data_7VY6 # _model_server_result.job_id Wcf5yH1MDovRCo_NaIeZVA _model_server_result.datetime_utc '2024-11-14 14:48:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 7VY6 # _exptl.entry_id 7VY6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 256.424 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 300-meric 300 'complete icosahedral assembly' 1 ? pentameric 5 'icosahedral asymmetric unit' 2 ? 25-meric 25 'icosahedral pentamer' 3 ? 30-meric 30 'icosahedral 23 hexamer' 4 ? pentameric 5 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 (1-60) A,B,C,D,E,F 2 1 A,B,C,D,E,F 3 (1-5) A,B,C,D,E,F 4 (1,2,6,10,23,24) A,B,C,D,E,F 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.000269 -0.000306 1 1 0.000106 -0.000269 -0.000106 1 0.000306 0.03084 0.00532 -0.00517 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.499934 0.308871 0.809113 0.309097 0.809083 -0.499844 -0.809027 0.499984 0.309017 0.02069 -0.01278 -0.02821 3 'point symmetry operation' ? ? -0.309189 0.808861 0.500145 0.809001 0.500172 -0.308782 -0.49992 0.309146 -0.809017 0.00426 -0.00262 -0.06005 4 'point symmetry operation' ? ? -0.309189 0.809001 -0.49992 0.808861 0.500172 0.309146 0.500145 -0.308782 -0.809017 -0.02658 0.01643 -0.05152 5 'point symmetry operation' ? ? 0.499934 0.309097 -0.809027 0.308871 0.809083 0.499984 0.809113 -0.499844 0.309017 -0.02921 0.01805 -0.01441 6 'point symmetry operation' ? ? -1 -0.000212 0 -0.000212 1 0.000612 0 0.000612 -1 -0.01066 0.00002 -0.06168 7 'point symmetry operation' ? ? -0.5 -0.309043 -0.809007 0.308496 0.809323 -0.499827 0.809216 -0.499489 -0.309323 -0.03134 -0.01278 -0.03348 8 'point symmetry operation' ? ? 0.309017 -0.808968 -0.50008 0.80876 0.500189 -0.309382 0.500415 -0.30884 0.808828 -0.01491 -0.00264 -0.00163 9 'point symmetry operation' ? ? 0.309017 -0.809107 0.499855 0.809233 0.499811 0.308758 -0.499651 0.309087 0.809206 0.01592 0.01642 -0.01015 10 'point symmetry operation' ? ? -0.5 -0.309269 0.808921 0.30926 0.808711 0.500344 -0.808924 0.500339 -0.308711 0.01855 0.01807 -0.04726 11 'point symmetry operation' ? ? 1 0.000213 -0.000539 0.000213 -1 0 -0.000539 0 -1 -0.00002 0.01036 -0.06168 12 'point symmetry operation' ? ? 0.500436 0.308774 0.80884 -0.308991 -0.809017 0.500016 0.808758 -0.50015 -0.309453 0.02068 0.02314 -0.03348 13 'point symmetry operation' ? ? -0.308747 0.808801 0.500516 -0.809066 -0.5 0.308888 0.500087 -0.309582 0.808747 0.00427 0.01298 -0.00163 14 'point symmetry operation' ? ? -0.309286 0.809273 -0.499418 -0.808927 -0.5 -0.309252 -0.499979 0.308346 0.809286 -0.02657 -0.00608 -0.01014 15 'point symmetry operation' ? ? 0.499564 0.309538 -0.809087 -0.308765 -0.809017 -0.500156 -0.809382 0.499678 -0.308581 -0.02922 -0.0077 -0.04725 16 'point symmetry operation' ? ? -1 0 0.000539 0 -1 -0.000612 0.000539 -0.000612 1 -0.01064 0.01034 0 17 'point symmetry operation' ? ? -0.50037 -0.308602 -0.808946 -0.308602 -0.809388 0.499655 -0.808946 0.499655 0.309759 -0.03134 0.02313 -0.02818 18 'point symmetry operation' ? ? 0.308919 -0.808695 -0.500581 -0.808695 -0.500361 0.309276 -0.500581 0.309276 -0.808558 -0.01493 0.013 -0.06004 19 'point symmetry operation' ? ? 0.309458 -0.809167 0.499484 -0.809167 -0.499983 -0.308651 0.499484 -0.308651 -0.809475 0.01591 -0.00606 -0.05154 20 'point symmetry operation' ? ? -0.499498 -0.309366 0.809193 -0.309366 -0.808777 -0.500172 0.809193 -0.500172 0.308275 0.01856 -0.0077 -0.01443 21 'point symmetry operation' ? ? 0.000163 -0.000036 1 1 -0.0002 -0.000163 0.0002 1 0.000036 0.02551 0.0105 -0.03601 22 'point symmetry operation' ? ? -0.808957 0.500005 0.309167 0.500005 0.308628 0.809162 0.309167 0.809162 -0.499672 -0.0027 0.0312 -0.04879 23 'point symmetry operation' ? ? -0.5 0.30926 -0.808924 -0.309269 0.808711 0.500339 0.808921 0.500344 -0.308711 -0.03454 0.01477 -0.03864 24 'point symmetry operation' ? ? 0.500066 -0.308668 -0.80911 -0.309432 0.808951 -0.49985 0.808818 0.500322 0.309017 -0.02602 -0.01607 -0.01959 25 'point symmetry operation' ? ? 0.809184 -0.499823 0.308867 0.499741 0.309017 -0.809177 0.309001 0.809126 0.499834 0.0111 -0.01871 -0.01797 26 'point symmetry operation' ? ? -0.000163 0.000575 -1 -1 -0.000412 0.000163 -0.000412 1 0.000575 -0.03617 -0.00014 -0.036 27 'point symmetry operation' ? ? 0.809123 -0.499569 -0.309437 -0.500194 -0.309123 -0.808857 0.308425 0.809243 -0.5 -0.00797 -0.02083 -0.0488 28 'point symmetry operation' ? ? 0.500436 -0.308991 0.808758 0.308774 -0.809017 -0.50015 0.80884 0.500016 -0.309453 0.02388 -0.00441 -0.03866 29 'point symmetry operation' ? ? -0.49963 0.308937 0.809276 0.308937 -0.809257 0.499661 0.809276 0.499661 0.308887 0.01536 0.02642 -0.01959 30 'point symmetry operation' ? ? -0.809017 0.500259 -0.308597 -0.49993 -0.309512 0.808871 0.309131 0.808668 0.500495 -0.02175 0.02906 -0.01794 31 'point symmetry operation' ? ? -0.000376 0.000036 -1 1 0.000412 -0.000376 0.000412 -1 -0.000036 -0.03617 0.01049 -0.02566 32 'point symmetry operation' ? ? 0.80885 -0.50007 -0.309339 0.500366 0.309017 0.808791 -0.308861 -0.808974 0.500167 -0.00797 0.03119 -0.01287 33 'point symmetry operation' ? ? 0.500066 -0.309432 0.808818 -0.308668 0.808951 0.500322 -0.80911 -0.49985 0.309017 0.02388 0.01477 -0.02303 34 'point symmetry operation' ? ? -0.5 0.308496 0.809216 -0.309043 0.809323 -0.499489 -0.809007 -0.499827 -0.309323 0.01536 -0.01606 -0.0421 35 'point symmetry operation' ? ? -0.80929 0.499758 -0.308695 0.499758 0.309618 -0.808937 -0.308695 -0.808937 -0.500328 -0.02175 -0.01871 -0.04372 36 'point symmetry operation' ? ? 0.000376 -0.000575 1 -1 0.000199 0.000376 -0.0002 -1 -0.000575 0.02551 -0.00014 -0.02568 37 'point symmetry operation' ? ? -0.809017 0.499634 0.309608 -0.500177 -0.308522 -0.809097 -0.308731 -0.809432 0.499505 -0.00268 -0.02084 -0.01289 38 'point symmetry operation' ? ? -0.500502 0.309162 -0.808651 0.309162 -0.808645 -0.500511 -0.808651 -0.500511 0.309147 -0.03453 -0.00442 -0.02302 39 'point symmetry operation' ? ? 0.499564 -0.308765 -0.809382 0.309538 -0.809017 0.499678 -0.809087 -0.500156 -0.308581 -0.02603 0.02643 -0.04207 40 'point symmetry operation' ? ? 0.809123 -0.500194 0.308425 -0.499569 -0.309123 0.809243 -0.309437 -0.808857 -0.5 0.01108 0.02907 -0.04372 41 'point symmetry operation' ? ? 0.000163 1 0.0002 -0.000036 -0.0002 1 1 -0.000163 0.000036 -0.0105 0.03602 -0.02551 42 'point symmetry operation' ? ? 0.309017 0.809233 -0.499651 -0.809107 0.499811 0.309087 0.499855 0.308758 0.809206 -0.02328 0.00781 -0.00482 43 'point symmetry operation' ? ? 0.80885 0.500366 -0.308861 -0.50007 0.309017 -0.808974 -0.309339 0.808791 0.500167 -0.01313 -0.02403 -0.02125 44 'point symmetry operation' ? ? 0.808911 0.500242 0.308903 0.499995 -0.308911 -0.80906 -0.309303 0.808908 -0.5 0.00592 -0.01551 -0.05209 45 'point symmetry operation' ? ? 0.309115 0.809033 0.499913 0.809033 -0.500017 0.308947 0.499913 0.308947 -0.809097 0.00754 0.02161 -0.05472 46 'point symmetry operation' ? ? -0.000376 1 0.000412 0.000036 0.000412 -1 -1 -0.000376 -0.000036 -0.0105 -0.02566 -0.03617 47 'point symmetry operation' ? ? 0.308576 0.809173 -0.500021 0.809173 -0.499639 -0.309194 -0.500021 -0.309194 -0.808937 -0.02329 0.00254 -0.05685 48 'point symmetry operation' ? ? 0.808911 0.499995 -0.309303 0.500242 -0.308911 0.808908 0.308903 -0.80906 -0.5 -0.01315 0.03439 -0.04042 49 'point symmetry operation' ? ? 0.809184 0.499741 0.309001 -0.499823 0.309017 0.809126 0.308867 -0.809177 0.499833 0.00592 0.02587 -0.00959 50 'point symmetry operation' ? ? 0.309017 0.80876 0.500415 -0.808968 0.500189 -0.30884 -0.50008 -0.309382 0.808828 0.00756 -0.01125 -0.00696 51 'point symmetry operation' ? ? 0.000376 -1 -0.0002 -0.000575 0.000199 -1 1 0.000376 -0.000575 -0.00015 -0.02566 -0.02553 52 'point symmetry operation' ? ? -0.308747 -0.809066 0.500087 0.808801 -0.5 -0.309582 0.500516 0.308888 0.808747 0.01264 0.00253 -0.00483 53 'point symmetry operation' ? ? -0.809017 -0.49993 0.309131 0.500259 -0.309512 0.808668 -0.308597 0.808871 0.500495 0.00248 0.03438 -0.02124 54 'point symmetry operation' ? ? -0.809077 -0.499806 -0.309172 -0.499806 0.308416 0.809366 -0.309172 0.809366 -0.499339 -0.01659 0.02588 -0.05207 55 'point symmetry operation' ? ? -0.308845 -0.808867 -0.500349 -0.809339 0.499828 -0.308452 0.499585 0.309688 -0.809017 -0.01821 -0.01123 -0.05473 56 'point symmetry operation' ? ? -0.000163 -1 -0.000412 0.000575 -0.000412 1 -1 0.000163 0.000575 -0.00016 0.03602 -0.03615 57 'point symmetry operation' ? ? -0.308845 -0.809339 0.499585 -0.808867 0.499828 0.309688 -0.500349 -0.308452 -0.809017 0.01262 0.00783 -0.05685 58 'point symmetry operation' ? ? -0.808744 -0.500431 0.309033 -0.500431 0.309405 -0.808602 0.309033 -0.808602 -0.500661 0.00248 -0.02403 -0.04044 59 'point symmetry operation' ? ? -0.809017 -0.500177 -0.308731 0.499634 -0.308522 -0.809432 0.309608 -0.809097 0.499505 -0.01657 -0.01552 -0.00959 60 'point symmetry operation' ? ? -0.309286 -0.808927 -0.499979 0.809273 -0.5 0.308346 -0.499418 -0.309252 0.809286 -0.01821 0.02159 -0.00694 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 64 E CYS 66 1_555 E SG CYS 111 E CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 E SG CYS 95 E CYS 97 1_555 E SG CYS 124 E CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 E SG CYS 129 E CYS 131 1_555 E SG CYS 170 E CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 E SG CYS 156 E CYS 158 1_555 E SG CYS 186 E CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 258 n n C1 O2 PLM doub 259 n n C1 C2 PLM sing 260 n n O1 H PLM sing 261 n n C2 C3 PLM sing 262 n n C2 H21 PLM sing 263 n n C2 H22 PLM sing 264 n n C3 C4 PLM sing 265 n n C3 H31 PLM sing 266 n n C3 H32 PLM sing 267 n n C4 C5 PLM sing 268 n n C4 H41 PLM sing 269 n n C4 H42 PLM sing 270 n n C5 C6 PLM sing 271 n n C5 H51 PLM sing 272 n n C5 H52 PLM sing 273 n n C6 C7 PLM sing 274 n n C6 H61 PLM sing 275 n n C6 H62 PLM sing 276 n n C7 C8 PLM sing 277 n n C7 H71 PLM sing 278 n n C7 H72 PLM sing 279 n n C8 C9 PLM sing 280 n n C8 H81 PLM sing 281 n n C8 H82 PLM sing 282 n n C9 CA PLM sing 283 n n C9 H91 PLM sing 284 n n C9 H92 PLM sing 285 n n CA CB PLM sing 286 n n CA HA1 PLM sing 287 n n CA HA2 PLM sing 288 n n CB CC PLM sing 289 n n CB HB1 PLM sing 290 n n CB HB2 PLM sing 291 n n CC CD PLM sing 292 n n CC HC1 PLM sing 293 n n CC HC2 PLM sing 294 n n CD CE PLM sing 295 n n CD HD1 PLM sing 296 n n CD HD2 PLM sing 297 n n CE CF PLM sing 298 n n CE HE1 PLM sing 299 n n CE HE2 PLM sing 300 n n CF CG PLM sing 301 n n CF HF1 PLM sing 302 n n CF HF2 PLM sing 303 n n CG HG1 PLM sing 304 n n CG HG2 PLM sing 305 n n CG HG3 PLM sing 306 n n # _atom_sites.entry_id 7VY6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id PLM _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 282 _pdbx_nonpoly_scheme.pdb_mon_id PLM _pdbx_nonpoly_scheme.auth_mon_id PLM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . F 6 53.116 117.25 32.634 1 27.34 ? C1 PLM 301 A 1 HETATM 2 O O1 PLM . . . F 6 52.109 117.622 31.998 1 27.34 ? O1 PLM 301 A 1 HETATM 3 O O2 PLM . . . F 6 53.091 116.932 33.84 1 27.34 ? O2 PLM 301 A 1 HETATM 4 C C2 PLM . . . F 6 54.446 117.185 31.903 1 27.34 ? C2 PLM 301 A 1 HETATM 5 C C3 PLM . . . F 6 54.414 116.411 30.625 1 27.34 ? C3 PLM 301 A 1 HETATM 6 C C4 PLM . . . F 6 55.802 116.051 30.126 1 27.34 ? C4 PLM 301 A 1 HETATM 7 C C5 PLM . . . F 6 55.799 115.194 28.888 1 27.34 ? C5 PLM 301 A 1 HETATM 8 C C6 PLM . . . F 6 57.048 114.372 28.697 1 27.34 ? C6 PLM 301 A 1 HETATM 9 C C7 PLM . . . F 6 58.284 115.16 28.349 1 27.34 ? C7 PLM 301 A 1 HETATM 10 C C8 PLM . . . F 6 59.497 114.298 28.111 1 27.34 ? C8 PLM 301 A 1 HETATM 11 C C9 PLM . . . F 6 60.646 115.001 27.435 1 27.34 ? C9 PLM 301 A 1 HETATM 12 C CA PLM . . . F 6 61.764 114.078 27.022 1 27.34 ? CA PLM 301 A 1 HETATM 13 C CB PLM . . . F 6 62.807 114.71 26.137 1 27.34 ? CB PLM 301 A 1 HETATM 14 C CC PLM . . . F 6 63.808 113.732 25.577 1 27.34 ? CC PLM 301 A 1 HETATM 15 C CD PLM . . . F 6 64.792 114.336 24.609 1 27.34 ? CD PLM 301 A 1 HETATM 16 C CE PLM . . . F 6 65.742 113.343 23.988 1 27.34 ? CE PLM 301 A 1 HETATM 17 C CF PLM . . . F 6 66.718 113.954 23.019 1 27.34 ? CF PLM 301 A 1 HETATM 18 C CG PLM . . . F 6 67.609 112.944 22.343 1 27.34 ? CG PLM 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 18 #