data_7VY1
#
_model_server_result.job_id            syQiiKJXnYJsJgXKdb8tdg 
_model_server_result.datetime_utc      '2024-11-14 23:10:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"VA","auth_seq_id":502}' 
#
_entry.id    7VY1 
#
_exptl.entry_id    7VY1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.132 
_entity.id                          33 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 33 IA N N 
? 33 KA N N 
? 33 PA N N 
? 33 VA N N 
? 33 WA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 95 V CYS 95 1_555 D SG CYS 115 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 L SG CYS 113 d CYS 113 1_555 L SG CYS 125 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 P SG CYS 33 h CYS 33 1_555 P SG CYS 66 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 P SG CYS 43 h CYS 43 1_555 P SG CYS 56 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 AA SG CYS 88 u CYS 88 1_555 AA SG CYS 100 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 BA SG CYS 68 v CYS 69 1_555 BA SG CYS 79 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C42 H89 N O8 P 1' 
_chem_comp.formula_weight    767.132 
_chem_comp.id                PLX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VY1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 401 401 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 30 PEE W 1 201 202 PEE PEE . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 31 CDL a 1 201 201 CDL CDL . 
IA 33 PLX a 1 202 101 PLX PLX . 
JA 30 PEE b 1 201 720 PEE PEE . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 30 PEE i 1 402 718 PEE PEE . 
OA 30 PEE j 1 201 101 PEE PEE . 
PA 33 PLX j 1 202 203 PLX PLX . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 713 CDL CDL . 
SA 30 PEE l 1 703 719 PEE PEE . 
TA 31 CDL o 1 201 203 CDL CDL . 
UA 30 PEE r 1 501 202 PEE PEE . 
VA 33 PLX r 1 502 205 PLX PLX . 
WA 33 PLX r 1 503 201 PLX PLX . 
XA 31 CDL r 1 504 712 CDL CDL . 
YA 34 UQ s 1 401 403 UQ UQ . 
ZA 31 CDL u 1 201 102 CDL CDL . 
AB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 PLX . . . VA 33 198.03 200.547 134.866 1 89.23 ? C23 PLX 502 r 1 
HETATM 2 C C22 PLX . . . VA 33 199.505 200.106 134.629 1 87.3 ? C22 PLX 502 r 1 
HETATM 3 C C21 PLX . . . VA 33 199.823 199.886 133.115 1 88.18 ? C21 PLX 502 r 1 
HETATM 4 C C20 PLX . . . VA 33 198.974 198.731 132.491 1 87.64 ? C20 PLX 502 r 1 
HETATM 5 C C19 PLX . . . VA 33 199.07 198.7 130.929 1 88.71 ? C19 PLX 502 r 1 
HETATM 6 C C18 PLX . . . VA 33 198.674 200.072 130.27 1 87.8 ? C18 PLX 502 r 1 
HETATM 7 C C17 PLX . . . VA 33 198.519 199.95 128.704 1 87.41 ? C17 PLX 502 r 1 
HETATM 8 C C16 PLX . . . VA 33 197.046 199.633 128.276 1 88.79 ? C16 PLX 502 r 1 
HETATM 9 C C15 PLX . . . VA 33 196.415 200.791 127.416 1 90.52 ? C15 PLX 502 r 1 
HETATM 10 C C14 PLX . . . VA 33 195.843 200.277 126.053 1 87.12 ? C14 PLX 502 r 1 
HETATM 11 C C13 PLX . . . VA 33 196.552 200.961 124.826 1 84.03 ? C13 PLX 502 r 1 
HETATM 12 C C12 PLX . . . VA 33 195.543 201.691 123.878 1 86.28 ? C12 PLX 502 r 1 
HETATM 13 C C11 PLX . . . VA 33 194.161 200.96 123.786 1 89.6 ? C11 PLX 502 r 1 
HETATM 14 C C10 PLX . . . VA 33 193.359 201.366 122.506 1 91.87 ? C10 PLX 502 r 1 
HETATM 15 C C9 PLX . . . VA 33 194.241 202.156 121.47 1 92.53 ? C9 PLX 502 r 1 
HETATM 16 C C8 PLX . . . VA 33 193.471 202.464 120.131 1 88.84 ? C8 PLX 502 r 1 
HETATM 17 C C7 PLX . . . VA 33 193.248 204.011 119.917 1 90.61 ? C7 PLX 502 r 1 
HETATM 18 C C6 PLX . . . VA 33 191.937 204.515 120.583 1 94.65 ? C6 PLX 502 r 1 
HETATM 19 O O7 PLX . . . VA 33 192.027 204.394 121.953 1 90.4 ? O7 PLX 502 r 1 
HETATM 20 O O6 PLX . . . VA 33 191.722 205.878 120.246 1 96.99 ? O6 PLX 502 r 1 
HETATM 21 C C4 PLX . . . VA 33 190.453 206.21 119.722 1 91.89 ? C4 PLX 502 r 1 
HETATM 22 C C3 PLX . . . VA 33 190.571 206.472 118.214 1 91.6 ? C3 PLX 502 r 1 
HETATM 23 O O4 PLX . . . VA 33 189.259 206.343 117.659 1 94.84 ? O4 PLX 502 r 1 
HETATM 24 P P1 PLX . . . VA 33 189.082 205.559 116.191 1 112.63 ? P1 PLX 502 r 1 
HETATM 25 O O1 PLX . . . VA 33 189.472 203.946 116.374 1 94.13 ? O1 PLX 502 r 1 
HETATM 26 C C2 PLX . . . VA 33 190.827 203.546 116.167 1 89.79 ? C2 PLX 502 r 1 
HETATM 27 C C1 PLX . . . VA 33 190.873 201.982 116.087 1 86.73 ? C1 PLX 502 r 1 
HETATM 28 N N1 PLX . . . VA 33 190.422 201.486 114.744 1 86.95 ? N1 PLX 502 r 1 
HETATM 29 C C1C PLX . . . VA 33 191.158 202.25 113.719 1 88.28 ? C1C PLX 502 r 1 
HETATM 30 C C1B PLX . . . VA 33 190.8 200.046 114.691 1 87.09 ? C1B PLX 502 r 1 
HETATM 31 C C1A PLX . . . VA 33 188.987 201.552 114.373 1 88.51 ? C1A PLX 502 r 1 
HETATM 32 O O2 PLX . . . VA 33 189.996 206.183 115.159 1 98.7 ? O2 PLX 502 r 1 
HETATM 33 C C5 PLX . . . VA 33 189.42 205.086 119.941 1 89.79 ? C5 PLX 502 r 1 
HETATM 34 O O8 PLX . . . VA 33 188.229 205.661 120.477 1 91.91 ? O8 PLX 502 r 1 
HETATM 35 C C24 PLX . . . VA 33 187.946 205.23 121.789 1 94.08 ? C24 PLX 502 r 1 
HETATM 36 O O9 PLX . . . VA 33 189.129 205.156 122.513 1 94.64 ? O9 PLX 502 r 1 
HETATM 37 C C25 PLX . . . VA 33 187.287 203.836 121.737 1 90.82 ? C25 PLX 502 r 1 
HETATM 38 C C26 PLX . . . VA 33 187.732 202.929 122.928 1 88.29 ? C26 PLX 502 r 1 
HETATM 39 C C27 PLX . . . VA 33 187.133 203.397 124.29 1 88.04 ? C27 PLX 502 r 1 
HETATM 40 C C28 PLX . . . VA 33 187.022 202.217 125.31 1 89.55 ? C28 PLX 502 r 1 
HETATM 41 C C29 PLX . . . VA 33 188.429 201.754 125.808 1 91.65 ? C29 PLX 502 r 1 
HETATM 42 C C30 PLX . . . VA 33 188.654 202.065 127.335 1 92.02 ? C30 PLX 502 r 1 
HETATM 43 C C31 PLX . . . VA 33 189.245 203.507 127.571 1 89.45 ? C31 PLX 502 r 1 
HETATM 44 C C32 PLX . . . VA 33 189.571 203.787 129.091 1 90.2 ? C32 PLX 502 r 1 
HETATM 45 C C33 PLX . . . VA 33 189.88 202.458 129.892 1 91.02 ? C33 PLX 502 r 1 
HETATM 46 C C34 PLX . . . VA 33 191.301 202.491 130.585 1 92.37 ? C34 PLX 502 r 1 
HETATM 47 C C35 PLX . . . VA 33 191.623 201.152 131.372 1 92.52 ? C35 PLX 502 r 1 
HETATM 48 C C36 PLX . . . VA 33 193.077 200.631 131.095 1 90.36 ? C36 PLX 502 r 1 
HETATM 49 C C37 PLX . . . VA 33 193.511 199.527 132.126 1 89.65 ? C37 PLX 502 r 1 
HETATM 50 C C38 PLX . . . VA 33 192.484 198.352 132.197 1 92.54 ? C38 PLX 502 r 1 
HETATM 51 C C39 PLX . . . VA 33 192.704 197.449 133.437 1 90.28 ? C39 PLX 502 r 1 
HETATM 52 O O3 PLX . . . VA 33 187.643 205.676 115.729 1 98.08 ? O3 PLX 502 r 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    119 
_model_server_stats.query_time_ms           498 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           52 
#