data_7VY9
#
_model_server_result.job_id            HWkFaMdJ4nhqPsG59Iz-Lw 
_model_server_result.datetime_utc      '2024-12-21 15:43:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KA","auth_seq_id":201}' 
#
_entry.id    7VY9 
#
_exptl.entry_id    7VY9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.132 
_entity.id                          33 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 33 JA N N 
? 33 KA N N 
? 33 NA N N 
? 33 OA N N 
? 33 XA N N 
? 33 YA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C42 H89 N O8 P 1' 
_chem_comp.formula_weight    767.132 
_chem_comp.id                PLX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VY9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE Q 1 101 718 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 31 CDL V 1 202 203 CDL CDL . 
GA 30 PEE W 1 201 202 PEE PEE . 
HA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
IA 31 CDL a 1 201 201 CDL CDL . 
JA 33 PLX a 1 202 101 PLX PLX . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 30 PEE j 1 201 101 PEE PEE . 
NA 33 PLX j 1 202 202 PLX PLX . 
OA 33 PLX j 1 203 203 PLX PLX . 
PA 31 CDL k 1 101 101 CDL CDL . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 712 CDL CDL . 
SA 31 CDL l 1 703 713 CDL CDL . 
TA 30 PEE l 1 704 719 PEE PEE . 
UA 30 PEE l 1 705 720 PEE PEE . 
VA 31 CDL n 1 101 102 CDL CDL . 
WA 30 PEE r 1 501 202 PEE PEE . 
XA 33 PLX r 1 502 205 PLX PLX . 
YA 33 PLX r 1 503 201 PLX PLX . 
ZA 30 PEE s 1 401 201 PEE PEE . 
AB 31 CDL s 1 402 201 CDL CDL . 
BB 30 PEE s 1 403 401 PEE PEE . 
CB 34 UQ s 1 404 402 UQ UQ . 
DB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 PLX . . . KA 33 185.308 140.592 117.078 1 44.75 ? C23 PLX 201 g 1 
HETATM 2 C C22 PLX . . . KA 33 184.963 139.491 116.032 1 44.2 ? C22 PLX 201 g 1 
HETATM 3 C C21 PLX . . . KA 33 183.689 138.68 116.433 1 40.96 ? C21 PLX 201 g 1 
HETATM 4 C C20 PLX . . . KA 33 183.481 137.431 115.517 1 46.41 ? C20 PLX 201 g 1 
HETATM 5 C C19 PLX . . . KA 33 182.438 136.423 116.107 1 44.96 ? C19 PLX 201 g 1 
HETATM 6 C C18 PLX . . . KA 33 183.078 135.018 116.408 1 48.12 ? C18 PLX 201 g 1 
HETATM 7 C C17 PLX . . . KA 33 184.266 134.676 115.423 1 49.6 ? C17 PLX 201 g 1 
HETATM 8 C C16 PLX . . . KA 33 184.269 133.17 114.99 1 52.58 ? C16 PLX 201 g 1 
HETATM 9 C C15 PLX . . . KA 33 183.079 132.819 114.02 1 46.4 ? C15 PLX 201 g 1 
HETATM 10 C C14 PLX . . . KA 33 182.683 131.305 114.095 1 44.35 ? C14 PLX 201 g 1 
HETATM 11 C C13 PLX . . . KA 33 182.828 130.587 112.701 1 44.19 ? C13 PLX 201 g 1 
HETATM 12 C C12 PLX . . . KA 33 181.74 129.483 112.485 1 48.12 ? C12 PLX 201 g 1 
HETATM 13 C C11 PLX . . . KA 33 180.385 130.089 111.985 1 49.68 ? C11 PLX 201 g 1 
HETATM 14 C C10 PLX . . . KA 33 179.867 129.44 110.66 1 42.75 ? C10 PLX 201 g 1 
HETATM 15 C C9 PLX . . . KA 33 180.886 128.427 110.018 1 42.98 ? C9 PLX 201 g 1 
HETATM 16 C C8 PLX . . . KA 33 180.176 127.248 109.249 1 44.86 ? C8 PLX 201 g 1 
HETATM 17 C C7 PLX . . . KA 33 178.642 127.518 108.982 1 44.55 ? C7 PLX 201 g 1 
HETATM 18 C C6 PLX . . . KA 33 178.383 128.175 107.6 1 48.74 ? C6 PLX 201 g 1 
HETATM 19 O O7 PLX . . . KA 33 177.377 127.495 106.951 1 52.44 ? O7 PLX 201 g 1 
HETATM 20 O O6 PLX . . . KA 33 177.998 129.529 107.774 1 51.51 ? O6 PLX 201 g 1 
HETATM 21 C C4 PLX . . . KA 33 177.646 130.177 106.578 1 44.5 ? C4 PLX 201 g 1 
HETATM 22 C C3 PLX . . . KA 33 176.189 130.654 106.662 1 44.1 ? C3 PLX 201 g 1 
HETATM 23 O O4 PLX . . . KA 33 175.76 131.012 105.345 1 37.81 ? O4 PLX 201 g 1 
HETATM 24 P P1 PLX . . . KA 33 174.251 131.714 105.16 1 51.58 ? P1 PLX 201 g 1 
HETATM 25 O O1 PLX . . . KA 33 174.075 132.965 106.251 1 50.11 ? O1 PLX 201 g 1 
HETATM 26 C C2 PLX . . . KA 33 172.758 133.264 106.717 1 42.28 ? C2 PLX 201 g 1 
HETATM 27 C C1 PLX . . . KA 33 172.762 134.7 107.345 1 40.1 ? C1 PLX 201 g 1 
HETATM 28 N N1 PLX . . . KA 33 172.998 135.756 106.302 1 48.45 ? N1 PLX 201 g 1 
HETATM 29 C C1C PLX . . . KA 33 172.091 136.875 106.621 1 45.95 ? C1C PLX 201 g 1 
HETATM 30 C C1B PLX . . . KA 33 174.425 136.173 106.449 1 43.26 ? C1B PLX 201 g 1 
HETATM 31 C C1A PLX . . . KA 33 172.784 135.452 104.863 1 45.54 ? C1A PLX 201 g 1 
HETATM 32 O O2 PLX . . . KA 33 173.158 130.696 105.399 1 48.62 ? O2 PLX 201 g 1 
HETATM 33 C C5 PLX . . . KA 33 178.565 131.394 106.367 1 47.93 ? C5 PLX 201 g 1 
HETATM 34 O O8 PLX . . . KA 33 179.237 131.671 107.598 1 51.18 ? O8 PLX 201 g 1 
HETATM 35 C C24 PLX . . . KA 33 178.795 132.834 108.268 1 45.79 ? C24 PLX 201 g 1 
HETATM 36 O O9 PLX . . . KA 33 177.741 133.414 107.575 1 45.06 ? O9 PLX 201 g 1 
HETATM 37 C C25 PLX . . . KA 33 179.96 133.841 108.364 1 46.42 ? C25 PLX 201 g 1 
HETATM 38 C C26 PLX . . . KA 33 180.789 133.669 109.677 1 44.52 ? C26 PLX 201 g 1 
HETATM 39 C C27 PLX . . . KA 33 182.135 134.459 109.637 1 42.06 ? C27 PLX 201 g 1 
HETATM 40 C C28 PLX . . . KA 33 182.335 135.348 110.91 1 45.99 ? C28 PLX 201 g 1 
HETATM 41 C C29 PLX . . . KA 33 183.582 136.283 110.793 1 44.4 ? C29 PLX 201 g 1 
HETATM 42 C C30 PLX . . . KA 33 183.185 137.748 110.375 1 43.91 ? C30 PLX 201 g 1 
HETATM 43 C C31 PLX . . . KA 33 183.573 138.804 111.476 1 41.24 ? C31 PLX 201 g 1 
HETATM 44 C C32 PLX . . . KA 33 183.286 140.285 111.011 1 42.05 ? C32 PLX 201 g 1 
HETATM 45 C C33 PLX . . . KA 33 184.612 141.065 110.649 1 42.43 ? C33 PLX 201 g 1 
HETATM 46 C C34 PLX . . . KA 33 185.438 141.455 111.938 1 36.97 ? C34 PLX 201 g 1 
HETATM 47 C C35 PLX . . . KA 33 186.927 140.915 111.867 1 39.14 ? C35 PLX 201 g 1 
HETATM 48 C C36 PLX . . . KA 33 187.117 139.566 112.645 1 42.28 ? C36 PLX 201 g 1 
HETATM 49 C C37 PLX . . . KA 33 188.516 138.913 112.352 1 39.11 ? C37 PLX 201 g 1 
HETATM 50 C C38 PLX . . . KA 33 188.652 137.489 112.98 1 44.63 ? C38 PLX 201 g 1 
HETATM 51 C C39 PLX . . . KA 33 188.481 137.509 114.518 1 43.69 ? C39 PLX 201 g 1 
HETATM 52 O O3 PLX . . . KA 33 174.123 132.25 103.749 1 48.75 ? O3 PLX 201 g 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    66 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           52 
#