data_7VY1 # _model_server_result.job_id Ret0T53XiaqKKKFDSzfouw _model_server_result.datetime_utc '2024-12-21 16:57:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AB","auth_seq_id":401}' # _entry.id 7VY1 # _exptl.entry_id 7VY1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 35 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 35 _struct_asym.id AB _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 95 V CYS 95 1_555 D SG CYS 115 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 L SG CYS 113 d CYS 113 1_555 L SG CYS 125 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 P SG CYS 33 h CYS 33 1_555 P SG CYS 66 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 P SG CYS 43 h CYS 43 1_555 P SG CYS 56 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 AA SG CYS 88 u CYS 88 1_555 AA SG CYS 100 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 BA SG CYS 68 v CYS 69 1_555 BA SG CYS 79 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VY1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE U 1 401 401 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 30 PEE W 1 201 202 PEE PEE . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 31 CDL a 1 201 201 CDL CDL . IA 33 PLX a 1 202 101 PLX PLX . JA 30 PEE b 1 201 720 PEE PEE . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 31 CDL i 1 401 401 CDL CDL . NA 30 PEE i 1 402 718 PEE PEE . OA 30 PEE j 1 201 101 PEE PEE . PA 33 PLX j 1 202 203 PLX PLX . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 713 CDL CDL . SA 30 PEE l 1 703 719 PEE PEE . TA 31 CDL o 1 201 203 CDL CDL . UA 30 PEE r 1 501 202 PEE PEE . VA 33 PLX r 1 502 205 PLX PLX . WA 33 PLX r 1 503 201 PLX PLX . XA 31 CDL r 1 504 712 CDL CDL . YA 34 UQ s 1 401 403 UQ UQ . ZA 31 CDL u 1 201 102 CDL CDL . AB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . AB 35 205.545 149.839 191.464 0.59 85.76 ? PB ADP 401 w 1 HETATM 2 O O1B ADP . . . AB 35 205.811 149.554 190.011 0.59 80.5 ? O1B ADP 401 w 1 HETATM 3 O O2B ADP . . . AB 35 204.468 148.922 191.961 0.59 74.47 ? O2B ADP 401 w 1 HETATM 4 O O3B ADP . . . AB 35 206.816 149.614 192.274 0.59 75.22 ? O3B ADP 401 w 1 HETATM 5 P PA ADP . . . AB 35 203.636 151.986 191.013 0.59 81.35 ? PA ADP 401 w 1 HETATM 6 O O1A ADP . . . AB 35 202.784 150.84 190.546 0.59 76.32 ? O1A ADP 401 w 1 HETATM 7 O O2A ADP . . . AB 35 202.9 152.757 192.079 0.59 80.03 ? O2A ADP 401 w 1 HETATM 8 O O3A ADP . . . AB 35 205.057 151.396 191.635 0.59 79.73 ? O3A ADP 401 w 1 HETATM 9 O O5' ADP . . . AB 35 203.964 152.978 189.739 0.59 75.22 ? O5' ADP 401 w 1 HETATM 10 C C5' ADP . . . AB 35 205.304 153.103 189.32 0.59 73.6 ? C5' ADP 401 w 1 HETATM 11 C C4' ADP . . . AB 35 205.603 154.585 189.036 0.59 75.51 ? C4' ADP 401 w 1 HETATM 12 O O4' ADP . . . AB 35 204.932 155.042 187.638 0.59 76.85 ? O4' ADP 401 w 1 HETATM 13 C C3' ADP . . . AB 35 205.115 155.342 189.971 0.59 77.18 ? C3' ADP 401 w 1 HETATM 14 O O3' ADP . . . AB 35 206.235 156.008 190.713 0.59 76.89 ? O3' ADP 401 w 1 HETATM 15 C C2' ADP . . . AB 35 204.206 156.387 189.257 0.59 76.09 ? C2' ADP 401 w 1 HETATM 16 O O2' ADP . . . AB 35 204.399 157.632 189.739 0.59 76.19 ? O2' ADP 401 w 1 HETATM 17 C C1' ADP . . . AB 35 204.641 156.309 187.798 0.59 76.73 ? C1' ADP 401 w 1 HETATM 18 N N9 ADP . . . AB 35 203.533 156.721 186.875 0.59 75.39 ? N9 ADP 401 w 1 HETATM 19 C C8 ADP . . . AB 35 202.806 155.909 186.141 0.59 74.37 ? C8 ADP 401 w 1 HETATM 20 N N7 ADP . . . AB 35 201.92 156.628 185.444 0.59 74.83 ? N7 ADP 401 w 1 HETATM 21 C C5 ADP . . . AB 35 202.094 157.925 185.745 0.59 75.74 ? C5 ADP 401 w 1 HETATM 22 C C6 ADP . . . AB 35 201.46 159.133 185.326 0.59 75.23 ? C6 ADP 401 w 1 HETATM 23 N N6 ADP . . . AB 35 200.353 159.115 184.349 0.59 76.19 ? N6 ADP 401 w 1 HETATM 24 N N1 ADP . . . AB 35 201.897 160.281 185.841 0.59 72.14 ? N1 ADP 401 w 1 HETATM 25 C C2 ADP . . . AB 35 202.891 160.315 186.719 0.59 74.31 ? C2 ADP 401 w 1 HETATM 26 N N3 ADP . . . AB 35 203.504 159.202 187.132 0.59 74.79 ? N3 ADP 401 w 1 HETATM 27 C C4 ADP . . . AB 35 203.124 157.995 186.66 0.59 75.23 ? C4 ADP 401 w 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #