CDL a 1 201 201 CDL CDL . 
IA 33 PLX a 1 202 101 PLX PLX . 
JA 30 PEE b 1 201 720 PEE PEE . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 30 PEE i 1 402 718 PEE PEE . 
OA 30 PEE j 1 201 101 PEE PEE . 
PA 33 PLX j 1 202 203 PLX PLX . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 713 CDL CDL . 
SA 30 PEE l 1 703 719 PEE PEE . 
TA 31 CDL o 1 201 203 CDL CDL . 
UA 30 PEE r 1 501 202 PEE PEE . 
VA 33 PLX r 1 502 205 PLX PLX . 
WA 33 PLX r 1 503 201 PLX PLX . 
XA 31 CDL r 1 504 712 CDL CDL . 
YA 34 UQ s 1 401 403 UQ UQ . 
ZA 31 CDL u 1 201 102 CDL CDL . 
AB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 PLX . . . PA 33 181.867 135.392 126.895 1 85.88 ? C23 PLX 202 j 1 
HETATM 2 C C22 PLX . . . PA 33 182.693 135.906 128.114 1 89.73 ? C22 PLX 202 j 1 
HETATM 3 C C21 PLX . . . PA 33 182.649 134.914 129.322 1 91.82 ? C21 PLX 202 j 1 
HETATM 4 C C20 PLX . . . PA 33 183.514 135.408 130.53 1 89.74 ? C20 PLX 202 j 1 
HETATM 5 C C19 PLX . . . PA 33 183.185 136.885 130.935 1 89.49 ? C19 PLX 202 j 1 
HETATM 6 C C18 PLX . . . PA 33 181.779 137.01 131.63 1 91.38 ? C18 PLX 202 j 1 
HETATM 7 C C17 PLX . . . PA 33 181.368 138.51 131.913 1 90.01 ? C17 PLX 202 j 1 
HETATM 8 C C16 PLX . . . PA 33 180.152 138.618 132.898 1 86.08 ? C16 PLX 202 j 1 
HETATM 9 C C15 PLX . . . PA 33 179.154 137.408 132.743 1 89.35 ? C15 PLX 202 j 1 
HETATM 10 C C14 PLX . . . PA 33 177.926 137.759 131.839 1 87.57 ? C14 PLX 202 j 1 
HETATM 11 C C13 PLX . . . PA 33 178.2 137.446 130.32 1 87.79 ? C13 PLX 202 j 1 
HETATM 12 C C12 PLX . . . PA 33 177.577 136.085 129.858 1 89.21 ? C12 PLX 202 j 1 
HETATM 13 C C11 PLX . . . PA 33 177.222 136.085 128.332 1 86.77 ? C11 PLX 202 j 1 
HETATM 14 C C10 PLX . . . PA 33 175.716 135.764 128.073 1 86.8 ? C10 PLX 202 j 1 
HETATM 15 C C9 PLX . . . PA 33 175.093 136.661 126.942 1 85.3 ? C9 PLX 202 j 1 
HETATM 16 C C8 PLX . . . PA 33 173.657 136.17 126.516 1 87.48 ? C8 PLX 202 j 1 
HETATM 17 C C7 PLX . . . PA 33 173.535 135.871 124.971 1 90.81 ? C7 PLX 202 j 1 
HETATM 18 C C6 PLX . . . PA 33 174.238 134.547 124.565 1 94.64 ? C6 PLX 202 j 1 
HETATM 19 O O7 PLX . . . PA 33 174.527 133.813 125.695 1 95.29 ? O7 PLX 202 j 1 
HETATM 20 O O6 PLX . . . PA 33 173.406 133.795 123.691 1 95.19 ? O6 PLX 202 j 1 
HETATM 21 C C4 PLX . . . PA 33 172.226 133.282 124.26 1 89.89 ? C4 PLX 202 j 1 
HETATM 22 C C3 PLX . . . PA 33 171.077 133.429 123.25 1 86.87 ? C3 PLX 202 j 1 
HETATM 23 O O4 PLX . . . PA 33 170.55 132.127 122.971 1 92.76 ? O4 PLX 202 j 1 
HETATM 24 P P1 PLX . . . PA 33 169.924 131.819 121.447 1 112.75 ? P1 PLX 202 j 1 
HETATM 25 O O1 PLX . . . PA 33 169.16 133.183 120.862 1 95.91 ? O1 PLX 202 j 1 
HETATM 26 C C2 PLX . . . PA 33 167.773 133.372 121.15 1 89.79 ? C2 PLX 202 j 1 
HETATM 27 C C1 PLX . . . PA 33 167.269 134.602 120.319 1 87.45 ? C1 PLX 202 j 1 
HETATM 28 N N1 PLX . . . PA 33 166.658 134.165 119.018 1 90.29 ? N1 PLX 202 j 1 
HETATM 29 C C1C PLX . . . PA 33 165.255 133.81 119.301 1 86.7 ? C1C PLX 202 j 1 
HETATM 30 C C1B PLX . . . PA 33 166.729 135.343 118.104 1 92.46 ? C1B PLX 202 j 1 
HETATM 31 C C1A PLX . . . PA 33 167.242 133.02 118.277 1 89.18 ? C1A PLX 202 j 1 
HETATM 32 O O2 PLX . . . PA 33 168.934 130.677 121.515 1 95.18 ? O2 PLX 202 j 1 
HETATM 33 C C5 PLX . . . PA 33 172.413 131.788 124.59 1 91.79 ? C5 PLX 202 j 1 
HETATM 34 O O8 PLX . . . PA 33 171.717 131.501 125.804 1 90.48 ? O8 PLX 202 j 1 
HETATM 35 C C24 PLX . . . PA 33 172.51 130.854 126.774 1 89.79 ? C24 PLX 202 j 1 
HETATM 36 O O9 PLX . . . PA 33 171.797 129.805 127.338 1 88.64 ? O9 PLX 202 j 1 
HETATM 37 C C25 PLX . . . PA 33 172.894 131.86 127.877 1 84.33 ? C25 PLX 202 j 1 
HETATM 38 C C26 PLX . . . PA 33 173.109 131.161 129.256 1 87.56 ? C26 PLX 202 j 1 
HETATM 39 C C27 PLX . . . PA 33 174.007 132.014 130.204 1 89.07 ? C27 PLX 202 j 1 
HETATM 40 C C28 PLX . . . PA 33 173.32 132.295 131.583 1 85.7 ? C28 PLX 202 j 1 
HETATM 41 C C29 PLX . . . PA 33 173.717 131.245 132.67 1 84.98 ? C29 PLX 202 j 1 
HETATM 42 C C30 PLX . . . PA 33 174.845 131.78 133.631 1 89.03 ? C30 PLX 202 j 1 
HETATM 43 C C31 PLX . . . PA 33 175.029 133.342 133.545 1 86 ? C31 PLX 202 j 1 
HETATM 44 C C32 PLX . . . PA 33 175.975 133.893 134.682 1 91.62 ? C32 PLX 202 j 1 
HETATM 45 C C33 PLX . . . PA 33 176.589 135.306 134.328 1 91.42 ? C33 PLX 202 j 1 
HETATM 46 C C34 PLX . . . PA 33 176.813 136.199 135.613 1 89.09 ? C34 PLX 202 j 1 
HETATM 47 C C35 PLX . . . PA 33 175.472 136.426 136.429 1 85.74 ? C35 PLX 202 j 1 
HETATM 48 C C36 PLX . . . PA 33 175.707 136.409 137.98 1 87.53 ? C36 PLX 202 j 1 
HETATM 49 C C37 PLX . . . PA 33 176.615 135.211 138.437 1 92.39 ? C37 PLX 202 j 1 
HETATM 50 C C38 PLX . . . PA 33 175.888 133.832 138.323 1 90.28 ? C38 PLX 202 j 1 
HETATM 51 C C39 PLX . . . PA 33 176.746 132.665 138.876 1 89.51 ? C39 PLX 202 j 1 
HETATM 52 O O3 PLX . . . PA 33 171.053 131.441 120.51 1 95.11 ? O3 PLX 202 j 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    112 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           52 
#