data_7VY3 # _model_server_result.job_id 4CyYyzjXJw_BQ0vGUWtSdg _model_server_result.datetime_utc '2025-02-26 07:43:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"UA","auth_seq_id":303}' # _entry.id 7VY3 # _exptl.entry_id 7VY3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 25-meric _pdbx_struct_assembly.oligomeric_count 25 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 FA N N ? 12 GA N N ? 12 NA N N ? 12 OA N N ? 12 UA N N ? 12 VA N N ? 12 WA N N ? 12 ZA N N ? 12 AB N N ? 12 DB N N ? 12 IB N N ? 12 RB N N ? 12 VB N N ? 12 XB N N ? 12 AC N N ? 12 KC N N ? 12 LC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C FME 1 A FME 1 1_555 D N SER 2 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 F C FME 1 D FME 1 1_555 F N SER 2 D SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 H C FME 1 F FME 1 1_555 H N SER 2 F SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 J C FME 1 I FME 1 1_555 J N SER 2 I SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 L C FME 1 K FME 1 1_555 L N SER 2 K SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 N C FME 1 O FME 1 1_555 N N SER 2 O SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 P C FME 1 Q FME 1 1_555 P N SER 2 Q SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 R C FME 1 S FME 1 1_555 R N SER 2 S SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 B NE2 HIS 219 M HIS 219 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc4 B OE1 GLU 234 M GLU 234 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 B OE2 GLU 234 M GLU 234 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc6 B NE2 HIS 266 M HIS 266 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 808 n n C1B O1B LMT sing 809 n n C1B O5B LMT sing 810 n n C1B H1B LMT sing 811 n n C2B C3B LMT sing 812 n n C2B O2B LMT sing 813 n n C2B H2B LMT sing 814 n n C3B C4B LMT sing 815 n n C3B O3B LMT sing 816 n n C3B H3B LMT sing 817 n n C4B C5B LMT sing 818 n n C4B O4' LMT sing 819 n n C4B H4B LMT sing 820 n n C5B C6B LMT sing 821 n n C5B O5B LMT sing 822 n n C5B H5B LMT sing 823 n n C6B O6B LMT sing 824 n n C6B "H6'2" LMT sing 825 n n C6B "H6'1" LMT sing 826 n n O1B C4' LMT sing 827 n n O2B H2O1 LMT sing 828 n n O3B H3O1 LMT sing 829 n n O4' H4O1 LMT sing 830 n n O6B H6B LMT sing 831 n n C1' C2' LMT sing 832 n n C1' O1' LMT sing 833 n n C1' O5' LMT sing 834 n n C1' H1' LMT sing 835 n n C2' C3' LMT sing 836 n n C2' O2' LMT sing 837 n n C2' H2' LMT sing 838 n n C3' C4' LMT sing 839 n n C3' O3' LMT sing 840 n n C3' H3' LMT sing 841 n n C4' C5' LMT sing 842 n n C4' H4' LMT sing 843 n n C5' C6' LMT sing 844 n n C5' O5' LMT sing 845 n n C5' H5' LMT sing 846 n n C6' O6' LMT sing 847 n n C6' H6D LMT sing 848 n n C6' H6E LMT sing 849 n n O1' C1 LMT sing 850 n n O2' H2O2 LMT sing 851 n n O3' H3O2 LMT sing 852 n n O6' H6' LMT sing 853 n n C1 C2 LMT sing 854 n n C1 H12 LMT sing 855 n n C1 H11 LMT sing 856 n n C2 C3 LMT sing 857 n n C2 H22 LMT sing 858 n n C2 H21 LMT sing 859 n n C3 C4 LMT sing 860 n n C3 H32 LMT sing 861 n n C3 H31 LMT sing 862 n n C4 C5 LMT sing 863 n n C4 H42 LMT sing 864 n n C4 H41 LMT sing 865 n n C5 C6 LMT sing 866 n n C5 H52 LMT sing 867 n n C5 H51 LMT sing 868 n n C6 C7 LMT sing 869 n n C6 H62 LMT sing 870 n n C6 H61 LMT sing 871 n n C7 C8 LMT sing 872 n n C7 H72 LMT sing 873 n n C7 H71 LMT sing 874 n n C8 C9 LMT sing 875 n n C8 H82 LMT sing 876 n n C8 H81 LMT sing 877 n n C9 C10 LMT sing 878 n n C9 H92 LMT sing 879 n n C9 H91 LMT sing 880 n n C10 C11 LMT sing 881 n n C10 H102 LMT sing 882 n n C10 H101 LMT sing 883 n n C11 C12 LMT sing 884 n n C11 H112 LMT sing 885 n n C11 H111 LMT sing 886 n n C12 H123 LMT sing 887 n n C12 H122 LMT sing 888 n n C12 H121 LMT sing 889 n n # _atom_sites.entry_id 7VY3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Z 7 BCL L 1 301 301 BCL BCL . AA 8 BPH L 1 302 302 BPH BPH . BA 9 U10 L 1 303 310 U10 U10 . CA 9 U10 L 1 304 311 U10 U10 . DA 10 PGV L 1 305 316 PGV PGV . EA 11 LDA L 1 306 317 LDA LDA . FA 12 LMT L 1 307 319 LMT LMT . GA 12 LMT L 1 308 320 LMT LMT . HA 7 BCL L 1 309 402 BCL BCL . IA 7 BCL M 1 401 401 BCL BCL . JA 7 BCL M 1 402 403 BCL BCL . KA 8 BPH M 1 403 404 BPH BPH . LA 13 FE M 1 404 410 FE FE . MA 14 SPO M 1 405 412 SPO SPO . NA 12 LMT M 1 406 413 LMT LMT . OA 12 LMT M 1 407 415 LMT LMT . PA 15 CDL M 1 408 419 CDL CDL . QA 10 PGV M 1 409 421 PGV PGV . RA 9 U10 M 1 410 501 U10 U10 . SA 10 PGV H 1 301 315 PGV PGV . TA 11 LDA H 1 302 318 LDA LDA . UA 12 LMT H 1 303 417 LMT LMT . VA 12 LMT H 1 304 301 LMT LMT . WA 12 LMT H 1 305 303 LMT LMT . XA 16 PTY H 1 306 400 PTY PTY . YA 15 CDL H 1 307 401 CDL CDL . ZA 12 LMT A 1 101 312 LMT LMT . AB 12 LMT A 1 102 313 LMT LMT . BB 7 BCL A 1 103 101 BCL BCL . CB 14 SPO B 1 101 110 SPO SPO . DB 12 LMT B 1 102 201 LMT LMT . EB 7 BCL B 1 103 101 BCL BCL . FB 14 SPO B 1 104 111 SPO SPO . GB 7 BCL D 1 101 101 BCL BCL . HB 14 SPO D 1 102 110 SPO SPO . IB 12 LMT D 1 103 201 LMT LMT . JB 14 SPO D 1 104 110 SPO SPO . KB 9 U10 D 1 105 106 U10 U10 . LB 7 BCL E 1 101 101 BCL BCL . MB 7 BCL F 1 101 101 BCL BCL . NB 10 PGV F 1 102 105 PGV PGV . OB 10 PGV F 1 103 106 PGV PGV . PB 16 PTY F 1 104 107 PTY PTY . QB 14 SPO F 1 105 111 SPO SPO . RB 12 LMT F 1 106 201 LMT LMT . SB 7 BCL G 1 101 101 BCL BCL . TB 14 SPO G 1 102 110 SPO SPO . UB 14 SPO G 1 103 111 SPO SPO . VB 12 LMT I 1 101 314 LMT LMT . WB 7 BCL I 1 102 101 BCL BCL . XB 12 LMT I 1 103 201 LMT LMT . YB 7 BCL J 1 101 101 BCL BCL . ZB 14 SPO J 1 102 111 SPO SPO . AC 12 LMT K 1 101 302 LMT LMT . BC 7 BCL K 1 102 101 BCL BCL . CC 14 SPO K 1 103 110 SPO SPO . DC 10 PGV K 1 104 201 PGV PGV . EC 14 SPO K 1 105 110 SPO SPO . FC 7 BCL N 1 101 101 BCL BCL . GC 7 BCL O 1 101 101 BCL BCL . HC 14 SPO O 1 102 111 SPO SPO . IC 7 BCL P 1 101 101 BCL BCL . JC 14 SPO P 1 102 111 SPO SPO . KC 12 LMT Q 1 101 414 LMT LMT . LC 12 LMT Q 1 102 416 LMT LMT . MC 10 PGV Q 1 103 422 PGV PGV . NC 7 BCL Q 1 104 101 BCL BCL . OC 14 SPO Q 1 105 110 SPO SPO . PC 7 BCL Q 1 106 101 BCL BCL . QC 7 BCL S 1 101 101 BCL BCL . RC 14 SPO S 1 102 110 SPO SPO . SC 14 SPO S 1 103 111 SPO SPO . TC 7 BCL T 1 101 101 BCL BCL . UC 7 BCL V 1 101 101 BCL BCL . VC 14 SPO V 1 102 110 SPO SPO . WC 14 SPO V 1 103 111 SPO SPO . XC 7 BCL W 1 101 101 BCL BCL . YC 11 LDA Y 1 101 418 LDA LDA . ZC 15 CDL Y 1 102 420 CDL CDL . AD 7 BCL Y 1 103 101 BCL BCL . BD 10 PGV Y 1 104 201 PGV PGV . CD 14 SPO Z 1 101 110 SPO SPO . DD 7 BCL Z 1 102 101 BCL BCL . ED 7 BCL 1 1 101 101 BCL BCL . FD 11 LDA X 1 101 102 LDA LDA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . UA 12 129.288 178.733 169.582 1 36.56 ? C1B LMT 303 H 1 HETATM 2 C C2B LMT . . . UA 12 129.545 179.672 170.755 1 36.56 ? C2B LMT 303 H 1 HETATM 3 C C3B LMT . . . UA 12 130.328 178.978 171.86 1 36.56 ? C3B LMT 303 H 1 HETATM 4 C C4B LMT . . . UA 12 129.714 177.631 172.21 1 36.56 ? C4B LMT 303 H 1 HETATM 5 C C5B LMT . . . UA 12 129.491 176.801 170.955 1 36.56 ? C5B LMT 303 H 1 HETATM 6 C C6B LMT . . . UA 12 128.814 175.478 171.287 1 36.56 ? C6B LMT 303 H 1 HETATM 7 O O1B LMT . . . UA 12 130.52 178.429 168.934 1 36.56 ? O1B LMT 303 H 1 HETATM 8 O O2B LMT . . . UA 12 130.283 180.813 170.304 1 36.56 ? O2B LMT 303 H 1 HETATM 9 O O3B LMT . . . UA 12 130.319 179.808 173.024 1 36.56 ? O3B LMT 303 H 1 HETATM 10 O O4' LMT . . . UA 12 130.59 176.932 173.097 1 36.56 ? O4' LMT 303 H 1 HETATM 11 O O5B LMT . . . UA 12 128.672 177.529 170.04 1 36.56 ? O5B LMT 303 H 1 HETATM 12 O O6B LMT . . . UA 12 128.492 174.799 170.069 1 36.56 ? O6B LMT 303 H 1 HETATM 13 C C1' LMT . . . UA 12 131.558 177.862 164.951 1 36.56 ? C1' LMT 303 H 1 HETATM 14 C C2' LMT . . . UA 12 130.651 179.054 165.228 1 36.56 ? C2' LMT 303 H 1 HETATM 15 C C3' LMT . . . UA 12 130.674 179.387 166.716 1 36.56 ? C3' LMT 303 H 1 HETATM 16 C C4' LMT . . . UA 12 130.345 178.15 167.546 1 36.56 ? C4' LMT 303 H 1 HETATM 17 C C5' LMT . . . UA 12 131.268 177.007 167.145 1 36.56 ? C5' LMT 303 H 1 HETATM 18 C C6' LMT . . . UA 12 130.944 175.72 167.892 1 36.56 ? C6' LMT 303 H 1 HETATM 19 O O1' LMT . . . UA 12 131.472 177.458 163.589 1 36.56 ? O1' LMT 303 H 1 HETATM 20 O O2' LMT . . . UA 12 131.092 180.191 164.477 1 36.56 ? O2' LMT 303 H 1 HETATM 21 O O3' LMT . . . UA 12 129.739 180.437 166.983 1 36.56 ? O3' LMT 303 H 1 HETATM 22 O O5' LMT . . . UA 12 131.139 176.76 165.75 1 36.56 ? O5' LMT 303 H 1 HETATM 23 O O6' LMT . . . UA 12 129.837 175.071 167.26 1 36.56 ? O6' LMT 303 H 1 HETATM 24 C C1 LMT . . . UA 12 132.12 176.198 163.424 1 36.56 ? C1 LMT 303 H 1 HETATM 25 C C2 LMT . . . UA 12 131.799 175.605 162.06 1 36.56 ? C2 LMT 303 H 1 HETATM 26 C C3 LMT . . . UA 12 133.083 175.332 161.292 1 36.56 ? C3 LMT 303 H 1 HETATM 27 C C4 LMT . . . UA 12 133.783 176.638 160.954 1 36.56 ? C4 LMT 303 H 1 HETATM 28 C C5 LMT . . . UA 12 135.294 176.459 160.934 1 36.56 ? C5 LMT 303 H 1 HETATM 29 C C6 LMT . . . UA 12 135.716 175.298 160.045 1 36.56 ? C6 LMT 303 H 1 HETATM 30 C C7 LMT . . . UA 12 137.189 175.426 159.681 1 36.56 ? C7 LMT 303 H 1 HETATM 31 C C8 LMT . . . UA 12 137.678 174.215 158.897 1 36.56 ? C8 LMT 303 H 1 HETATM 32 C C9 LMT . . . UA 12 139.098 174.443 158.395 1 36.56 ? C9 LMT 303 H 1 HETATM 33 C C10 LMT . . . UA 12 139.761 173.132 157.993 1 36.56 ? C10 LMT 303 H 1 HETATM 34 C C11 LMT . . . UA 12 141.207 173.36 157.572 1 36.56 ? C11 LMT 303 H 1 HETATM 35 C C12 LMT . . . UA 12 141.834 172.072 157.087 1 36.56 ? C12 LMT 303 H 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #