data_7VY1
#
_model_server_result.job_id            AjXRjvq4oK5psXS8orXF4w 
_model_server_result.datetime_utc      '2024-11-14 22:43:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"RA","auth_seq_id":702}' 
#
_entry.id    7VY1 
#
_exptl.entry_id    7VY1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 31 EA N N 
? 31 HA N N 
? 31 LA N N 
? 31 MA N N 
? 31 RA N N 
? 31 TA N N 
? 31 XA N N 
? 31 ZA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 95 V CYS 95 1_555 D SG CYS 115 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 L SG CYS 113 d CYS 113 1_555 L SG CYS 125 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 P SG CYS 33 h CYS 33 1_555 P SG CYS 66 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 P SG CYS 43 h CYS 43 1_555 P SG CYS 56 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 AA SG CYS 88 u CYS 88 1_555 AA SG CYS 100 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 BA SG CYS 68 v CYS 69 1_555 BA SG CYS 79 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VY1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 401 401 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 30 PEE W 1 201 202 PEE PEE . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 31 CDL a 1 201 201 CDL CDL . 
IA 33 PLX a 1 202 101 PLX PLX . 
JA 30 PEE b 1 201 720 PEE PEE . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 30 PEE i 1 402 718 PEE PEE . 
OA 30 PEE j 1 201 101 PEE PEE . 
PA 33 PLX j 1 202 203 PLX PLX . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 713 CDL CDL . 
SA 30 PEE l 1 703 719 PEE PEE . 
TA 31 CDL o 1 201 203 CDL CDL . 
UA 30 PEE r 1 501 202 PEE PEE . 
VA 33 PLX r 1 502 205 PLX PLX . 
WA 33 PLX r 1 503 201 PLX PLX . 
XA 31 CDL r 1 504 712 CDL CDL . 
YA 34 UQ s 1 401 403 UQ UQ . 
ZA 31 CDL u 1 201 102 CDL CDL . 
AB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . RA 31 232.559 247.097 156.97 1 91.03 ? C1 CDL 702 l 1 
HETATM 2 O O1 CDL . . . RA 31 233.202 248.077 156.21 1 93.05 ? O1 CDL 702 l 1 
HETATM 3 C CA2 CDL . . . RA 31 231.057 247.125 156.591 1 91.12 ? CA2 CDL 702 l 1 
HETATM 4 O OA2 CDL . . . RA 31 230.959 247.732 155.312 1 97.16 ? OA2 CDL 702 l 1 
HETATM 5 P PA1 CDL . . . RA 31 229.661 248.709 154.98 1 109.41 ? PA1 CDL 702 l 1 
HETATM 6 O OA3 CDL . . . RA 31 228.377 247.942 155.173 1 93.88 ? OA3 CDL 702 l 1 
HETATM 7 O OA4 CDL . . . RA 31 229.679 249.89 155.902 1 95.48 ? OA4 CDL 702 l 1 
HETATM 8 O OA5 CDL . . . RA 31 229.771 249.228 153.408 1 90.02 ? OA5 CDL 702 l 1 
HETATM 9 C CA3 CDL . . . RA 31 228.619 249.781 152.794 1 88.71 ? CA3 CDL 702 l 1 
HETATM 10 C CA4 CDL . . . RA 31 229.071 250.741 151.704 1 93.6 ? CA4 CDL 702 l 1 
HETATM 11 O OA6 CDL . . . RA 31 228.722 250.223 150.448 1 98.87 ? OA6 CDL 702 l 1 
HETATM 12 C CA5 CDL . . . RA 31 227.514 250.75 149.912 1 94.26 ? CA5 CDL 702 l 1 
HETATM 13 O OA7 CDL . . . RA 31 226.882 251.545 150.536 1 93.65 ? OA7 CDL 702 l 1 
HETATM 14 C C11 CDL . . . RA 31 227.014 250.289 148.506 1 90.3 ? C11 CDL 702 l 1 
HETATM 15 C C12 CDL . . . RA 31 227.374 251.293 147.405 1 90.18 ? C12 CDL 702 l 1 
HETATM 16 C C13 CDL . . . RA 31 227.039 250.803 145.996 1 90.6 ? C13 CDL 702 l 1 
HETATM 17 C C14 CDL . . . RA 31 225.907 249.758 145.964 1 90.21 ? C14 CDL 702 l 1 
HETATM 18 C C15 CDL . . . RA 31 225.041 249.864 144.674 1 92.65 ? C15 CDL 702 l 1 
HETATM 19 C C16 CDL . . . RA 31 223.801 248.936 144.71 1 91.49 ? C16 CDL 702 l 1 
HETATM 20 C C17 CDL . . . RA 31 222.54 249.653 145.282 1 91.18 ? C17 CDL 702 l 1 
HETATM 21 C C18 CDL . . . RA 31 221.218 248.939 144.901 1 90.45 ? C18 CDL 702 l 1 
HETATM 22 C C19 CDL . . . RA 31 220.001 249.49 145.697 1 89.44 ? C19 CDL 702 l 1 
HETATM 23 C C20 CDL . . . RA 31 218.649 249.219 144.991 1 89.6 ? C20 CDL 702 l 1 
HETATM 24 C C21 CDL . . . RA 31 218.569 249.882 143.59 1 93.57 ? C21 CDL 702 l 1 
HETATM 25 C C22 CDL . . . RA 31 217.227 249.586 142.859 1 94.76 ? C22 CDL 702 l 1 
HETATM 26 C C23 CDL . . . RA 31 217.143 248.139 142.318 1 95.05 ? C23 CDL 702 l 1 
HETATM 27 C C24 CDL . . . RA 31 215.754 247.824 141.702 1 93.55 ? C24 CDL 702 l 1 
HETATM 28 C C25 CDL . . . RA 31 215.667 246.403 141.116 1 90.19 ? C25 CDL 702 l 1 
HETATM 29 C C26 CDL . . . RA 31 214.283 246.122 140.486 1 90.47 ? C26 CDL 702 l 1 
HETATM 30 C C27 CDL . . . RA 31 214.161 244.698 139.934 1 86.31 ? C27 CDL 702 l 1 
HETATM 31 C CA6 CDL . . . RA 31 230.599 250.913 151.781 1 89.89 ? CA6 CDL 702 l 1 
HETATM 32 O OA8 CDL . . . RA 31 231.151 250.398 150.588 1 94.52 ? OA8 CDL 702 l 1 
HETATM 33 C CA7 CDL . . . RA 31 231.515 251.408 149.647 1 93.66 ? CA7 CDL 702 l 1 
HETATM 34 O OA9 CDL . . . RA 31 231.181 252.527 149.823 1 94.54 ? OA9 CDL 702 l 1 
HETATM 35 C C31 CDL . . . RA 31 232.336 251.037 148.399 1 90.13 ? C31 CDL 702 l 1 
HETATM 36 C C32 CDL . . . RA 31 231.533 251.208 147.114 1 89.1 ? C32 CDL 702 l 1 
HETATM 37 C C33 CDL . . . RA 31 232.441 251.491 145.911 1 90.21 ? C33 CDL 702 l 1 
HETATM 38 C C34 CDL . . . RA 31 232.87 252.973 145.84 1 89.38 ? C34 CDL 702 l 1 
HETATM 39 C C35 CDL . . . RA 31 233.098 253.438 144.379 1 89.13 ? C35 CDL 702 l 1 
HETATM 40 C C36 CDL . . . RA 31 231.769 253.594 143.604 1 89.18 ? C36 CDL 702 l 1 
HETATM 41 C C37 CDL . . . RA 31 231.909 254.492 142.363 1 89.72 ? C37 CDL 702 l 1 
HETATM 42 C C38 CDL . . . RA 31 233.072 255.486 142.475 1 88.87 ? C38 CDL 702 l 1 
HETATM 43 C C39 CDL . . . RA 31 233.287 256.267 141.165 1 88.71 ? C39 CDL 702 l 1 
HETATM 44 C C40 CDL . . . RA 31 234.622 255.902 140.481 1 87.47 ? C40 CDL 702 l 1 
HETATM 45 C C41 CDL . . . RA 31 234.724 256.491 139.031 1 91.62 ? C41 CDL 702 l 1 
HETATM 46 C C42 CDL . . . RA 31 233.366 256.442 138.279 1 92.16 ? C42 CDL 702 l 1 
HETATM 47 C C43 CDL . . . RA 31 233.536 256.138 136.763 1 91.97 ? C43 CDL 702 l 1 
HETATM 48 C C44 CDL . . . RA 31 234.684 256.962 136.121 1 93.39 ? C44 CDL 702 l 1 
HETATM 49 C C45 CDL . . . RA 31 234.774 256.759 134.61 1 93.09 ? C45 CDL 702 l 1 
HETATM 50 C C46 CDL . . . RA 31 233.881 257.745 133.831 1 93.67 ? C46 CDL 702 l 1 
HETATM 51 C C47 CDL . . . RA 31 233.541 257.239 132.432 1 90.4 ? C47 CDL 702 l 1 
HETATM 52 C CB2 CDL . . . RA 31 233.235 245.724 156.64 1 88.33 ? CB2 CDL 702 l 1 
HETATM 53 O OB2 CDL . . . RA 31 234.321 245.976 155.758 1 92.6 ? OB2 CDL 702 l 1 
HETATM 54 P PB2 CDL . . . RA 31 235.267 244.684 155.264 1 97.14 ? PB2 CDL 702 l 1 
HETATM 55 O OB3 CDL . . . RA 31 236.665 244.837 155.83 1 90.69 ? OB3 CDL 702 l 1 
HETATM 56 O OB4 CDL . . . RA 31 234.661 243.393 155.759 1 90.6 ? OB4 CDL 702 l 1 
HETATM 57 O OB5 CDL . . . RA 31 235.347 244.666 153.593 1 88.65 ? OB5 CDL 702 l 1 
HETATM 58 C CB3 CDL . . . RA 31 235.143 245.89 152.903 1 86.88 ? CB3 CDL 702 l 1 
HETATM 59 C CB4 CDL . . . RA 31 234.643 245.568 151.49 1 86.1 ? CB4 CDL 702 l 1 
HETATM 60 O OB6 CDL . . . RA 31 234.922 246.649 150.636 1 88.55 ? OB6 CDL 702 l 1 
HETATM 61 C CB5 CDL . . . RA 31 236.119 246.506 149.879 1 87.96 ? CB5 CDL 702 l 1 
HETATM 62 O OB7 CDL . . . RA 31 236.944 245.722 150.208 1 88.09 ? OB7 CDL 702 l 1 
HETATM 63 C C51 CDL . . . RA 31 236.34 247.381 148.629 1 85.38 ? C51 CDL 702 l 1 
HETATM 64 C C52 CDL . . . RA 31 235.009 247.734 147.945 1 83.72 ? C52 CDL 702 l 1 
HETATM 65 C C53 CDL . . . RA 31 235.131 247.807 146.416 1 86.39 ? C53 CDL 702 l 1 
HETATM 66 C C54 CDL . . . RA 31 235.808 249.11 145.947 1 89.82 ? C54 CDL 702 l 1 
HETATM 67 C C55 CDL . . . RA 31 236.793 248.87 144.795 1 86.19 ? C55 CDL 702 l 1 
HETATM 68 C C56 CDL . . . RA 31 236.071 248.7 143.434 1 86.35 ? C56 CDL 702 l 1 
HETATM 69 C C57 CDL . . . RA 31 234.972 249.759 143.22 1 87.28 ? C57 CDL 702 l 1 
HETATM 70 C C58 CDL . . . RA 31 235.223 250.595 141.942 1 89.21 ? C58 CDL 702 l 1 
HETATM 71 C C59 CDL . . . RA 31 234.429 250.056 140.728 1 89.65 ? C59 CDL 702 l 1 
HETATM 72 C C60 CDL . . . RA 31 232.967 250.539 140.72 1 92.41 ? C60 CDL 702 l 1 
HETATM 73 C C61 CDL . . . RA 31 232.726 251.752 139.776 1 91.89 ? C61 CDL 702 l 1 
HETATM 74 C C62 CDL . . . RA 31 233.921 252.056 138.843 1 90.06 ? C62 CDL 702 l 1 
HETATM 75 C C63 CDL . . . RA 31 233.755 251.417 137.457 1 92.3 ? C63 CDL 702 l 1 
HETATM 76 C C64 CDL . . . RA 31 235.003 251.586 136.578 1 88.68 ? C64 CDL 702 l 1 
HETATM 77 C C65 CDL . . . RA 31 234.688 251.49 135.089 1 88.28 ? C65 CDL 702 l 1 
HETATM 78 C C66 CDL . . . RA 31 234.2 252.812 134.506 1 90.46 ? C66 CDL 702 l 1 
HETATM 79 C C67 CDL . . . RA 31 232.69 252.826 134.275 1 89.03 ? C67 CDL 702 l 1 
HETATM 80 C CB6 CDL . . . RA 31 233.138 245.348 151.536 1 85.47 ? CB6 CDL 702 l 1 
HETATM 81 O OB8 CDL . . . RA 31 232.532 246.307 150.678 1 87.95 ? OB8 CDL 702 l 1 
HETATM 82 C CB7 CDL . . . RA 31 231.246 245.929 150.225 1 88.99 ? CB7 CDL 702 l 1 
HETATM 83 O OB9 CDL . . . RA 31 230.332 245.913 150.978 1 91.16 ? OB9 CDL 702 l 1 
HETATM 84 C C71 CDL . . . RA 31 231.037 245.531 148.747 1 88.73 ? C71 CDL 702 l 1 
HETATM 85 C C72 CDL . . . RA 31 229.981 246.4 148.055 1 88.63 ? C72 CDL 702 l 1 
HETATM 86 C C73 CDL . . . RA 31 230.613 247.401 147.073 1 90.14 ? C73 CDL 702 l 1 
HETATM 87 C C74 CDL . . . RA 31 230.588 246.885 145.627 1 89.75 ? C74 CDL 702 l 1 
HETATM 88 C C75 CDL . . . RA 31 229.977 247.913 144.638 1 92 ? C75 CDL 702 l 1 
HETATM 89 C C76 CDL . . . RA 31 230.953 248.275 143.488 1 91.06 ? C76 CDL 702 l 1 
HETATM 90 C C77 CDL . . . RA 31 230.329 248.084 142.072 1 90.11 ? C77 CDL 702 l 1 
HETATM 91 C C78 CDL . . . RA 31 228.84 247.71 142.117 1 91.19 ? C78 CDL 702 l 1 
HETATM 92 C C79 CDL . . . RA 31 228.361 247.011 140.825 1 88.16 ? C79 CDL 702 l 1 
HETATM 93 C C80 CDL . . . RA 31 226.853 246.655 140.876 1 86.91 ? C80 CDL 702 l 1 
HETATM 94 C C81 CDL . . . RA 31 226.386 245.93 139.614 1 88.74 ? C81 CDL 702 l 1 
HETATM 95 C C82 CDL . . . RA 31 224.845 246.022 139.408 1 90.04 ? C82 CDL 702 l 1 
HETATM 96 C C83 CDL . . . RA 31 224.047 245.339 140.536 1 89.33 ? C83 CDL 702 l 1 
HETATM 97 C C84 CDL . . . RA 31 222.55 245.732 140.505 1 89.61 ? C84 CDL 702 l 1 
HETATM 98 C C85 CDL . . . RA 31 221.799 245.347 141.795 1 89.86 ? C85 CDL 702 l 1 
HETATM 99 C C86 CDL . . . RA 31 220.328 245.771 141.758 1 88.76 ? C86 CDL 702 l 1 
HETATM 100 C C87 CDL . . . RA 31 219.582 245.41 143.041 1 88.05 ? C87 CDL 702 l 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    54 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           100 
#