data_7VY9
#
_model_server_result.job_id            kIpvA6t2WX8Vkj5snatzyg 
_model_server_result.datetime_utc      '2024-12-21 16:18:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":101}' 
#
_entry.id    7VY9 
#
_exptl.entry_id    7VY9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          30 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 30 DA N N 
? 30 GA N N 
? 30 MA N N 
? 30 QA N N 
? 30 TA N N 
? 30 UA N N 
? 30 WA N N 
? 30 ZA N N 
? 30 BB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
_atom_sites.entry_id                     7VY9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE Q 1 101 718 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 31 CDL V 1 202 203 CDL CDL . 
GA 30 PEE W 1 201 202 PEE PEE . 
HA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
IA 31 CDL a 1 201 201 CDL CDL . 
JA 33 PLX a 1 202 101 PLX PLX . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 30 PEE j 1 201 101 PEE PEE . 
NA 33 PLX j 1 202 202 PLX PLX . 
OA 33 PLX j 1 203 203 PLX PLX . 
PA 31 CDL k 1 101 101 CDL CDL . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 712 CDL CDL . 
SA 31 CDL l 1 703 713 CDL CDL . 
TA 30 PEE l 1 704 719 PEE PEE . 
UA 30 PEE l 1 705 720 PEE PEE . 
VA 31 CDL n 1 101 102 CDL CDL . 
WA 30 PEE r 1 501 202 PEE PEE . 
XA 33 PLX r 1 502 205 PLX PLX . 
YA 33 PLX r 1 503 201 PLX PLX . 
ZA 30 PEE s 1 401 201 PEE PEE . 
AB 31 CDL s 1 402 201 CDL CDL . 
BB 30 PEE s 1 403 401 PEE PEE . 
CB 34 UQ s 1 404 402 UQ UQ . 
DB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 PEE . . . DA 30 177.757 171.644 119.255 1 43.65 ? C27 PEE 101 Q 1 
HETATM 2 C C26 PEE . . . DA 30 178.628 171.609 120.511 1 47.19 ? C26 PEE 101 Q 1 
HETATM 3 C C25 PEE . . . DA 30 179.419 170.313 120.631 1 44.22 ? C25 PEE 101 Q 1 
HETATM 4 C C24 PEE . . . DA 30 178.697 169.266 121.477 1 40.56 ? C24 PEE 101 Q 1 
HETATM 5 C C23 PEE . . . DA 30 179.662 168.523 122.399 1 42.15 ? C23 PEE 101 Q 1 
HETATM 6 C C22 PEE . . . DA 30 180.345 169.466 123.387 1 42.52 ? C22 PEE 101 Q 1 
HETATM 7 C C21 PEE . . . DA 30 181.821 169.117 123.599 1 41.83 ? C21 PEE 101 Q 1 
HETATM 8 C C20 PEE . . . DA 30 182.652 170.333 124.01 1 40.24 ? C20 PEE 101 Q 1 
HETATM 9 C C19 PEE . . . DA 30 183.516 170.049 125.237 1 34.48 ? C19 PEE 101 Q 1 
HETATM 10 C C18 PEE . . . DA 30 182.686 169.546 126.417 1 34.87 ? C18 PEE 101 Q 1 
HETATM 11 C C17 PEE . . . DA 30 183.561 169.13 127.599 1 36.39 ? C17 PEE 101 Q 1 
HETATM 12 C C16 PEE . . . DA 30 182.737 168.513 128.727 1 40 ? C16 PEE 101 Q 1 
HETATM 13 C C15 PEE . . . DA 30 183.61 167.77 129.738 1 38.11 ? C15 PEE 101 Q 1 
HETATM 14 C C14 PEE . . . DA 30 183.173 168.046 131.179 1 39.82 ? C14 PEE 101 Q 1 
HETATM 15 C C13 PEE . . . DA 30 183.867 167.119 132.181 1 42.61 ? C13 PEE 101 Q 1 
HETATM 16 C C12 PEE . . . DA 30 183.57 167.509 133.635 1 38.01 ? C12 PEE 101 Q 1 
HETATM 17 C C11 PEE . . . DA 30 182.118 167.957 133.83 1 37.25 ? C11 PEE 101 Q 1 
HETATM 18 C C10 PEE . . . DA 30 181.63 167.73 135.266 1 45.45 ? C10 PEE 101 Q 1 
HETATM 19 O O4 PEE . . . DA 30 182.41 167.599 136.146 1 42.57 ? O4 PEE 101 Q 1 
HETATM 20 O O2 PEE . . . DA 30 180.255 167.671 135.528 1 46.9 ? O2 PEE 101 Q 1 
HETATM 21 C C2 PEE . . . DA 30 179.691 166.424 135.23 1 42.81 ? C2 PEE 101 Q 1 
HETATM 22 C C1 PEE . . . DA 30 179.223 165.759 136.523 1 40.07 ? C1 PEE 101 Q 1 
HETATM 23 O O3P PEE . . . DA 30 180.346 165.237 137.184 1 43.97 ? O3P PEE 101 Q 1 
HETATM 24 P P PEE . . . DA 30 180.382 163.62 137.528 1 69.3 ? P PEE 101 Q 1 
HETATM 25 O O2P PEE . . . DA 30 179.413 162.89 136.629 1 46.27 ? O2P PEE 101 Q 1 
HETATM 26 O O1P PEE . . . DA 30 181.776 163.086 137.301 1 48.73 ? O1P PEE 101 Q 1 
HETATM 27 O O4P PEE . . . DA 30 179.953 163.39 139.107 1 49.69 ? O4P PEE 101 Q 1 
HETATM 28 C C4 PEE . . . DA 30 180.968 163.345 140.079 1 43.03 ? C4 PEE 101 Q 1 
HETATM 29 C C5 PEE . . . DA 30 180.465 164.065 141.331 1 42.74 ? C5 PEE 101 Q 1 
HETATM 30 N N PEE . . . DA 30 179.467 163.26 142.01 1 44.6 ? N PEE 101 Q 1 
HETATM 31 C C3 PEE . . . DA 30 178.508 166.613 134.285 1 37.04 ? C3 PEE 101 Q 1 
HETATM 32 O O3 PEE . . . DA 30 178.093 165.35 133.847 1 42.17 ? O3 PEE 101 Q 1 
HETATM 33 C C30 PEE . . . DA 30 177.864 165.267 132.469 1 41.7 ? C30 PEE 101 Q 1 
HETATM 34 O O5 PEE . . . DA 30 176.795 164.954 132.067 1 44.16 ? O5 PEE 101 Q 1 
HETATM 35 C C31 PEE . . . DA 30 178.987 165.567 131.476 1 37.3 ? C31 PEE 101 Q 1 
HETATM 36 C C32 PEE . . . DA 30 178.63 165.109 130.062 1 32.64 ? C32 PEE 101 Q 1 
HETATM 37 C C33 PEE . . . DA 30 179.735 165.427 129.051 1 38.84 ? C33 PEE 101 Q 1 
HETATM 38 C C34 PEE . . . DA 30 179.403 164.895 127.655 1 36.73 ? C34 PEE 101 Q 1 
HETATM 39 C C35 PEE . . . DA 30 180.357 165.44 126.588 1 36.85 ? C35 PEE 101 Q 1 
HETATM 40 C C36 PEE . . . DA 30 179.905 165.084 125.17 1 38.84 ? C36 PEE 101 Q 1 
HETATM 41 C C37 PEE . . . DA 30 178.705 165.919 124.721 1 44.02 ? C37 PEE 101 Q 1 
HETATM 42 C C38 PEE . . . DA 30 177.532 165.057 124.257 1 33.27 ? C38 PEE 101 Q 1 
HETATM 43 C C39 PEE . . . DA 30 176.507 165.852 123.457 1 31.12 ? C39 PEE 101 Q 1 
HETATM 44 C C40 PEE . . . DA 30 175.139 165.178 123.452 1 41.01 ? C40 PEE 101 Q 1 
HETATM 45 C C41 PEE . . . DA 30 174.268 165.635 122.289 1 37.1 ? C41 PEE 101 Q 1 
HETATM 46 C C42 PEE . . . DA 30 172.796 165.314 122.515 1 42.7 ? C42 PEE 101 Q 1 
HETATM 47 C C43 PEE . . . DA 30 171.971 165.441 121.238 1 43.37 ? C43 PEE 101 Q 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           47 
#