data_7VY9 # _model_server_result.job_id o2D5ubcc40SCBANaEvSRJA _model_server_result.datetime_utc '2024-12-21 16:11:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PA","auth_seq_id":101}' # _entry.id 7VY9 # _exptl.entry_id 7VY9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 EA N N ? 31 FA N N ? 31 IA N N ? 31 LA N N ? 31 PA N N ? 31 RA N N ? 31 SA N N ? 31 VA N N ? 31 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VY9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 31 CDL V 1 202 203 CDL CDL . GA 30 PEE W 1 201 202 PEE PEE . HA 32 8Q1 X 1 201 201 8Q1 8Q1 . IA 31 CDL a 1 201 201 CDL CDL . JA 33 PLX a 1 202 101 PLX PLX . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 30 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 CDL k 1 101 101 CDL CDL . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 712 CDL CDL . SA 31 CDL l 1 703 713 CDL CDL . TA 30 PEE l 1 704 719 PEE PEE . UA 30 PEE l 1 705 720 PEE PEE . VA 31 CDL n 1 101 102 CDL CDL . WA 30 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 205 PLX PLX . YA 33 PLX r 1 503 201 PLX PLX . ZA 30 PEE s 1 401 201 PEE PEE . AB 31 CDL s 1 402 201 CDL CDL . BB 30 PEE s 1 403 401 PEE PEE . CB 34 UQ s 1 404 402 UQ UQ . DB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . PA 31 143.599 156.484 140.043 1 54.65 ? C1 CDL 101 k 1 HETATM 2 O O1 CDL . . . PA 31 143.239 156.246 138.715 1 54.79 ? O1 CDL 101 k 1 HETATM 3 C CA2 CDL . . . PA 31 144.979 157.189 140.054 1 54.16 ? CA2 CDL 101 k 1 HETATM 4 O OA2 CDL . . . PA 31 145.236 157.625 141.38 1 61.27 ? OA2 CDL 101 k 1 HETATM 5 P PA1 CDL . . . PA 31 145.415 159.253 141.638 1 79.44 ? PA1 CDL 101 k 1 HETATM 6 O OA3 CDL . . . PA 31 144.056 159.893 141.782 1 60.04 ? OA3 CDL 101 k 1 HETATM 7 O OA4 CDL . . . PA 31 146.212 159.477 142.888 1 58.5 ? OA4 CDL 101 k 1 HETATM 8 O OA5 CDL . . . PA 31 146.205 159.927 140.343 1 62.82 ? OA5 CDL 101 k 1 HETATM 9 C CA3 CDL . . . PA 31 145.916 161.274 140.007 1 55.72 ? CA3 CDL 101 k 1 HETATM 10 C CA4 CDL . . . PA 31 144.955 161.285 138.825 1 57.68 ? CA4 CDL 101 k 1 HETATM 11 O OA6 CDL . . . PA 31 144.797 159.986 138.305 1 57.62 ? OA6 CDL 101 k 1 HETATM 12 C CA5 CDL . . . PA 31 145.741 159.541 137.332 1 57.99 ? CA5 CDL 101 k 1 HETATM 13 O OA7 CDL . . . PA 31 146.915 159.564 137.549 1 60.77 ? OA7 CDL 101 k 1 HETATM 14 C C11 CDL . . . PA 31 145.225 158.997 135.963 1 55.18 ? C11 CDL 101 k 1 HETATM 15 C C12 CDL . . . PA 31 146.063 159.487 134.776 1 52.29 ? C12 CDL 101 k 1 HETATM 16 C C13 CDL . . . PA 31 145.885 158.595 133.551 1 54.25 ? C13 CDL 101 k 1 HETATM 17 C C14 CDL . . . PA 31 144.745 159.085 132.638 1 58.03 ? C14 CDL 101 k 1 HETATM 18 C C15 CDL . . . PA 31 144.222 157.963 131.695 1 57.35 ? C15 CDL 101 k 1 HETATM 19 C C16 CDL . . . PA 31 145.343 157.379 130.8 1 59.93 ? C16 CDL 101 k 1 HETATM 20 C C17 CDL . . . PA 31 144.945 157.356 129.293 1 58 ? C17 CDL 101 k 1 HETATM 21 C C18 CDL . . . PA 31 146.12 157.764 128.37 1 55.01 ? C18 CDL 101 k 1 HETATM 22 C C19 CDL . . . PA 31 146.881 159.01 128.905 1 54.26 ? C19 CDL 101 k 1 HETATM 23 C C20 CDL . . . PA 31 146.062 160.313 128.736 1 54.81 ? C20 CDL 101 k 1 HETATM 24 C C21 CDL . . . PA 31 146.816 161.563 129.264 1 59.71 ? C21 CDL 101 k 1 HETATM 25 C C22 CDL . . . PA 31 145.97 162.858 129.113 1 58.13 ? C22 CDL 101 k 1 HETATM 26 C C23 CDL . . . PA 31 146.809 164.066 128.638 1 53.04 ? C23 CDL 101 k 1 HETATM 27 C C24 CDL . . . PA 31 146.316 164.613 127.274 1 54.19 ? C24 CDL 101 k 1 HETATM 28 C C25 CDL . . . PA 31 146.326 163.531 126.181 1 56.09 ? C25 CDL 101 k 1 HETATM 29 C C26 CDL . . . PA 31 145.863 164.068 124.808 1 54.88 ? C26 CDL 101 k 1 HETATM 30 C C27 CDL . . . PA 31 144.41 164.553 124.836 1 57.53 ? C27 CDL 101 k 1 HETATM 31 C CA6 CDL . . . PA 31 145.475 162.265 137.754 1 55.99 ? CA6 CDL 101 k 1 HETATM 32 O OA8 CDL . . . PA 31 144.511 162.396 136.73 1 59.81 ? OA8 CDL 101 k 1 HETATM 33 C CA7 CDL . . . PA 31 145.005 163.103 135.591 1 58.96 ? CA7 CDL 101 k 1 HETATM 34 O OA9 CDL . . . PA 31 145.949 163.805 135.698 1 57.59 ? OA9 CDL 101 k 1 HETATM 35 C C31 CDL . . . PA 31 144.309 162.957 134.226 1 53.94 ? C31 CDL 101 k 1 HETATM 36 C C32 CDL . . . PA 31 143.942 164.313 133.63 1 52.5 ? C32 CDL 101 k 1 HETATM 37 C C33 CDL . . . PA 31 144.528 164.498 132.224 1 55.48 ? C33 CDL 101 k 1 HETATM 38 C C34 CDL . . . PA 31 143.914 165.712 131.491 1 57.16 ? C34 CDL 101 k 1 HETATM 39 C C35 CDL . . . PA 31 143.401 165.347 130.074 1 54.12 ? C35 CDL 101 k 1 HETATM 40 C C36 CDL . . . PA 31 143.581 166.517 129.08 1 56.05 ? C36 CDL 101 k 1 HETATM 41 C C37 CDL . . . PA 31 142.429 167.532 129.157 1 57.93 ? C37 CDL 101 k 1 HETATM 42 C C38 CDL . . . PA 31 142.445 168.515 127.98 1 59.29 ? C38 CDL 101 k 1 HETATM 43 C C39 CDL . . . PA 31 142.84 167.838 126.653 1 58.84 ? C39 CDL 101 k 1 HETATM 44 C C40 CDL . . . PA 31 141.956 168.304 125.477 1 57.36 ? C40 CDL 101 k 1 HETATM 45 C C41 CDL . . . PA 31 142.189 167.46 124.176 1 57.66 ? C41 CDL 101 k 1 HETATM 46 C C42 CDL . . . PA 31 142.317 168.359 122.916 1 59.56 ? C42 CDL 101 k 1 HETATM 47 C C43 CDL . . . PA 31 141.383 169.603 122.976 1 59.6 ? C43 CDL 101 k 1 HETATM 48 C C44 CDL . . . PA 31 142.057 170.871 122.387 1 56.8 ? C44 CDL 101 k 1 HETATM 49 C C45 CDL . . . PA 31 143.231 171.352 123.238 1 59.47 ? C45 CDL 101 k 1 HETATM 50 C C46 CDL . . . PA 31 142.8 171.777 124.655 1 57.15 ? C46 CDL 101 k 1 HETATM 51 C C47 CDL . . . PA 31 143.722 172.84 125.245 1 53.4 ? C47 CDL 101 k 1 HETATM 52 C CB2 CDL . . . PA 31 143.629 155.111 140.796 1 54.33 ? CB2 CDL 101 k 1 HETATM 53 O OB2 CDL . . . PA 31 142.544 154.326 140.325 1 57.97 ? OB2 CDL 101 k 1 HETATM 54 P PB2 CDL . . . PA 31 142.903 152.908 139.507 1 57.88 ? PB2 CDL 101 k 1 HETATM 55 O OB3 CDL . . . PA 31 144.34 152.514 139.787 1 53.27 ? OB3 CDL 101 k 1 HETATM 56 O OB4 CDL . . . PA 31 141.977 151.813 139.98 1 59.05 ? OB4 CDL 101 k 1 HETATM 57 O OB5 CDL . . . PA 31 142.699 153.152 137.862 1 51.49 ? OB5 CDL 101 k 1 HETATM 58 C CB3 CDL . . . PA 31 143.748 152.783 136.977 1 52.52 ? CB3 CDL 101 k 1 HETATM 59 C CB4 CDL . . . PA 31 143.234 152.95 135.54 1 54.53 ? CB4 CDL 101 k 1 HETATM 60 O OB6 CDL . . . PA 31 142.171 153.871 135.537 1 59.36 ? OB6 CDL 101 k 1 HETATM 61 C CB5 CDL . . . PA 31 142.551 155.199 135.19 1 56.66 ? CB5 CDL 101 k 1 HETATM 62 O OB7 CDL . . . PA 31 143.626 155.409 134.736 1 57.35 ? OB7 CDL 101 k 1 HETATM 63 C C51 CDL . . . PA 31 141.572 156.37 135.414 1 54.16 ? C51 CDL 101 k 1 HETATM 64 C C52 CDL . . . PA 31 140.628 156.616 134.223 1 54.3 ? C52 CDL 101 k 1 HETATM 65 C C53 CDL . . . PA 31 140.247 155.331 133.471 1 54.03 ? C53 CDL 101 k 1 HETATM 66 C C54 CDL . . . PA 31 138.907 155.476 132.718 1 55.92 ? C54 CDL 101 k 1 HETATM 67 C C55 CDL . . . PA 31 139.105 155.798 131.229 1 54.1 ? C55 CDL 101 k 1 HETATM 68 C C56 CDL . . . PA 31 139.736 154.616 130.447 1 56.67 ? C56 CDL 101 k 1 HETATM 69 C C57 CDL . . . PA 31 139.458 154.712 128.933 1 56.41 ? C57 CDL 101 k 1 HETATM 70 C C58 CDL . . . PA 31 140.712 155.142 128.131 1 55.43 ? C58 CDL 101 k 1 HETATM 71 C C59 CDL . . . PA 31 141.033 154.167 126.971 1 54.57 ? C59 CDL 101 k 1 HETATM 72 C C60 CDL . . . PA 31 142.037 154.756 125.961 1 57.54 ? C60 CDL 101 k 1 HETATM 73 C C61 CDL . . . PA 31 141.815 156.274 125.714 1 61.85 ? C61 CDL 101 k 1 HETATM 74 C C62 CDL . . . PA 31 141.035 156.57 124.413 1 58.61 ? C62 CDL 101 k 1 HETATM 75 C C63 CDL . . . PA 31 141.311 155.538 123.309 1 58.41 ? C63 CDL 101 k 1 HETATM 76 C C64 CDL . . . PA 31 140.419 155.744 122.074 1 56.72 ? C64 CDL 101 k 1 HETATM 77 C C65 CDL . . . PA 31 141.219 155.758 120.777 1 55.46 ? C65 CDL 101 k 1 HETATM 78 C C66 CDL . . . PA 31 140.334 156.01 119.561 1 57.49 ? C66 CDL 101 k 1 HETATM 79 C C67 CDL . . . PA 31 139.737 154.72 119.001 1 56.17 ? C67 CDL 101 k 1 HETATM 80 C CB6 CDL . . . PA 31 142.744 151.605 135.017 1 51.25 ? CB6 CDL 101 k 1 HETATM 81 O OB8 CDL . . . PA 31 141.609 151.823 134.184 1 54.18 ? OB8 CDL 101 k 1 HETATM 82 C CB7 CDL . . . PA 31 141.458 150.852 133.164 1 52.05 ? CB7 CDL 101 k 1 HETATM 83 O OB9 CDL . . . PA 31 141.67 149.711 133.404 1 55.17 ? OB9 CDL 101 k 1 HETATM 84 C C71 CDL . . . PA 31 141.013 151.261 131.741 1 51.35 ? C71 CDL 101 k 1 HETATM 85 C C72 CDL . . . PA 31 140.74 150.035 130.858 1 51.31 ? C72 CDL 101 k 1 HETATM 86 C C73 CDL . . . PA 31 139.993 150.388 129.562 1 53.05 ? C73 CDL 101 k 1 HETATM 87 C C74 CDL . . . PA 31 138.682 149.599 129.414 1 50.46 ? C74 CDL 101 k 1 HETATM 88 C C75 CDL . . . PA 31 138.05 149.711 127.999 1 54.9 ? C75 CDL 101 k 1 HETATM 89 C C76 CDL . . . PA 31 138.658 150.85 127.138 1 59.31 ? C76 CDL 101 k 1 HETATM 90 C C77 CDL . . . PA 31 138.967 150.386 125.682 1 57.99 ? C77 CDL 101 k 1 HETATM 91 C C78 CDL . . . PA 31 140.105 151.191 125.037 1 56.51 ? C78 CDL 101 k 1 HETATM 92 C C79 CDL . . . PA 31 140.245 150.91 123.524 1 50.9 ? C79 CDL 101 k 1 HETATM 93 C C80 CDL . . . PA 31 141.195 151.918 122.825 1 55.24 ? C80 CDL 101 k 1 HETATM 94 C C81 CDL . . . PA 31 142.671 151.537 122.952 1 59.58 ? C81 CDL 101 k 1 HETATM 95 C C82 CDL . . . PA 31 143.124 150.568 121.821 1 57.01 ? C82 CDL 101 k 1 HETATM 96 C C83 CDL . . . PA 31 144.646 150.33 121.813 1 49.62 ? C83 CDL 101 k 1 HETATM 97 C C84 CDL . . . PA 31 145.049 149.182 120.855 1 55.86 ? C84 CDL 101 k 1 HETATM 98 C C85 CDL . . . PA 31 145.165 149.652 119.392 1 58.47 ? C85 CDL 101 k 1 HETATM 99 C C86 CDL . . . PA 31 145.786 148.589 118.481 1 55.66 ? C86 CDL 101 k 1 HETATM 100 C C87 CDL . . . PA 31 144.742 147.646 117.887 1 49.1 ? C87 CDL 101 k 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 100 #