data_7VY1
#
_model_server_result.job_id            VNgncxN6k-MyxQCrrFoMWg 
_model_server_result.datetime_utc      '2024-12-21 16:49:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"UA","auth_seq_id":501}' 
#
_entry.id    7VY1 
#
_exptl.entry_id    7VY1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          30 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 30 DA N N 
? 30 FA N N 
? 30 JA N N 
? 30 NA N N 
? 30 OA N N 
? 30 QA N N 
? 30 SA N N 
? 30 UA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 95 V CYS 95 1_555 D SG CYS 115 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 L SG CYS 113 d CYS 113 1_555 L SG CYS 125 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 P SG CYS 33 h CYS 33 1_555 P SG CYS 66 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 P SG CYS 43 h CYS 43 1_555 P SG CYS 56 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 AA SG CYS 88 u CYS 88 1_555 AA SG CYS 100 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 BA SG CYS 68 v CYS 69 1_555 BA SG CYS 79 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
_atom_sites.entry_id                     7VY1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 401 401 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 30 PEE W 1 201 202 PEE PEE . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 31 CDL a 1 201 201 CDL CDL . 
IA 33 PLX a 1 202 101 PLX PLX . 
JA 30 PEE b 1 201 720 PEE PEE . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 30 PEE i 1 402 718 PEE PEE . 
OA 30 PEE j 1 201 101 PEE PEE . 
PA 33 PLX j 1 202 203 PLX PLX . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 713 CDL CDL . 
SA 30 PEE l 1 703 719 PEE PEE . 
TA 31 CDL o 1 201 203 CDL CDL . 
UA 30 PEE r 1 501 202 PEE PEE . 
VA 33 PLX r 1 502 205 PLX PLX . 
WA 33 PLX r 1 503 201 PLX PLX . 
XA 31 CDL r 1 504 712 CDL CDL . 
YA 34 UQ s 1 401 403 UQ UQ . 
ZA 31 CDL u 1 201 102 CDL CDL . 
AB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 PEE . . . UA 30 199.801 192.283 135.275 1 65.71 ? C27 PEE 501 r 1 
HETATM 2 C C26 PEE . . . UA 30 198.371 192.139 134.756 1 64.81 ? C26 PEE 501 r 1 
HETATM 3 C C25 PEE . . . UA 30 198.284 192.3 133.244 1 61.7 ? C25 PEE 501 r 1 
HETATM 4 C C24 PEE . . . UA 30 197.007 191.686 132.676 1 68.22 ? C24 PEE 501 r 1 
HETATM 5 C C23 PEE . . . UA 30 197.072 191.496 131.162 1 71 ? C23 PEE 501 r 1 
HETATM 6 C C22 PEE . . . UA 30 195.704 191.153 130.578 1 67.63 ? C22 PEE 501 r 1 
HETATM 7 C C21 PEE . . . UA 30 195.378 191.97 129.324 1 65.22 ? C21 PEE 501 r 1 
HETATM 8 C C20 PEE . . . UA 30 196.026 191.394 128.066 1 63.73 ? C20 PEE 501 r 1 
HETATM 9 C C19 PEE . . . UA 30 195.398 191.949 126.787 1 62.26 ? C19 PEE 501 r 1 
HETATM 10 C C18 PEE . . . UA 30 194.079 191.262 126.438 1 57.02 ? C18 PEE 501 r 1 
HETATM 11 C C17 PEE . . . UA 30 194.158 189.752 126.646 1 57.66 ? C17 PEE 501 r 1 
HETATM 12 C C16 PEE . . . UA 30 193.115 188.99 125.831 1 61.51 ? C16 PEE 501 r 1 
HETATM 13 C C15 PEE . . . UA 30 193.355 189.113 124.328 1 59.1 ? C15 PEE 501 r 1 
HETATM 14 C C14 PEE . . . UA 30 192.909 187.859 123.575 1 52.06 ? C14 PEE 501 r 1 
HETATM 15 C C13 PEE . . . UA 30 194.098 187.049 123.055 1 50.2 ? C13 PEE 501 r 1 
HETATM 16 C C12 PEE . . . UA 30 194.45 187.425 121.612 1 60.84 ? C12 PEE 501 r 1 
HETATM 17 C C11 PEE . . . UA 30 193.693 186.563 120.598 1 62.57 ? C11 PEE 501 r 1 
HETATM 18 C C10 PEE . . . UA 30 193.322 187.331 119.325 1 66.3 ? C10 PEE 501 r 1 
HETATM 19 O O4 PEE . . . UA 30 194.009 188.21 118.943 1 66.75 ? O4 PEE 501 r 1 
HETATM 20 O O2 PEE . . . UA 30 192.167 186.984 118.611 1 67.59 ? O2 PEE 501 r 1 
HETATM 21 C C2 PEE . . . UA 30 191.296 188.051 118.362 1 60.29 ? C2 PEE 501 r 1 
HETATM 22 C C1 PEE . . . UA 30 190.768 187.928 116.935 1 62.16 ? C1 PEE 501 r 1 
HETATM 23 O O3P PEE . . . UA 30 189.416 187.555 116.976 1 62.38 ? O3P PEE 501 r 1 
HETATM 24 P P PEE . . . UA 30 188.81 186.71 115.693 1 86 ? P PEE 501 r 1 
HETATM 25 O O2P PEE . . . UA 30 187.851 185.656 116.186 1 70.45 ? O2P PEE 501 r 1 
HETATM 26 O O1P PEE . . . UA 30 189.943 186.049 114.95 1 71.11 ? O1P PEE 501 r 1 
HETATM 27 O O4P PEE . . . UA 30 188.016 187.735 114.672 1 69.85 ? O4P PEE 501 r 1 
HETATM 28 C C4 PEE . . . UA 30 188.364 187.714 113.312 1 62.04 ? C4 PEE 501 r 1 
HETATM 29 C C5 PEE . . . UA 30 187.096 187.938 112.487 1 64.15 ? C5 PEE 501 r 1 
HETATM 30 N N PEE . . . UA 30 186.697 189.332 112.544 1 66.14 ? N PEE 501 r 1 
HETATM 31 C C3 PEE . . . UA 30 190.127 187.998 119.341 1 57.89 ? C3 PEE 501 r 1 
HETATM 32 O O3 PEE . . . UA 30 190.149 189.148 120.138 1 64 ? O3 PEE 501 r 1 
HETATM 33 C C30 PEE . . . UA 30 189.451 188.996 121.341 1 64.81 ? C30 PEE 501 r 1 
HETATM 34 O O5 PEE . . . UA 30 188.648 188.135 121.446 1 72.81 ? O5 PEE 501 r 1 
HETATM 35 C C31 PEE . . . UA 30 189.712 189.929 122.523 1 59.42 ? C31 PEE 501 r 1 
HETATM 36 C C32 PEE . . . UA 30 188.621 189.801 123.588 1 57.39 ? C32 PEE 501 r 1 
HETATM 37 C C33 PEE . . . UA 30 189.094 190.247 124.974 1 59.75 ? C33 PEE 501 r 1 
HETATM 38 C C34 PEE . . . UA 30 188.315 189.556 126.094 1 61.93 ? C34 PEE 501 r 1 
HETATM 39 C C35 PEE . . . UA 30 189.059 189.587 127.433 1 64.56 ? C35 PEE 501 r 1 
HETATM 40 C C36 PEE . . . UA 30 189.258 191.014 127.951 1 68.88 ? C36 PEE 501 r 1 
HETATM 41 C C37 PEE . . . UA 30 190.404 191.118 128.96 1 67.69 ? C37 PEE 501 r 1 
HETATM 42 C C38 PEE . . . UA 30 190.643 192.556 129.421 1 63.71 ? C38 PEE 501 r 1 
HETATM 43 C C39 PEE . . . UA 30 190.544 193.558 128.275 1 63.46 ? C39 PEE 501 r 1 
HETATM 44 C C40 PEE . . . UA 30 191.181 194.898 128.623 1 71.11 ? C40 PEE 501 r 1 
HETATM 45 C C41 PEE . . . UA 30 192.647 194.753 129.009 1 73.16 ? C41 PEE 501 r 1 
HETATM 46 C C42 PEE . . . UA 30 193.564 195.61 128.145 1 70.35 ? C42 PEE 501 r 1 
HETATM 47 C C43 PEE . . . UA 30 194.56 196.409 128.979 1 68.62 ? C43 PEE 501 r 1 
HETATM 48 C C44 PEE . . . UA 30 195.2 195.567 130.075 1 63.89 ? C44 PEE 501 r 1 
HETATM 49 C C45 PEE . . . UA 30 196.292 196.328 130.821 1 66.85 ? C45 PEE 501 r 1 
HETATM 50 C C46 PEE . . . UA 30 196.903 195.504 131.952 1 68.16 ? C46 PEE 501 r 1 
HETATM 51 C C47 PEE . . . UA 30 196.03 195.505 133.205 1 68.37 ? C47 PEE 501 r 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    54 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           51 
#