data_7VY1 # _model_server_result.job_id eAubf2IL9nHiAEW8r8SXaw _model_server_result.datetime_utc '2024-12-21 16:41:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"MA","auth_seq_id":401}' # _entry.id 7VY1 # _exptl.entry_id 7VY1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 EA N N ? 31 HA N N ? 31 LA N N ? 31 MA N N ? 31 RA N N ? 31 TA N N ? 31 XA N N ? 31 ZA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 95 V CYS 95 1_555 D SG CYS 115 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 L SG CYS 113 d CYS 113 1_555 L SG CYS 125 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 P SG CYS 33 h CYS 33 1_555 P SG CYS 66 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 P SG CYS 43 h CYS 43 1_555 P SG CYS 56 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 AA SG CYS 88 u CYS 88 1_555 AA SG CYS 100 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 BA SG CYS 68 v CYS 69 1_555 BA SG CYS 79 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VY1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE U 1 401 401 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 30 PEE W 1 201 202 PEE PEE . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 31 CDL a 1 201 201 CDL CDL . IA 33 PLX a 1 202 101 PLX PLX . JA 30 PEE b 1 201 720 PEE PEE . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 31 CDL i 1 401 401 CDL CDL . NA 30 PEE i 1 402 718 PEE PEE . OA 30 PEE j 1 201 101 PEE PEE . PA 33 PLX j 1 202 203 PLX PLX . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 713 CDL CDL . SA 30 PEE l 1 703 719 PEE PEE . TA 31 CDL o 1 201 203 CDL CDL . UA 30 PEE r 1 501 202 PEE PEE . VA 33 PLX r 1 502 205 PLX PLX . WA 33 PLX r 1 503 201 PLX PLX . XA 31 CDL r 1 504 712 CDL CDL . YA 34 UQ s 1 401 403 UQ UQ . ZA 31 CDL u 1 201 102 CDL CDL . AB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . MA 31 190.398 149.504 151.546 1 92.71 ? C1 CDL 401 i 1 HETATM 2 O O1 CDL . . . MA 31 189.267 150.16 152.035 1 93.2 ? O1 CDL 401 i 1 HETATM 3 C CA2 CDL . . . MA 31 191.619 150.427 151.78 1 94.04 ? CA2 CDL 401 i 1 HETATM 4 O OA2 CDL . . . MA 31 192.51 150.262 150.687 1 96.02 ? OA2 CDL 401 i 1 HETATM 5 P PA1 CDL . . . MA 31 193.865 151.214 150.634 1 111.3 ? PA1 CDL 401 i 1 HETATM 6 O OA3 CDL . . . MA 31 193.531 152.575 151.191 1 93.04 ? OA3 CDL 401 i 1 HETATM 7 O OA4 CDL . . . MA 31 194.954 150.593 151.458 1 94.93 ? OA4 CDL 401 i 1 HETATM 8 O OA5 CDL . . . MA 31 194.371 151.363 149.059 1 100.27 ? OA5 CDL 401 i 1 HETATM 9 C CA3 CDL . . . MA 31 194.034 152.546 148.351 1 93.88 ? CA3 CDL 401 i 1 HETATM 10 C CA4 CDL . . . MA 31 193.382 152.148 147.036 1 91.02 ? CA4 CDL 401 i 1 HETATM 11 O OA6 CDL . . . MA 31 193.969 152.867 145.986 1 91.64 ? OA6 CDL 401 i 1 HETATM 12 C CA5 CDL . . . MA 31 193.989 152.171 144.748 1 89.5 ? CA5 CDL 401 i 1 HETATM 13 O OA7 CDL . . . MA 31 193.54 151.071 144.674 1 91.19 ? OA7 CDL 401 i 1 HETATM 14 C C11 CDL . . . MA 31 194.597 152.839 143.478 1 86.13 ? C11 CDL 401 i 1 HETATM 15 C C12 CDL . . . MA 31 194.284 152.039 142.211 1 86.99 ? C12 CDL 401 i 1 HETATM 16 C C13 CDL . . . MA 31 195.194 152.417 141.047 1 89.78 ? C13 CDL 401 i 1 HETATM 17 C C14 CDL . . . MA 31 194.404 152.998 139.86 1 90.12 ? C14 CDL 401 i 1 HETATM 18 C C15 CDL . . . MA 31 193.584 151.914 139.106 1 88.85 ? C15 CDL 401 i 1 HETATM 19 C C16 CDL . . . MA 31 194.442 151.105 138.104 1 87.91 ? C16 CDL 401 i 1 HETATM 20 C C17 CDL . . . MA 31 195.536 151.979 137.421 1 89.62 ? C17 CDL 401 i 1 HETATM 21 C C18 CDL . . . MA 31 194.999 152.723 136.174 1 86.97 ? C18 CDL 401 i 1 HETATM 22 C CA6 CDL . . . MA 31 191.874 152.458 147.099 1 92.62 ? CA6 CDL 401 i 1 HETATM 23 O OA8 CDL . . . MA 31 191.195 151.264 147.437 1 93.15 ? OA8 CDL 401 i 1 HETATM 24 C CA7 CDL . . . MA 31 190.667 150.558 146.312 1 95.33 ? CA7 CDL 401 i 1 HETATM 25 O OA9 CDL . . . MA 31 191.061 149.474 146.056 1 97.16 ? OA9 CDL 401 i 1 HETATM 26 C C31 CDL . . . MA 31 189.578 151.204 145.438 1 87.87 ? C31 CDL 401 i 1 HETATM 27 C C32 CDL . . . MA 31 189.16 150.298 144.284 1 87.2 ? C32 CDL 401 i 1 HETATM 28 C C33 CDL . . . MA 31 189.667 150.824 142.935 1 87.99 ? C33 CDL 401 i 1 HETATM 29 C C34 CDL . . . MA 31 189.028 152.185 142.578 1 88.04 ? C34 CDL 401 i 1 HETATM 30 C C35 CDL . . . MA 31 190.068 153.225 142.088 1 86.99 ? C35 CDL 401 i 1 HETATM 31 C C36 CDL . . . MA 31 190.158 153.252 140.547 1 86.56 ? C36 CDL 401 i 1 HETATM 32 C C37 CDL . . . MA 31 190.277 154.682 139.999 1 86.2 ? C37 CDL 401 i 1 HETATM 33 C C38 CDL . . . MA 31 189.597 154.826 138.634 1 84.47 ? C38 CDL 401 i 1 HETATM 34 C C39 CDL . . . MA 31 190.3 153.988 137.551 1 83.88 ? C39 CDL 401 i 1 HETATM 35 C C40 CDL . . . MA 31 190.639 154.818 136.296 1 86.56 ? C40 CDL 401 i 1 HETATM 36 C C41 CDL . . . MA 31 190.797 153.92 135.022 1 89.85 ? C41 CDL 401 i 1 HETATM 37 C C42 CDL . . . MA 31 191.434 154.691 133.835 1 89.7 ? C42 CDL 401 i 1 HETATM 38 C CB2 CDL . . . MA 31 190.515 148.132 152.292 1 90.93 ? CB2 CDL 401 i 1 HETATM 39 O OB2 CDL . . . MA 31 189.621 147.227 151.66 1 94.89 ? OB2 CDL 401 i 1 HETATM 40 P PB2 CDL . . . MA 31 189.31 145.749 152.389 1 112.72 ? PB2 CDL 401 i 1 HETATM 41 O OB3 CDL . . . MA 31 187.829 145.436 152.283 1 97.12 ? OB3 CDL 401 i 1 HETATM 42 O OB4 CDL . . . MA 31 189.703 145.817 153.846 1 94.53 ? OB4 CDL 401 i 1 HETATM 43 O OB5 CDL . . . MA 31 190.197 144.554 151.619 1 96.24 ? OB5 CDL 401 i 1 HETATM 44 C CB3 CDL . . . MA 31 189.567 143.776 150.609 1 89.45 ? CB3 CDL 401 i 1 HETATM 45 C CB4 CDL . . . MA 31 190.518 143.697 149.406 1 91.69 ? CB4 CDL 401 i 1 HETATM 46 O OB6 CDL . . . MA 31 189.812 144.021 148.232 1 98.02 ? OB6 CDL 401 i 1 HETATM 47 C CB5 CDL . . . MA 31 189.795 145.412 147.926 1 92.11 ? CB5 CDL 401 i 1 HETATM 48 O OB7 CDL . . . MA 31 190.346 146.185 148.635 1 91.02 ? OB7 CDL 401 i 1 HETATM 49 C C51 CDL . . . MA 31 189.054 145.916 146.671 1 87.53 ? C51 CDL 401 i 1 HETATM 50 C C52 CDL . . . MA 31 189.602 145.28 145.383 1 88.69 ? C52 CDL 401 i 1 HETATM 51 C C53 CDL . . . MA 31 188.564 145.267 144.251 1 86.79 ? C53 CDL 401 i 1 HETATM 52 C C54 CDL . . . MA 31 189.087 144.544 142.993 1 87.2 ? C54 CDL 401 i 1 HETATM 53 C C55 CDL . . . MA 31 189.34 145.513 141.827 1 88.6 ? C55 CDL 401 i 1 HETATM 54 C C56 CDL . . . MA 31 189.884 144.789 140.567 1 90.64 ? C56 CDL 401 i 1 HETATM 55 C CB6 CDL . . . MA 31 191.084 142.285 149.292 1 89.85 ? CB6 CDL 401 i 1 HETATM 56 O OB8 CDL . . . MA 31 190.377 141.602 148.261 1 93.05 ? OB8 CDL 401 i 1 HETATM 57 C CB7 CDL . . . MA 31 190.146 140.232 148.529 1 89.34 ? CB7 CDL 401 i 1 HETATM 58 O OB9 CDL . . . MA 31 189.96 139.871 149.642 1 90.94 ? OB9 CDL 401 i 1 HETATM 59 C C71 CDL . . . MA 31 190.124 139.204 147.375 1 89.16 ? C71 CDL 401 i 1 HETATM 60 C C72 CDL . . . MA 31 188.987 138.182 147.527 1 89.75 ? C72 CDL 401 i 1 HETATM 61 C C73 CDL . . . MA 31 188.202 137.973 146.22 1 91.52 ? C73 CDL 401 i 1 HETATM 62 C C74 CDL . . . MA 31 186.738 137.577 146.474 1 90.51 ? C74 CDL 401 i 1 HETATM 63 C C75 CDL . . . MA 31 186.023 137.073 145.191 1 90.23 ? C75 CDL 401 i 1 HETATM 64 C C76 CDL . . . MA 31 184.561 137.582 145.095 1 90.62 ? C76 CDL 401 i 1 HETATM 65 C C77 CDL . . . MA 31 184.099 137.799 143.623 1 89.7 ? C77 CDL 401 i 1 HETATM 66 C C78 CDL . . . MA 31 182.657 137.329 143.392 1 87.11 ? C78 CDL 401 i 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 66 #