data_7VY1 # _model_server_result.job_id ZcQOmSDQ8_dbSnBTj1w4qA _model_server_result.datetime_utc '2024-11-14 22:43:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":401}' # _entry.id 7VY1 # _exptl.entry_id 7VY1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 863.343 _entity.id 34 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Coenzyme Q10,(2Z,6E,10Z,14E,18E,22E,26Z)-isomer' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 34 _struct_asym.id YA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 95 V CYS 95 1_555 D SG CYS 115 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 L SG CYS 113 d CYS 113 1_555 L SG CYS 125 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 P SG CYS 33 h CYS 33 1_555 P SG CYS 66 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 P SG CYS 43 h CYS 43 1_555 P SG CYS 56 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 AA SG CYS 88 u CYS 88 1_555 AA SG CYS 100 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 BA SG CYS 68 v CYS 69 1_555 BA SG CYS 79 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id UQ _chem_comp.mon_nstd_flag . _chem_comp.name 'Coenzyme Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-isomer' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VY1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE U 1 401 401 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 30 PEE W 1 201 202 PEE PEE . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 31 CDL a 1 201 201 CDL CDL . IA 33 PLX a 1 202 101 PLX PLX . JA 30 PEE b 1 201 720 PEE PEE . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 31 CDL i 1 401 401 CDL CDL . NA 30 PEE i 1 402 718 PEE PEE . OA 30 PEE j 1 201 101 PEE PEE . PA 33 PLX j 1 202 203 PLX PLX . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 713 CDL CDL . SA 30 PEE l 1 703 719 PEE PEE . TA 31 CDL o 1 201 203 CDL CDL . UA 30 PEE r 1 501 202 PEE PEE . VA 33 PLX r 1 502 205 PLX PLX . WA 33 PLX r 1 503 201 PLX PLX . XA 31 CDL r 1 504 712 CDL CDL . YA 34 UQ s 1 401 403 UQ UQ . ZA 31 CDL u 1 201 102 CDL CDL . AB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ . . . YA 34 128.668 136.932 164.576 1 80.74 ? C1 UQ 401 s 1 HETATM 2 C C2 UQ . . . YA 34 129.371 136.376 165.762 1 84.65 ? C2 UQ 401 s 1 HETATM 3 C C3 UQ . . . YA 34 130.31 137.085 166.396 1 86.98 ? C3 UQ 401 s 1 HETATM 4 C C4 UQ . . . YA 34 130.669 138.443 165.922 1 90.19 ? C4 UQ 401 s 1 HETATM 5 C C5 UQ . . . YA 34 129.97 139.004 164.737 1 82.21 ? C5 UQ 401 s 1 HETATM 6 C C6 UQ . . . YA 34 129.023 138.3 164.101 1 75.84 ? C6 UQ 401 s 1 HETATM 7 C CM5 UQ . . . YA 34 130.354 140.375 164.287 1 78.68 ? CM5 UQ 401 s 1 HETATM 8 C CM3 UQ . . . YA 34 130.391 136.933 168.734 1 84.59 ? CM3 UQ 401 s 1 HETATM 9 C CM2 UQ . . . YA 34 129.928 134.106 165.783 1 82.26 ? CM2 UQ 401 s 1 HETATM 10 C C7 UQ . . . YA 34 128.35 138.907 162.898 1 74.89 ? C7 UQ 401 s 1 HETATM 11 C C8 UQ . . . YA 34 126.897 138.594 162.694 1 80.18 ? C8 UQ 401 s 1 HETATM 12 C C9 UQ . . . YA 34 126.164 139.032 161.671 1 83.86 ? C9 UQ 401 s 1 HETATM 13 C C10 UQ . . . YA 34 124.721 138.659 161.548 1 80.15 ? C10 UQ 401 s 1 HETATM 14 C C11 UQ . . . YA 34 126.705 139.922 160.584 1 79.66 ? C11 UQ 401 s 1 HETATM 15 C C12 UQ . . . YA 34 126.055 139.605 159.229 1 79.15 ? C12 UQ 401 s 1 HETATM 16 C C13 UQ . . . YA 34 125.265 140.736 158.652 1 80.24 ? C13 UQ 401 s 1 HETATM 17 C C14 UQ . . . YA 34 124.744 140.766 157.424 1 83.12 ? C14 UQ 401 s 1 HETATM 18 C C15 UQ . . . YA 34 124.94 139.608 156.493 1 81.03 ? C15 UQ 401 s 1 HETATM 19 C C16 UQ . . . YA 34 123.958 141.928 156.871 1 79.39 ? C16 UQ 401 s 1 HETATM 20 C C17 UQ . . . YA 34 122.467 141.611 156.678 1 80.5 ? C17 UQ 401 s 1 HETATM 21 C C18 UQ . . . YA 34 122.146 141.073 155.318 1 83.22 ? C18 UQ 401 s 1 HETATM 22 C C19 UQ . . . YA 34 121.791 141.752 154.224 1 86.61 ? C19 UQ 401 s 1 HETATM 23 C C20 UQ . . . YA 34 121.672 143.248 154.249 1 83.59 ? C20 UQ 401 s 1 HETATM 24 C C21 UQ . . . YA 34 121.486 141.108 152.898 1 82.68 ? C21 UQ 401 s 1 HETATM 25 O O2 UQ . . . YA 34 129.022 135.144 166.161 1 86.55 ? O2 UQ 401 s 1 HETATM 26 O O3 UQ . . . YA 34 130.965 136.613 167.468 1 83.69 ? O3 UQ 401 s 1 HETATM 27 O O4 UQ . . . YA 34 131.523 139.067 166.511 1 88.58 ? O4 UQ 401 s 1 HETATM 28 O O1 UQ . . . YA 34 127.827 136.241 164.043 1 82.4 ? O1 UQ 401 s 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #