data_7VY3
#
_model_server_result.job_id            kbtplXHofG0Odylx-zcJmw 
_model_server_result.datetime_utc      '2025-02-26 08:14:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"NA","auth_seq_id":406}' 
#
_entry.id    7VY3 
#
_exptl.entry_id    7VY3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          12 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    17 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY3 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    25-meric 
_pdbx_struct_assembly.oligomeric_count      25 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 12 FA N N 
? 12 GA N N 
? 12 NA N N 
? 12 OA N N 
? 12 UA N N 
? 12 VA N N 
? 12 WA N N 
? 12 ZA N N 
? 12 AB N N 
? 12 DB N N 
? 12 IB N N 
? 12 RB N N 
? 12 VB N N 
? 12 XB N N 
? 12 AC N N 
? 12 KC N N 
? 12 LC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D C FME 1 A FME 1 1_555 D N SER 2 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 F C FME 1 D FME 1 1_555 F N SER 2 D SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 H C FME 1 F FME 1 1_555 H N SER 2 F SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 J C FME 1 I FME 1 1_555 J N SER 2 I SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 L C FME 1 K FME 1 1_555 L N SER 2 K SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 N C FME 1 O FME 1 1_555 N N SER 2 O SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale7 P C FME 1 Q FME 1 1_555 P N SER 2 Q SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 R C FME 1 S FME 1 1_555 R N SER 2 S SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc3 B NE2 HIS 219 M HIS 219 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc4 B OE1 GLU 234 M GLU 234 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc5 B OE2 GLU 234 M GLU 234 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc6 B NE2 HIS 266 M HIS 266 1_555 LA FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 808 n n 
C1B O1B LMT sing 809 n n 
C1B O5B LMT sing 810 n n 
C1B H1B LMT sing 811 n n 
C2B C3B LMT sing 812 n n 
C2B O2B LMT sing 813 n n 
C2B H2B LMT sing 814 n n 
C3B C4B LMT sing 815 n n 
C3B O3B LMT sing 816 n n 
C3B H3B LMT sing 817 n n 
C4B C5B LMT sing 818 n n 
C4B O4' LMT sing 819 n n 
C4B H4B LMT sing 820 n n 
C5B C6B LMT sing 821 n n 
C5B O5B LMT sing 822 n n 
C5B H5B LMT sing 823 n n 
C6B O6B LMT sing 824 n n 
C6B "H6'2" LMT sing 825 n n 
C6B "H6'1" LMT sing 826 n n 
O1B C4' LMT sing 827 n n 
O2B H2O1 LMT sing 828 n n 
O3B H3O1 LMT sing 829 n n 
O4' H4O1 LMT sing 830 n n 
O6B H6B LMT sing 831 n n 
C1' C2' LMT sing 832 n n 
C1' O1' LMT sing 833 n n 
C1' O5' LMT sing 834 n n 
C1' H1' LMT sing 835 n n 
C2' C3' LMT sing 836 n n 
C2' O2' LMT sing 837 n n 
C2' H2' LMT sing 838 n n 
C3' C4' LMT sing 839 n n 
C3' O3' LMT sing 840 n n 
C3' H3' LMT sing 841 n n 
C4' C5' LMT sing 842 n n 
C4' H4' LMT sing 843 n n 
C5' C6' LMT sing 844 n n 
C5' O5' LMT sing 845 n n 
C5' H5' LMT sing 846 n n 
C6' O6' LMT sing 847 n n 
C6' H6D LMT sing 848 n n 
C6' H6E LMT sing 849 n n 
O1' C1 LMT sing 850 n n 
O2' H2O2 LMT sing 851 n n 
O3' H3O2 LMT sing 852 n n 
O6' H6' LMT sing 853 n n 
C1 C2 LMT sing 854 n n 
C1 H12 LMT sing 855 n n 
C1 H11 LMT sing 856 n n 
C2 C3 LMT sing 857 n n 
C2 H22 LMT sing 858 n n 
C2 H21 LMT sing 859 n n 
C3 C4 LMT sing 860 n n 
C3 H32 LMT sing 861 n n 
C3 H31 LMT sing 862 n n 
C4 C5 LMT sing 863 n n 
C4 H42 LMT sing 864 n n 
C4 H41 LMT sing 865 n n 
C5 C6 LMT sing 866 n n 
C5 H52 LMT sing 867 n n 
C5 H51 LMT sing 868 n n 
C6 C7 LMT sing 869 n n 
C6 H62 LMT sing 870 n n 
C6 H61 LMT sing 871 n n 
C7 C8 LMT sing 872 n n 
C7 H72 LMT sing 873 n n 
C7 H71 LMT sing 874 n n 
C8 C9 LMT sing 875 n n 
C8 H82 LMT sing 876 n n 
C8 H81 LMT sing 877 n n 
C9 C10 LMT sing 878 n n 
C9 H92 LMT sing 879 n n 
C9 H91 LMT sing 880 n n 
C10 C11 LMT sing 881 n n 
C10 H102 LMT sing 882 n n 
C10 H101 LMT sing 883 n n 
C11 C12 LMT sing 884 n n 
C11 H112 LMT sing 885 n n 
C11 H111 LMT sing 886 n n 
C12 H123 LMT sing 887 n n 
C12 H122 LMT sing 888 n n 
C12 H121 LMT sing 889 n n 
#
_atom_sites.entry_id                     7VY3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Z 7 BCL L 1 301 301 BCL BCL . 
AA 8 BPH L 1 302 302 BPH BPH . 
BA 9 U10 L 1 303 310 U10 U10 . 
CA 9 U10 L 1 304 311 U10 U10 . 
DA 10 PGV L 1 305 316 PGV PGV . 
EA 11 LDA L 1 306 317 LDA LDA . 
FA 12 LMT L 1 307 319 LMT LMT . 
GA 12 LMT L 1 308 320 LMT LMT . 
HA 7 BCL L 1 309 402 BCL BCL . 
IA 7 BCL M 1 401 401 BCL BCL . 
JA 7 BCL M 1 402 403 BCL BCL . 
KA 8 BPH M 1 403 404 BPH BPH . 
LA 13 FE M 1 404 410 FE FE . 
MA 14 SPO M 1 405 412 SPO SPO . 
NA 12 LMT M 1 406 413 LMT LMT . 
OA 12 LMT M 1 407 415 LMT LMT . 
PA 15 CDL M 1 408 419 CDL CDL . 
QA 10 PGV M 1 409 421 PGV PGV . 
RA 9 U10 M 1 410 501 U10 U10 . 
SA 10 PGV H 1 301 315 PGV PGV . 
TA 11 LDA H 1 302 318 LDA LDA . 
UA 12 LMT H 1 303 417 LMT LMT . 
VA 12 LMT H 1 304 301 LMT LMT . 
WA 12 LMT H 1 305 303 LMT LMT . 
XA 16 PTY H 1 306 400 PTY PTY . 
YA 15 CDL H 1 307 401 CDL CDL . 
ZA 12 LMT A 1 101 312 LMT LMT . 
AB 12 LMT A 1 102 313 LMT LMT . 
BB 7 BCL A 1 103 101 BCL BCL . 
CB 14 SPO B 1 101 110 SPO SPO . 
DB 12 LMT B 1 102 201 LMT LMT . 
EB 7 BCL B 1 103 101 BCL BCL . 
FB 14 SPO B 1 104 111 SPO SPO . 
GB 7 BCL D 1 101 101 BCL BCL . 
HB 14 SPO D 1 102 110 SPO SPO . 
IB 12 LMT D 1 103 201 LMT LMT . 
JB 14 SPO D 1 104 110 SPO SPO . 
KB 9 U10 D 1 105 106 U10 U10 . 
LB 7 BCL E 1 101 101 BCL BCL . 
MB 7 BCL F 1 101 101 BCL BCL . 
NB 10 PGV F 1 102 105 PGV PGV . 
OB 10 PGV F 1 103 106 PGV PGV . 
PB 16 PTY F 1 104 107 PTY PTY . 
QB 14 SPO F 1 105 111 SPO SPO . 
RB 12 LMT F 1 106 201 LMT LMT . 
SB 7 BCL G 1 101 101 BCL BCL . 
TB 14 SPO G 1 102 110 SPO SPO . 
UB 14 SPO G 1 103 111 SPO SPO . 
VB 12 LMT I 1 101 314 LMT LMT . 
WB 7 BCL I 1 102 101 BCL BCL . 
XB 12 LMT I 1 103 201 LMT LMT . 
YB 7 BCL J 1 101 101 BCL BCL . 
ZB 14 SPO J 1 102 111 SPO SPO . 
AC 12 LMT K 1 101 302 LMT LMT . 
BC 7 BCL K 1 102 101 BCL BCL . 
CC 14 SPO K 1 103 110 SPO SPO . 
DC 10 PGV K 1 104 201 PGV PGV . 
EC 14 SPO K 1 105 110 SPO SPO . 
FC 7 BCL N 1 101 101 BCL BCL . 
GC 7 BCL O 1 101 101 BCL BCL . 
HC 14 SPO O 1 102 111 SPO SPO . 
IC 7 BCL P 1 101 101 BCL BCL . 
JC 14 SPO P 1 102 111 SPO SPO . 
KC 12 LMT Q 1 101 414 LMT LMT . 
LC 12 LMT Q 1 102 416 LMT LMT . 
MC 10 PGV Q 1 103 422 PGV PGV . 
NC 7 BCL Q 1 104 101 BCL BCL . 
OC 14 SPO Q 1 105 110 SPO SPO . 
PC 7 BCL Q 1 106 101 BCL BCL . 
QC 7 BCL S 1 101 101 BCL BCL . 
RC 14 SPO S 1 102 110 SPO SPO . 
SC 14 SPO S 1 103 111 SPO SPO . 
TC 7 BCL T 1 101 101 BCL BCL . 
UC 7 BCL V 1 101 101 BCL BCL . 
VC 14 SPO V 1 102 110 SPO SPO . 
WC 14 SPO V 1 103 111 SPO SPO . 
XC 7 BCL W 1 101 101 BCL BCL . 
YC 11 LDA Y 1 101 418 LDA LDA . 
ZC 15 CDL Y 1 102 420 CDL CDL . 
AD 7 BCL Y 1 103 101 BCL BCL . 
BD 10 PGV Y 1 104 201 PGV PGV . 
CD 14 SPO Z 1 101 110 SPO SPO . 
DD 7 BCL Z 1 102 101 BCL BCL . 
ED 7 BCL 1 1 101 101 BCL BCL . 
FD 11 LDA X 1 101 102 LDA LDA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . NA 12 153.33 154 118.378 1 32.77 ? C1B LMT 406 M 1 
HETATM 2 C C2B LMT . . . NA 12 153.1 155.445 117.955 1 32.77 ? C2B LMT 406 M 1 
HETATM 3 O O1B LMT . . . NA 12 153.492 153.945 119.793 1 32.77 ? O1B LMT 406 M 1 
HETATM 4 O O5B LMT . . . NA 12 152.219 153.193 117.992 1 32.77 ? O5B LMT 406 M 1 
HETATM 5 C C1' LMT . . . NA 12 156.207 152.29 122.418 1 32.77 ? C1' LMT 406 M 1 
HETATM 6 C C2' LMT . . . NA 12 156.821 152.991 121.217 1 32.77 ? C2' LMT 406 M 1 
HETATM 7 C C3' LMT . . . NA 12 155.792 153.813 120.453 1 32.77 ? C3' LMT 406 M 1 
HETATM 8 C C4' LMT . . . NA 12 154.51 153.032 120.195 1 32.77 ? C4' LMT 406 M 1 
HETATM 9 C C5' LMT . . . NA 12 154.045 152.306 121.452 1 32.77 ? C5' LMT 406 M 1 
HETATM 10 C C6' LMT . . . NA 12 152.872 151.395 121.131 1 32.77 ? C6' LMT 406 M 1 
HETATM 11 O O1' LMT . . . NA 12 157.18 151.436 123.014 1 32.77 ? O1' LMT 406 M 1 
HETATM 12 O O2' LMT . . . NA 12 157.847 153.875 121.67 1 32.77 ? O2' LMT 406 M 1 
HETATM 13 O O3' LMT . . . NA 12 156.37 154.22 119.207 1 32.77 ? O3' LMT 406 M 1 
HETATM 14 O O5' LMT . . . NA 12 155.098 151.51 121.988 1 32.77 ? O5' LMT 406 M 1 
HETATM 15 O O6' LMT . . . NA 12 153.335 150.326 120.298 1 32.77 ? O6' LMT 406 M 1 
HETATM 16 C C1 LMT . . . NA 12 156.735 150.897 124.256 1 32.77 ? C1 LMT 406 M 1 
HETATM 17 C C2 LMT . . . NA 12 157.818 149.996 124.842 1 32.77 ? C2 LMT 406 M 1 
HETATM 18 C C3 LMT . . . NA 12 158.201 150.417 126.255 1 32.77 ? C3 LMT 406 M 1 
HETATM 19 C C4 LMT . . . NA 12 158.006 149.273 127.244 1 32.77 ? C4 LMT 406 M 1 
HETATM 20 C C5 LMT . . . NA 12 158.082 149.757 128.687 1 32.77 ? C5 LMT 406 M 1 
HETATM 21 C C6 LMT . . . NA 12 157.79 148.62 129.659 1 32.77 ? C6 LMT 406 M 1 
HETATM 22 C C7 LMT . . . NA 12 157.722 149.122 131.096 1 32.77 ? C7 LMT 406 M 1 
HETATM 23 C C8 LMT . . . NA 12 157.251 148.026 132.043 1 32.77 ? C8 LMT 406 M 1 
HETATM 24 C C9 LMT . . . NA 12 157.474 148.433 133.495 1 32.77 ? C9 LMT 406 M 1 
HETATM 25 C C10 LMT . . . NA 12 157.021 147.349 134.467 1 32.77 ? C10 LMT 406 M 1 
HETATM 26 C C11 LMT . . . NA 12 157.802 146.057 134.258 1 32.77 ? C11 LMT 406 M 1 
HETATM 27 C C12 LMT . . . NA 12 157.44 145.021 135.302 1 32.77 ? C12 LMT 406 M 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#