data_7VY1
#
_model_server_result.job_id            dI6X8GqmGNhviZisZBHLrA 
_model_server_result.datetime_utc      '2024-12-21 16:40:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"XA","auth_seq_id":504}' 
#
_entry.id    7VY1 
#
_exptl.entry_id    7VY1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 31 EA N N 
? 31 HA N N 
? 31 LA N N 
? 31 MA N N 
? 31 RA N N 
? 31 TA N N 
? 31 XA N N 
? 31 ZA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 95 V CYS 95 1_555 D SG CYS 115 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 L SG CYS 113 d CYS 113 1_555 L SG CYS 125 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 P SG CYS 33 h CYS 33 1_555 P SG CYS 66 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 P SG CYS 43 h CYS 43 1_555 P SG CYS 56 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 AA SG CYS 88 u CYS 88 1_555 AA SG CYS 100 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 BA SG CYS 68 v CYS 69 1_555 BA SG CYS 79 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VY1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 401 401 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 30 PEE W 1 201 202 PEE PEE . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 31 CDL a 1 201 201 CDL CDL . 
IA 33 PLX a 1 202 101 PLX PLX . 
JA 30 PEE b 1 201 720 PEE PEE . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 30 PEE i 1 402 718 PEE PEE . 
OA 30 PEE j 1 201 101 PEE PEE . 
PA 33 PLX j 1 202 203 PLX PLX . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 713 CDL CDL . 
SA 30 PEE l 1 703 719 PEE PEE . 
TA 31 CDL o 1 201 203 CDL CDL . 
UA 30 PEE r 1 501 202 PEE PEE . 
VA 33 PLX r 1 502 205 PLX PLX . 
WA 33 PLX r 1 503 201 PLX PLX . 
XA 31 CDL r 1 504 712 CDL CDL . 
YA 34 UQ s 1 401 403 UQ UQ . 
ZA 31 CDL u 1 201 102 CDL CDL . 
AB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . XA 31 242.405 200.009 148.722 1 69.53 ? C1 CDL 504 r 1 
HETATM 2 O O1 CDL . . . XA 31 242.107 199.239 147.598 1 73.39 ? O1 CDL 504 r 1 
HETATM 3 C CA2 CDL . . . XA 31 242.29 201.497 148.308 1 67.94 ? CA2 CDL 504 r 1 
HETATM 4 O OA2 CDL . . . XA 31 242.226 201.537 146.891 1 72.5 ? OA2 CDL 504 r 1 
HETATM 5 P PA1 CDL . . . XA 31 242.639 202.939 146.113 1 87.05 ? PA1 CDL 504 r 1 
HETATM 6 O OA3 CDL . . . XA 31 244.093 202.896 145.719 1 72.71 ? OA3 CDL 504 r 1 
HETATM 7 O OA4 CDL . . . XA 31 242.393 204.106 147.018 1 72.4 ? OA4 CDL 504 r 1 
HETATM 8 O OA5 CDL . . . XA 31 241.696 203.08 144.759 1 68.35 ? OA5 CDL 504 r 1 
HETATM 9 C CA3 CDL . . . XA 31 241.613 201.95 143.912 1 61.88 ? CA3 CDL 504 r 1 
HETATM 10 C CA4 CDL . . . XA 31 241.614 202.439 142.475 1 70.76 ? CA4 CDL 504 r 1 
HETATM 11 O OA6 CDL . . . XA 31 240.524 203.295 142.276 1 75.4 ? OA6 CDL 504 r 1 
HETATM 12 C CA5 CDL . . . XA 31 240.875 204.542 141.694 1 68.78 ? CA5 CDL 504 r 1 
HETATM 13 O OA7 CDL . . . XA 31 242.008 204.904 141.705 1 64.15 ? OA7 CDL 504 r 1 
HETATM 14 C C11 CDL . . . XA 31 239.781 205.435 141.035 1 63.29 ? C11 CDL 504 r 1 
HETATM 15 C C12 CDL . . . XA 31 239.452 204.979 139.611 1 66.01 ? C12 CDL 504 r 1 
HETATM 16 C C13 CDL . . . XA 31 238.629 206.011 138.848 1 70.85 ? C13 CDL 504 r 1 
HETATM 17 C C14 CDL . . . XA 31 239.27 206.363 137.493 1 68.9 ? C14 CDL 504 r 1 
HETATM 18 C C15 CDL . . . XA 31 238.286 207.129 136.567 1 61.64 ? C15 CDL 504 r 1 
HETATM 19 C C16 CDL . . . XA 31 238.797 207.198 135.109 1 65.52 ? C16 CDL 504 r 1 
HETATM 20 C C17 CDL . . . XA 31 238.211 206.045 134.242 1 68.1 ? C17 CDL 504 r 1 
HETATM 21 C C18 CDL . . . XA 31 238.397 206.302 132.727 1 70.95 ? C18 CDL 504 r 1 
HETATM 22 C C19 CDL . . . XA 31 239.885 206.56 132.367 1 71.9 ? C19 CDL 504 r 1 
HETATM 23 C C20 CDL . . . XA 31 240.201 206.2 130.897 1 73.58 ? C20 CDL 504 r 1 
HETATM 24 C C21 CDL . . . XA 31 240.027 204.686 130.608 1 72.64 ? C21 CDL 504 r 1 
HETATM 25 C C22 CDL . . . XA 31 240.092 204.376 129.087 1 69.96 ? C22 CDL 504 r 1 
HETATM 26 C C23 CDL . . . XA 31 241.219 205.172 128.391 1 72.36 ? C23 CDL 504 r 1 
HETATM 27 C C24 CDL . . . XA 31 240.917 205.448 126.896 1 69.86 ? C24 CDL 504 r 1 
HETATM 28 C C25 CDL . . . XA 31 241.818 206.551 126.317 1 69.57 ? C25 CDL 504 r 1 
HETATM 29 C C26 CDL . . . XA 31 243.292 206.388 126.75 1 72.07 ? C26 CDL 504 r 1 
HETATM 30 C C27 CDL . . . XA 31 244.004 205.254 126.007 1 73.43 ? C27 CDL 504 r 1 
HETATM 31 C CA6 CDL . . . XA 31 241.488 201.224 141.541 1 74.4 ? CA6 CDL 504 r 1 
HETATM 32 O OA8 CDL . . . XA 31 240.15 200.778 141.584 1 76.64 ? OA8 CDL 504 r 1 
HETATM 33 C CA7 CDL . . . XA 31 239.389 201.154 140.437 1 77.68 ? CA7 CDL 504 r 1 
HETATM 34 O OA9 CDL . . . XA 31 238.463 201.877 140.557 1 83.04 ? OA9 CDL 504 r 1 
HETATM 35 C C31 CDL . . . XA 31 239.776 200.623 139.045 1 74.05 ? C31 CDL 504 r 1 
HETATM 36 C C32 CDL . . . XA 31 238.589 200.612 138.088 1 71.68 ? C32 CDL 504 r 1 
HETATM 37 C C33 CDL . . . XA 31 238.43 201.95 137.353 1 68.04 ? C33 CDL 504 r 1 
HETATM 38 C C34 CDL . . . XA 31 237.33 201.89 136.272 1 71.57 ? C34 CDL 504 r 1 
HETATM 39 C C35 CDL . . . XA 31 235.977 202.427 136.802 1 66.3 ? C35 CDL 504 r 1 
HETATM 40 C C36 CDL . . . XA 31 234.785 201.95 135.944 1 69.58 ? C36 CDL 504 r 1 
HETATM 41 C C37 CDL . . . XA 31 234.558 202.852 134.721 1 66.52 ? C37 CDL 504 r 1 
HETATM 42 C C38 CDL . . . XA 31 234.69 202.085 133.401 1 66.82 ? C38 CDL 504 r 1 
HETATM 43 C C39 CDL . . . XA 31 236.122 202.118 132.837 1 67.86 ? C39 CDL 504 r 1 
HETATM 44 C C40 CDL . . . XA 31 236.423 200.875 131.973 1 69.58 ? C40 CDL 504 r 1 
HETATM 45 C C41 CDL . . . XA 31 237.847 200.926 131.321 1 67.49 ? C41 CDL 504 r 1 
HETATM 46 C C42 CDL . . . XA 31 238.502 199.52 131.275 1 70.61 ? C42 CDL 504 r 1 
HETATM 47 C C43 CDL . . . XA 31 239.478 199.346 130.077 1 66.69 ? C43 CDL 504 r 1 
HETATM 48 C C44 CDL . . . XA 31 240.004 197.89 129.974 1 68.43 ? C44 CDL 504 r 1 
HETATM 49 C C45 CDL . . . XA 31 240.39 197.328 131.339 1 72.52 ? C45 CDL 504 r 1 
HETATM 50 C C46 CDL . . . XA 31 241.055 195.942 131.248 1 71.13 ? C46 CDL 504 r 1 
HETATM 51 C C47 CDL . . . XA 31 240.819 195.112 132.506 1 71.55 ? C47 CDL 504 r 1 
HETATM 52 C CB2 CDL . . . XA 31 243.853 199.629 149.179 1 72.29 ? CB2 CDL 504 r 1 
HETATM 53 O OB2 CDL . . . XA 31 244.309 198.577 148.343 1 75.96 ? OB2 CDL 504 r 1 
HETATM 54 P PB2 CDL . . . XA 31 245.934 198.559 147.934 1 94.3 ? PB2 CDL 504 r 1 
HETATM 55 O OB3 CDL . . . XA 31 246.513 197.189 148.231 1 77.05 ? OB3 CDL 504 r 1 
HETATM 56 O OB4 CDL . . . XA 31 246.663 199.602 148.747 1 78.82 ? OB4 CDL 504 r 1 
HETATM 57 O OB5 CDL . . . XA 31 246.105 198.898 146.303 1 70.9 ? OB5 CDL 504 r 1 
HETATM 58 C CB3 CDL . . . XA 31 246.463 197.84 145.427 1 63.27 ? CB3 CDL 504 r 1 
HETATM 59 C CB4 CDL . . . XA 31 245.487 197.857 144.244 1 65.45 ? CB4 CDL 504 r 1 
HETATM 60 O OB6 CDL . . . XA 31 245.522 199.121 143.629 1 72.43 ? OB6 CDL 504 r 1 
HETATM 61 C CB5 CDL . . . XA 31 245.491 199.064 142.207 1 76.96 ? CB5 CDL 504 r 1 
HETATM 62 O OB7 CDL . . . XA 31 245.737 198.046 141.654 1 76.46 ? OB7 CDL 504 r 1 
HETATM 63 C C51 CDL . . . XA 31 245.138 200.316 141.379 1 74.34 ? C51 CDL 504 r 1 
HETATM 64 C C52 CDL . . . XA 31 245.115 200.007 139.873 1 71.63 ? C52 CDL 504 r 1 
HETATM 65 C C53 CDL . . . XA 31 245.196 201.274 139.008 1 67.67 ? C53 CDL 504 r 1 
HETATM 66 C C54 CDL . . . XA 31 243.846 202.014 138.917 1 67.6 ? C54 CDL 504 r 1 
HETATM 67 C C55 CDL . . . XA 31 243.252 201.963 137.502 1 65.71 ? C55 CDL 504 r 1 
HETATM 68 C C56 CDL . . . XA 31 242.138 203.023 137.303 1 65.65 ? C56 CDL 504 r 1 
HETATM 69 C C57 CDL . . . XA 31 241.967 203.437 135.828 1 76.21 ? C57 CDL 504 r 1 
HETATM 70 C C58 CDL . . . XA 31 242.33 202.295 134.849 1 75.83 ? C58 CDL 504 r 1 
HETATM 71 C C59 CDL . . . XA 31 241.076 201.623 134.238 1 71.71 ? C59 CDL 504 r 1 
HETATM 72 C C60 CDL . . . XA 31 241.439 200.591 133.154 1 70.01 ? C60 CDL 504 r 1 
HETATM 73 C C61 CDL . . . XA 31 242.672 201.015 132.31 1 73.99 ? C61 CDL 504 r 1 
HETATM 74 C C62 CDL . . . XA 31 242.288 201.432 130.874 1 75.05 ? C62 CDL 504 r 1 
HETATM 75 C C63 CDL . . . XA 31 243.356 201.052 129.838 1 71.42 ? C63 CDL 504 r 1 
HETATM 76 C C64 CDL . . . XA 31 244.242 202.245 129.442 1 76.64 ? C64 CDL 504 r 1 
HETATM 77 C C65 CDL . . . XA 31 245.704 201.852 129.269 1 75.16 ? C65 CDL 504 r 1 
HETATM 78 C C66 CDL . . . XA 31 246.564 203.015 128.786 1 72 ? C66 CDL 504 r 1 
HETATM 79 C CB6 CDL . . . XA 31 244.076 197.583 144.746 1 67.76 ? CB6 CDL 504 r 1 
HETATM 80 O OB8 CDL . . . XA 31 243.172 197.771 143.662 1 73.73 ? OB8 CDL 504 r 1 
HETATM 81 C CB7 CDL . . . XA 31 242.236 196.721 143.505 1 75.18 ? CB7 CDL 504 r 1 
HETATM 82 O OB9 CDL . . . XA 31 241.643 196.312 144.445 1 76.94 ? OB9 CDL 504 r 1 
HETATM 83 C C71 CDL . . . XA 31 241.974 196.116 142.108 1 66.09 ? C71 CDL 504 r 1 
HETATM 84 C C72 CDL . . . XA 31 241.253 197.111 141.191 1 67.24 ? C72 CDL 504 r 1 
HETATM 85 C C73 CDL . . . XA 31 239.901 196.579 140.689 1 73.15 ? C73 CDL 504 r 1 
HETATM 86 C C74 CDL . . . XA 31 239.653 196.931 139.215 1 73.84 ? C74 CDL 504 r 1 
HETATM 87 C C75 CDL . . . XA 31 240.829 196.485 138.306 1 72.11 ? C75 CDL 504 r 1 
HETATM 88 C C76 CDL . . . XA 31 241.504 197.685 137.595 1 73.3 ? C76 CDL 504 r 1 
HETATM 89 C C77 CDL . . . XA 31 241.21 197.717 136.067 1 72.28 ? C77 CDL 504 r 1 
HETATM 90 C C78 CDL . . . XA 31 242.495 197.621 135.235 1 73.02 ? C78 CDL 504 r 1 
HETATM 91 C C79 CDL . . . XA 31 243.614 198.533 135.785 1 75.63 ? C79 CDL 504 r 1 
HETATM 92 C C80 CDL . . . XA 31 244.859 198.569 134.861 1 72.67 ? C80 CDL 504 r 1 
HETATM 93 C C81 CDL . . . XA 31 245.637 199.878 134.99 1 72.23 ? C81 CDL 504 r 1 
HETATM 94 C C82 CDL . . . XA 31 246.7 200.047 133.865 1 72.32 ? C82 CDL 504 r 1 
HETATM 95 C C83 CDL . . . XA 31 247.127 201.516 133.677 1 73.49 ? C83 CDL 504 r 1 
HETATM 96 C C84 CDL . . . XA 31 246.081 202.338 132.887 1 71.26 ? C84 CDL 504 r 1 
HETATM 97 C C85 CDL . . . XA 31 245.586 203.575 133.66 1 67.3 ? C85 CDL 504 r 1 
HETATM 98 C C86 CDL . . . XA 31 244.587 204.4 132.844 1 68.19 ? C86 CDL 504 r 1 
HETATM 99 C C87 CDL . . . XA 31 244.094 205.635 133.595 1 64.65 ? C87 CDL 504 r 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    63 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           99 
#