data_7VY3 # _model_server_result.job_id l8iC1Se8TV1RhWXKYceC-w _model_server_result.datetime_utc '2025-02-26 07:48:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"FD","auth_seq_id":101}' # _entry.id 7VY3 # _exptl.entry_id 7VY3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 229.402 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 25-meric _pdbx_struct_assembly.oligomeric_count 25 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 EA N N ? 11 TA N N ? 11 YC N N ? 11 FD N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C FME 1 A FME 1 1_555 D N SER 2 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 F C FME 1 D FME 1 1_555 F N SER 2 D SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 H C FME 1 F FME 1 1_555 H N SER 2 F SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 J C FME 1 I FME 1 1_555 J N SER 2 I SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 L C FME 1 K FME 1 1_555 L N SER 2 K SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 N C FME 1 O FME 1 1_555 N N SER 2 O SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 P C FME 1 Q FME 1 1_555 P N SER 2 Q SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 R C FME 1 S FME 1 1_555 R N SER 2 S SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 B NE2 HIS 219 M HIS 219 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc4 B OE1 GLU 234 M GLU 234 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 B OE2 GLU 234 M GLU 234 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc6 B NE2 HIS 266 M HIS 266 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 741 n n N1 CM1 LDA sing 742 n n N1 CM2 LDA sing 743 n n N1 C1 LDA sing 744 n n CM1 HM11 LDA sing 745 n n CM1 HM12 LDA sing 746 n n CM1 HM13 LDA sing 747 n n CM2 HM21 LDA sing 748 n n CM2 HM22 LDA sing 749 n n CM2 HM23 LDA sing 750 n n C1 C2 LDA sing 751 n n C1 H11 LDA sing 752 n n C1 H12 LDA sing 753 n n C2 C3 LDA sing 754 n n C2 H21 LDA sing 755 n n C2 H22 LDA sing 756 n n C3 C4 LDA sing 757 n n C3 H31 LDA sing 758 n n C3 H32 LDA sing 759 n n C4 C5 LDA sing 760 n n C4 H41 LDA sing 761 n n C4 H42 LDA sing 762 n n C5 C6 LDA sing 763 n n C5 H51 LDA sing 764 n n C5 H52 LDA sing 765 n n C6 C7 LDA sing 766 n n C6 H61 LDA sing 767 n n C6 H62 LDA sing 768 n n C7 C8 LDA sing 769 n n C7 H71 LDA sing 770 n n C7 H72 LDA sing 771 n n C8 C9 LDA sing 772 n n C8 H81 LDA sing 773 n n C8 H82 LDA sing 774 n n C9 C10 LDA sing 775 n n C9 H91 LDA sing 776 n n C9 H92 LDA sing 777 n n C10 C11 LDA sing 778 n n C10 H101 LDA sing 779 n n C10 H102 LDA sing 780 n n C11 C12 LDA sing 781 n n C11 H111 LDA sing 782 n n C11 H112 LDA sing 783 n n C12 H121 LDA sing 784 n n C12 H122 LDA sing 785 n n C12 H123 LDA sing 786 n n # _atom_sites.entry_id 7VY3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Z 7 BCL L 1 301 301 BCL BCL . AA 8 BPH L 1 302 302 BPH BPH . BA 9 U10 L 1 303 310 U10 U10 . CA 9 U10 L 1 304 311 U10 U10 . DA 10 PGV L 1 305 316 PGV PGV . EA 11 LDA L 1 306 317 LDA LDA . FA 12 LMT L 1 307 319 LMT LMT . GA 12 LMT L 1 308 320 LMT LMT . HA 7 BCL L 1 309 402 BCL BCL . IA 7 BCL M 1 401 401 BCL BCL . JA 7 BCL M 1 402 403 BCL BCL . KA 8 BPH M 1 403 404 BPH BPH . LA 13 FE M 1 404 410 FE FE . MA 14 SPO M 1 405 412 SPO SPO . NA 12 LMT M 1 406 413 LMT LMT . OA 12 LMT M 1 407 415 LMT LMT . PA 15 CDL M 1 408 419 CDL CDL . QA 10 PGV M 1 409 421 PGV PGV . RA 9 U10 M 1 410 501 U10 U10 . SA 10 PGV H 1 301 315 PGV PGV . TA 11 LDA H 1 302 318 LDA LDA . UA 12 LMT H 1 303 417 LMT LMT . VA 12 LMT H 1 304 301 LMT LMT . WA 12 LMT H 1 305 303 LMT LMT . XA 16 PTY H 1 306 400 PTY PTY . YA 15 CDL H 1 307 401 CDL CDL . ZA 12 LMT A 1 101 312 LMT LMT . AB 12 LMT A 1 102 313 LMT LMT . BB 7 BCL A 1 103 101 BCL BCL . CB 14 SPO B 1 101 110 SPO SPO . DB 12 LMT B 1 102 201 LMT LMT . EB 7 BCL B 1 103 101 BCL BCL . FB 14 SPO B 1 104 111 SPO SPO . GB 7 BCL D 1 101 101 BCL BCL . HB 14 SPO D 1 102 110 SPO SPO . IB 12 LMT D 1 103 201 LMT LMT . JB 14 SPO D 1 104 110 SPO SPO . KB 9 U10 D 1 105 106 U10 U10 . LB 7 BCL E 1 101 101 BCL BCL . MB 7 BCL F 1 101 101 BCL BCL . NB 10 PGV F 1 102 105 PGV PGV . OB 10 PGV F 1 103 106 PGV PGV . PB 16 PTY F 1 104 107 PTY PTY . QB 14 SPO F 1 105 111 SPO SPO . RB 12 LMT F 1 106 201 LMT LMT . SB 7 BCL G 1 101 101 BCL BCL . TB 14 SPO G 1 102 110 SPO SPO . UB 14 SPO G 1 103 111 SPO SPO . VB 12 LMT I 1 101 314 LMT LMT . WB 7 BCL I 1 102 101 BCL BCL . XB 12 LMT I 1 103 201 LMT LMT . YB 7 BCL J 1 101 101 BCL BCL . ZB 14 SPO J 1 102 111 SPO SPO . AC 12 LMT K 1 101 302 LMT LMT . BC 7 BCL K 1 102 101 BCL BCL . CC 14 SPO K 1 103 110 SPO SPO . DC 10 PGV K 1 104 201 PGV PGV . EC 14 SPO K 1 105 110 SPO SPO . FC 7 BCL N 1 101 101 BCL BCL . GC 7 BCL O 1 101 101 BCL BCL . HC 14 SPO O 1 102 111 SPO SPO . IC 7 BCL P 1 101 101 BCL BCL . JC 14 SPO P 1 102 111 SPO SPO . KC 12 LMT Q 1 101 414 LMT LMT . LC 12 LMT Q 1 102 416 LMT LMT . MC 10 PGV Q 1 103 422 PGV PGV . NC 7 BCL Q 1 104 101 BCL BCL . OC 14 SPO Q 1 105 110 SPO SPO . PC 7 BCL Q 1 106 101 BCL BCL . QC 7 BCL S 1 101 101 BCL BCL . RC 14 SPO S 1 102 110 SPO SPO . SC 14 SPO S 1 103 111 SPO SPO . TC 7 BCL T 1 101 101 BCL BCL . UC 7 BCL V 1 101 101 BCL BCL . VC 14 SPO V 1 102 110 SPO SPO . WC 14 SPO V 1 103 111 SPO SPO . XC 7 BCL W 1 101 101 BCL BCL . YC 11 LDA Y 1 101 418 LDA LDA . ZC 15 CDL Y 1 102 420 CDL CDL . AD 7 BCL Y 1 103 101 BCL BCL . BD 10 PGV Y 1 104 201 PGV PGV . CD 14 SPO Z 1 101 110 SPO SPO . DD 7 BCL Z 1 102 101 BCL BCL . ED 7 BCL 1 1 101 101 BCL BCL . FD 11 LDA X 1 101 102 LDA LDA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . FD 11 114.29 146.845 175.642 1 45.03 ? N1 LDA 101 X 1 HETATM 2 O O1 LDA . . . FD 11 113.419 147.68 175.32 1 45.03 ? O1 LDA 101 X 1 HETATM 3 C CM1 LDA . . . FD 11 114.055 146.411 177.025 1 45.03 ? CM1 LDA 101 X 1 HETATM 4 C CM2 LDA . . . FD 11 115.62 147.462 175.549 1 45.03 ? CM2 LDA 101 X 1 HETATM 5 C C1 LDA . . . FD 11 114.214 145.679 174.746 1 45.03 ? C1 LDA 101 X 1 HETATM 6 C C2 LDA . . . FD 11 114.611 146.087 173.332 1 45.03 ? C2 LDA 101 X 1 HETATM 7 C C3 LDA . . . FD 11 114.587 144.902 172.376 1 45.03 ? C3 LDA 101 X 1 HETATM 8 C C4 LDA . . . FD 11 115.242 145.287 171.057 1 45.03 ? C4 LDA 101 X 1 HETATM 9 C C5 LDA . . . FD 11 115.165 144.163 170.032 1 45.03 ? C5 LDA 101 X 1 HETATM 10 C C6 LDA . . . FD 11 115.873 144.575 168.747 1 45.03 ? C6 LDA 101 X 1 HETATM 11 C C7 LDA . . . FD 11 115.693 143.532 167.654 1 45.03 ? C7 LDA 101 X 1 HETATM 12 C C8 LDA . . . FD 11 116.437 143.942 166.391 1 45.03 ? C8 LDA 101 X 1 HETATM 13 C C9 LDA . . . FD 11 115.968 143.121 165.198 1 45.03 ? C9 LDA 101 X 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #