data_7VY1 # _model_server_result.job_id jKNgi5yACU4fQ5nfWNrk6A _model_server_result.datetime_utc '2024-12-21 17:06:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":401}' # _entry.id 7VY1 # _exptl.entry_id 7VY1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 FA N N ? 30 JA N N ? 30 NA N N ? 30 OA N N ? 30 QA N N ? 30 SA N N ? 30 UA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 95 V CYS 95 1_555 D SG CYS 115 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 L SG CYS 113 d CYS 113 1_555 L SG CYS 125 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 P SG CYS 33 h CYS 33 1_555 P SG CYS 66 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 P SG CYS 43 h CYS 43 1_555 P SG CYS 56 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 AA SG CYS 88 u CYS 88 1_555 AA SG CYS 100 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 BA SG CYS 68 v CYS 69 1_555 BA SG CYS 79 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 7VY1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE U 1 401 401 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 30 PEE W 1 201 202 PEE PEE . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 31 CDL a 1 201 201 CDL CDL . IA 33 PLX a 1 202 101 PLX PLX . JA 30 PEE b 1 201 720 PEE PEE . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 31 CDL i 1 401 401 CDL CDL . NA 30 PEE i 1 402 718 PEE PEE . OA 30 PEE j 1 201 101 PEE PEE . PA 33 PLX j 1 202 203 PLX PLX . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 713 CDL CDL . SA 30 PEE l 1 703 719 PEE PEE . TA 31 CDL o 1 201 203 CDL CDL . UA 30 PEE r 1 501 202 PEE PEE . VA 33 PLX r 1 502 205 PLX PLX . WA 33 PLX r 1 503 201 PLX PLX . XA 31 CDL r 1 504 712 CDL CDL . YA 34 UQ s 1 401 403 UQ UQ . ZA 31 CDL u 1 201 102 CDL CDL . AB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . DA 30 160.385 111.171 141.661 1 54.49 ? C27 PEE 401 U 1 HETATM 2 C C26 PEE . . . DA 30 160.23 112.69 141.683 1 59.99 ? C26 PEE 401 U 1 HETATM 3 C C25 PEE . . . DA 30 159.163 113.153 142.666 1 58.43 ? C25 PEE 401 U 1 HETATM 4 C C24 PEE . . . DA 30 159.194 114.665 142.875 1 56.37 ? C24 PEE 401 U 1 HETATM 5 C C23 PEE . . . DA 30 159.298 115.04 144.351 1 56.59 ? C23 PEE 401 U 1 HETATM 6 C C22 PEE . . . DA 30 157.947 115.418 144.954 1 58.72 ? C22 PEE 401 U 1 HETATM 7 C C21 PEE . . . DA 30 157.713 114.756 146.316 1 64.92 ? C21 PEE 401 U 1 HETATM 8 C C20 PEE . . . DA 30 157.908 115.721 147.488 1 59.46 ? C20 PEE 401 U 1 HETATM 9 C C19 PEE . . . DA 30 157.91 114.998 148.835 1 54.75 ? C19 PEE 401 U 1 HETATM 10 C C18 PEE . . . DA 30 157.902 115.972 150.012 1 54.77 ? C18 PEE 401 U 1 HETATM 11 C C17 PEE . . . DA 30 156.83 117.049 149.86 1 49.99 ? C17 PEE 401 U 1 HETATM 12 C C16 PEE . . . DA 30 156.169 117.392 151.193 1 54.05 ? C16 PEE 401 U 1 HETATM 13 C C15 PEE . . . DA 30 155.892 118.888 151.335 1 52.86 ? C15 PEE 401 U 1 HETATM 14 C C14 PEE . . . DA 30 154.729 119.156 152.291 1 55.16 ? C14 PEE 401 U 1 HETATM 15 C C13 PEE . . . DA 30 154.793 120.539 152.943 1 52.76 ? C13 PEE 401 U 1 HETATM 16 C C12 PEE . . . DA 30 155.882 120.612 154.018 1 49.85 ? C12 PEE 401 U 1 HETATM 17 C C11 PEE . . . DA 30 155.535 121.607 155.128 1 49.54 ? C11 PEE 401 U 1 HETATM 18 C C10 PEE . . . DA 30 156.441 121.432 156.351 1 59.53 ? C10 PEE 401 U 1 HETATM 19 O O4 PEE . . . DA 30 157.29 120.61 156.333 1 62.73 ? O4 PEE 401 U 1 HETATM 20 O O2 PEE . . . DA 30 156.266 122.246 157.48 1 64.48 ? O2 PEE 401 U 1 HETATM 21 C C2 PEE . . . DA 30 155.968 121.545 158.654 1 61.19 ? C2 PEE 401 U 1 HETATM 22 C C1 PEE . . . DA 30 157.265 121.252 159.404 1 57.09 ? C1 PEE 401 U 1 HETATM 23 O O3P PEE . . . DA 30 157.538 122.311 160.281 1 59.11 ? O3P PEE 401 U 1 HETATM 24 P P PEE . . . DA 30 158.319 121.959 161.693 1 82.14 ? P PEE 401 U 1 HETATM 25 O O2P PEE . . . DA 30 158.345 123.184 162.573 1 64.59 ? O2P PEE 401 U 1 HETATM 26 O O1P PEE . . . DA 30 157.6 120.841 162.403 1 61.55 ? O1P PEE 401 U 1 HETATM 27 O O4P PEE . . . DA 30 159.866 121.487 161.365 1 70.23 ? O4P PEE 401 U 1 HETATM 28 C C4 PEE . . . DA 30 160.774 122.455 160.907 1 61.82 ? C4 PEE 401 U 1 HETATM 29 C C5 PEE . . . DA 30 161.95 122.511 161.884 1 60.56 ? C5 PEE 401 U 1 HETATM 30 N N PEE . . . DA 30 162.747 121.302 161.787 1 58.05 ? N PEE 401 U 1 HETATM 31 C C3 PEE . . . DA 30 155.052 122.391 159.534 1 60.18 ? C3 PEE 401 U 1 HETATM 32 O O3 PEE . . . DA 30 153.774 122.428 158.963 1 59.16 ? O3 PEE 401 U 1 HETATM 33 C C30 PEE . . . DA 30 152.748 122.644 159.89 1 60.21 ? C30 PEE 401 U 1 HETATM 34 O O5 PEE . . . DA 30 152.823 122.176 160.972 1 68.03 ? O5 PEE 401 U 1 HETATM 35 C C31 PEE . . . DA 30 151.528 123.487 159.517 1 59.26 ? C31 PEE 401 U 1 HETATM 36 C C32 PEE . . . DA 30 150.307 123.134 160.367 1 51.96 ? C32 PEE 401 U 1 HETATM 37 C C33 PEE . . . DA 30 149.147 124.107 160.143 1 56.22 ? C33 PEE 401 U 1 HETATM 38 C C34 PEE . . . DA 30 147.809 123.549 160.632 1 58.81 ? C34 PEE 401 U 1 HETATM 39 C C35 PEE . . . DA 30 147.166 122.602 159.614 1 51.36 ? C35 PEE 401 U 1 HETATM 40 C C36 PEE . . . DA 30 147.172 121.152 160.099 1 55.39 ? C36 PEE 401 U 1 HETATM 41 C C37 PEE . . . DA 30 147.21 120.148 158.948 1 54.78 ? C37 PEE 401 U 1 HETATM 42 C C38 PEE . . . DA 30 145.904 119.368 158.821 1 51.72 ? C38 PEE 401 U 1 HETATM 43 C C39 PEE . . . DA 30 145.018 119.913 157.709 1 54.93 ? C39 PEE 401 U 1 HETATM 44 C C40 PEE . . . DA 30 144.953 118.978 156.509 1 55.48 ? C40 PEE 401 U 1 HETATM 45 C C41 PEE . . . DA 30 145.668 119.545 155.29 1 61.41 ? C41 PEE 401 U 1 HETATM 46 C C42 PEE . . . DA 30 144.778 119.535 154.053 1 60.71 ? C42 PEE 401 U 1 HETATM 47 C C43 PEE . . . DA 30 145.584 119.419 152.764 1 54.8 ? C43 PEE 401 U 1 HETATM 48 C C44 PEE . . . DA 30 144.703 119.213 151.54 1 56.94 ? C44 PEE 401 U 1 HETATM 49 C C45 PEE . . . DA 30 144.036 120.505 151.078 1 56.23 ? C45 PEE 401 U 1 HETATM 50 C C46 PEE . . . DA 30 143.009 120.258 149.976 1 58.91 ? C46 PEE 401 U 1 HETATM 51 C C47 PEE . . . DA 30 142.869 121.453 149.037 1 50.79 ? C47 PEE 401 U 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #