data_7VY9 # _model_server_result.job_id qEsu0uWyQR6NXIBB7mpP5Q _model_server_result.datetime_utc '2024-12-21 16:10:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":201}' # _entry.id 7VY9 # _exptl.entry_id 7VY9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 EA N N ? 31 FA N N ? 31 IA N N ? 31 LA N N ? 31 PA N N ? 31 RA N N ? 31 SA N N ? 31 VA N N ? 31 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VY9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 31 CDL V 1 202 203 CDL CDL . GA 30 PEE W 1 201 202 PEE PEE . HA 32 8Q1 X 1 201 201 8Q1 8Q1 . IA 31 CDL a 1 201 201 CDL CDL . JA 33 PLX a 1 202 101 PLX PLX . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 30 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 CDL k 1 101 101 CDL CDL . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 712 CDL CDL . SA 31 CDL l 1 703 713 CDL CDL . TA 30 PEE l 1 704 719 PEE PEE . UA 30 PEE l 1 705 720 PEE PEE . VA 31 CDL n 1 101 102 CDL CDL . WA 30 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 205 PLX PLX . YA 33 PLX r 1 503 201 PLX PLX . ZA 30 PEE s 1 401 201 PEE PEE . AB 31 CDL s 1 402 201 CDL CDL . BB 30 PEE s 1 403 401 PEE PEE . CB 34 UQ s 1 404 402 UQ UQ . DB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . IA 31 235.162 173.317 98.189 1 49.15 ? C1 CDL 201 a 1 HETATM 2 O O1 CDL . . . IA 31 235.234 172.673 96.952 1 49 ? O1 CDL 201 a 1 HETATM 3 C CA2 CDL . . . IA 31 236.412 172.912 99.01 1 54.06 ? CA2 CDL 201 a 1 HETATM 4 O OA2 CDL . . . IA 31 237.379 173.941 98.871 1 56.98 ? OA2 CDL 201 a 1 HETATM 5 P PA1 CDL . . . IA 31 238.952 173.512 98.577 1 55.77 ? PA1 CDL 201 a 1 HETATM 6 O OA3 CDL . . . IA 31 238.997 172.516 97.447 1 52.14 ? OA3 CDL 201 a 1 HETATM 7 O OA4 CDL . . . IA 31 239.735 174.732 98.195 1 49.78 ? OA4 CDL 201 a 1 HETATM 8 O OA5 CDL . . . IA 31 239.603 172.841 99.949 1 45.62 ? OA5 CDL 201 a 1 HETATM 9 C CA3 CDL . . . IA 31 239.9 173.706 101.032 1 48.4 ? CA3 CDL 201 a 1 HETATM 10 C CA4 CDL . . . IA 31 240.464 172.879 102.177 1 49.64 ? CA4 CDL 201 a 1 HETATM 11 O OA6 CDL . . . IA 31 239.785 173.206 103.358 1 51.36 ? OA6 CDL 201 a 1 HETATM 12 C CA5 CDL . . . IA 31 238.568 172.496 103.543 1 53.42 ? CA5 CDL 201 a 1 HETATM 13 O OA7 CDL . . . IA 31 238.439 171.404 103.084 1 55.11 ? OA7 CDL 201 a 1 HETATM 14 C C11 CDL . . . IA 31 237.398 173.152 104.341 1 50.59 ? C11 CDL 201 a 1 HETATM 15 C C12 CDL . . . IA 31 237.525 172.923 105.851 1 50.28 ? C12 CDL 201 a 1 HETATM 16 C C13 CDL . . . IA 31 236.774 171.68 106.32 1 48.08 ? C13 CDL 201 a 1 HETATM 17 C C14 CDL . . . IA 31 236.079 171.903 107.677 1 48.79 ? C14 CDL 201 a 1 HETATM 18 C C15 CDL . . . IA 31 234.736 171.125 107.784 1 53.59 ? C15 CDL 201 a 1 HETATM 19 C C16 CDL . . . IA 31 234.091 171.252 109.186 1 50.53 ? C16 CDL 201 a 1 HETATM 20 C C17 CDL . . . IA 31 233.265 169.987 109.573 1 53.13 ? C17 CDL 201 a 1 HETATM 21 C C18 CDL . . . IA 31 232.971 169.92 111.092 1 53.37 ? C18 CDL 201 a 1 HETATM 22 C C19 CDL . . . IA 31 231.846 168.903 111.436 1 49.77 ? C19 CDL 201 a 1 HETATM 23 C C20 CDL . . . IA 31 231.828 168.549 112.941 1 51.21 ? C20 CDL 201 a 1 HETATM 24 C C21 CDL . . . IA 31 231.936 169.814 113.832 1 49.89 ? C21 CDL 201 a 1 HETATM 25 C C22 CDL . . . IA 31 232.278 169.475 115.31 1 52.23 ? C22 CDL 201 a 1 HETATM 26 C C23 CDL . . . IA 31 233.154 170.562 115.975 1 54.08 ? C23 CDL 201 a 1 HETATM 27 C C24 CDL . . . IA 31 234.669 170.35 115.714 1 55.14 ? C24 CDL 201 a 1 HETATM 28 C C25 CDL . . . IA 31 235.183 171.166 114.514 1 51.8 ? C25 CDL 201 a 1 HETATM 29 C C26 CDL . . . IA 31 236.712 171.037 114.329 1 48.46 ? C26 CDL 201 a 1 HETATM 30 C C27 CDL . . . IA 31 237.486 171.433 115.592 1 51.28 ? C27 CDL 201 a 1 HETATM 31 C CA6 CDL . . . IA 31 241.961 173.199 102.343 1 51.78 ? CA6 CDL 201 a 1 HETATM 32 O OA8 CDL . . . IA 31 242.125 174.6 102.255 1 54.78 ? OA8 CDL 201 a 1 HETATM 33 C CA7 CDL . . . IA 31 243.385 175.072 102.738 1 51.32 ? CA7 CDL 201 a 1 HETATM 34 O OA9 CDL . . . IA 31 244.057 174.376 103.416 1 53.92 ? OA9 CDL 201 a 1 HETATM 35 C C31 CDL . . . IA 31 243.864 176.49 102.377 1 48.17 ? C31 CDL 201 a 1 HETATM 36 C C32 CDL . . . IA 31 243.608 177.488 103.503 1 51.86 ? C32 CDL 201 a 1 HETATM 37 C C33 CDL . . . IA 31 244.373 178.805 103.308 1 53.1 ? C33 CDL 201 a 1 HETATM 38 C C34 CDL . . . IA 31 245.792 178.77 103.922 1 49.2 ? C34 CDL 201 a 1 HETATM 39 C C35 CDL . . . IA 31 246.881 179.162 102.889 1 47.69 ? C35 CDL 201 a 1 HETATM 40 C C36 CDL . . . IA 31 248.231 179.523 103.552 1 50.65 ? C36 CDL 201 a 1 HETATM 41 C C37 CDL . . . IA 31 248.741 178.428 104.504 1 49.68 ? C37 CDL 201 a 1 HETATM 42 C C38 CDL . . . IA 31 249.93 177.645 103.93 1 51.53 ? C38 CDL 201 a 1 HETATM 43 C C39 CDL . . . IA 31 250.788 178.484 102.962 1 52.1 ? C39 CDL 201 a 1 HETATM 44 C C40 CDL . . . IA 31 252.073 179.024 103.629 1 55.68 ? C40 CDL 201 a 1 HETATM 45 C C41 CDL . . . IA 31 253.282 178.03 103.523 1 53.4 ? C41 CDL 201 a 1 HETATM 46 C C42 CDL . . . IA 31 254.02 178.132 102.16 1 54.34 ? C42 CDL 201 a 1 HETATM 47 C C43 CDL . . . IA 31 254.599 179.552 101.895 1 57.35 ? C43 CDL 201 a 1 HETATM 48 C C44 CDL . . . IA 31 255.527 180.05 103.036 1 52.02 ? C44 CDL 201 a 1 HETATM 49 C C45 CDL . . . IA 31 255.922 181.514 102.853 1 52.96 ? C45 CDL 201 a 1 HETATM 50 C C46 CDL . . . IA 31 256.762 182.054 104.028 1 54.08 ? C46 CDL 201 a 1 HETATM 51 C C47 CDL . . . IA 31 256.526 183.542 104.271 1 46.7 ? C47 CDL 201 a 1 HETATM 52 C CB2 CDL . . . IA 31 233.821 172.892 98.879 1 48.89 ? CB2 CDL 201 a 1 HETATM 53 O OB2 CDL . . . IA 31 234.132 172.301 100.134 1 56.02 ? OB2 CDL 201 a 1 HETATM 54 P PB2 CDL . . . IA 31 232.873 171.993 101.199 1 54.49 ? PB2 CDL 201 a 1 HETATM 55 O OB3 CDL . . . IA 31 231.573 171.933 100.424 1 49.52 ? OB3 CDL 201 a 1 HETATM 56 O OB4 CDL . . . IA 31 233.103 170.672 101.89 1 48.01 ? OB4 CDL 201 a 1 HETATM 57 O OB5 CDL . . . IA 31 232.787 173.218 102.34 1 50.23 ? OB5 CDL 201 a 1 HETATM 58 C CB3 CDL . . . IA 31 233.262 172.952 103.654 1 49.26 ? CB3 CDL 201 a 1 HETATM 59 C CB4 CDL . . . IA 31 232.745 174.049 104.595 1 51.97 ? CB4 CDL 201 a 1 HETATM 60 O OB6 CDL . . . IA 31 233.725 174.319 105.57 1 57.25 ? OB6 CDL 201 a 1 HETATM 61 C CB5 CDL . . . IA 31 233.782 175.674 106.008 1 53.88 ? CB5 CDL 201 a 1 HETATM 62 O OB7 CDL . . . IA 31 232.856 176.158 106.567 1 49.69 ? OB7 CDL 201 a 1 HETATM 63 C C51 CDL . . . IA 31 235.053 176.513 105.76 1 52 ? C51 CDL 201 a 1 HETATM 64 C C52 CDL . . . IA 31 234.986 177.896 106.433 1 51.78 ? C52 CDL 201 a 1 HETATM 65 C C53 CDL . . . IA 31 235.028 179.054 105.421 1 52.77 ? C53 CDL 201 a 1 HETATM 66 C C54 CDL . . . IA 31 234.713 180.413 106.083 1 50.74 ? C54 CDL 201 a 1 HETATM 67 C C55 CDL . . . IA 31 235.729 181.506 105.717 1 51.47 ? C55 CDL 201 a 1 HETATM 68 C C56 CDL . . . IA 31 235.6 182.757 106.626 1 51.43 ? C56 CDL 201 a 1 HETATM 69 C C57 CDL . . . IA 31 234.711 183.855 106.003 1 49.85 ? C57 CDL 201 a 1 HETATM 70 C C58 CDL . . . IA 31 233.919 184.65 107.07 1 50.93 ? C58 CDL 201 a 1 HETATM 71 C C59 CDL . . . IA 31 232.699 185.392 106.469 1 51.4 ? C59 CDL 201 a 1 HETATM 72 C C60 CDL . . . IA 31 231.74 185.924 107.551 1 52.78 ? C60 CDL 201 a 1 HETATM 73 C C61 CDL . . . IA 31 232.28 187.203 108.247 1 52.91 ? C61 CDL 201 a 1 HETATM 74 C C62 CDL . . . IA 31 231.405 187.653 109.438 1 48.58 ? C62 CDL 201 a 1 HETATM 75 C C63 CDL . . . IA 31 232.027 187.318 110.803 1 50.25 ? C63 CDL 201 a 1 HETATM 76 C C64 CDL . . . IA 31 231.785 185.86 111.226 1 55.63 ? C64 CDL 201 a 1 HETATM 77 C C65 CDL . . . IA 31 233.075 185.143 111.608 1 55.71 ? C65 CDL 201 a 1 HETATM 78 C C66 CDL . . . IA 31 232.838 183.69 112.004 1 49.01 ? C66 CDL 201 a 1 HETATM 79 C C67 CDL . . . IA 31 233.992 182.781 111.581 1 49.66 ? C67 CDL 201 a 1 HETATM 80 C CB6 CDL . . . IA 31 231.467 173.564 105.271 1 51.69 ? CB6 CDL 201 a 1 HETATM 81 O OB8 CDL . . . IA 31 231.741 172.32 105.908 1 51.5 ? OB8 CDL 201 a 1 HETATM 82 C CB7 CDL . . . IA 31 230.595 171.513 106.111 1 52.52 ? CB7 CDL 201 a 1 HETATM 83 O OB9 CDL . . . IA 31 229.844 171.322 105.213 1 58.56 ? OB9 CDL 201 a 1 HETATM 84 C C71 CDL . . . IA 31 230.32 170.881 107.495 1 45.35 ? C71 CDL 201 a 1 HETATM 85 C C72 CDL . . . IA 31 228.985 171.348 108.09 1 48.23 ? C72 CDL 201 a 1 HETATM 86 C C73 CDL . . . IA 31 228.606 170.588 109.373 1 50.93 ? C73 CDL 201 a 1 HETATM 87 C C74 CDL . . . IA 31 228.047 171.529 110.452 1 51.23 ? C74 CDL 201 a 1 HETATM 88 C C75 CDL . . . IA 31 227.38 170.764 111.627 1 53.28 ? C75 CDL 201 a 1 HETATM 89 C C76 CDL . . . IA 31 227.985 171.139 113.005 1 54.39 ? C76 CDL 201 a 1 HETATM 90 C C77 CDL . . . IA 31 228.291 169.889 113.885 1 47.96 ? C77 CDL 201 a 1 HETATM 91 C C78 CDL . . . IA 31 227.73 170.022 115.308 1 49.13 ? C78 CDL 201 a 1 HETATM 92 C C79 CDL . . . IA 31 227.959 171.429 115.902 1 48.85 ? C79 CDL 201 a 1 HETATM 93 C C80 CDL . . . IA 31 227.73 171.475 117.435 1 45.45 ? C80 CDL 201 a 1 HETATM 94 C C81 CDL . . . IA 31 227.734 172.905 117.976 1 53.01 ? C81 CDL 201 a 1 HETATM 95 C C82 CDL . . . IA 31 228.056 172.969 119.498 1 50.59 ? C82 CDL 201 a 1 HETATM 96 C C83 CDL . . . IA 31 229.534 172.652 119.794 1 54.06 ? C83 CDL 201 a 1 HETATM 97 C C84 CDL . . . IA 31 229.879 172.771 121.299 1 52.59 ? C84 CDL 201 a 1 HETATM 98 C C85 CDL . . . IA 31 231.339 173.201 121.543 1 53.32 ? C85 CDL 201 a 1 HETATM 99 C C86 CDL . . . IA 31 232.354 172.193 120.997 1 51.16 ? C86 CDL 201 a 1 HETATM 100 C C87 CDL . . . IA 31 233.158 172.753 119.823 1 49.6 ? C87 CDL 201 a 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 87 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 100 #