data_7VY9 # _model_server_result.job_id QB67VNwhE4UlBDahwLmE0w _model_server_result.datetime_utc '2024-12-21 16:09:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"FA","auth_seq_id":202}' # _entry.id 7VY9 # _exptl.entry_id 7VY9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 EA N N ? 31 FA N N ? 31 IA N N ? 31 LA N N ? 31 PA N N ? 31 RA N N ? 31 SA N N ? 31 VA N N ? 31 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VY9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 31 CDL V 1 202 203 CDL CDL . GA 30 PEE W 1 201 202 PEE PEE . HA 32 8Q1 X 1 201 201 8Q1 8Q1 . IA 31 CDL a 1 201 201 CDL CDL . JA 33 PLX a 1 202 101 PLX PLX . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 30 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 CDL k 1 101 101 CDL CDL . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 712 CDL CDL . SA 31 CDL l 1 703 713 CDL CDL . TA 30 PEE l 1 704 719 PEE PEE . UA 30 PEE l 1 705 720 PEE PEE . VA 31 CDL n 1 101 102 CDL CDL . WA 30 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 205 PLX PLX . YA 33 PLX r 1 503 201 PLX PLX . ZA 30 PEE s 1 401 201 PEE PEE . AB 31 CDL s 1 402 201 CDL CDL . BB 30 PEE s 1 403 401 PEE PEE . CB 34 UQ s 1 404 402 UQ UQ . DB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . FA 31 169.09 189.512 137.56 1 72.77 ? C1 CDL 202 V 1 HETATM 2 O O1 CDL . . . FA 31 170.334 189.447 138.192 1 72.67 ? O1 CDL 202 V 1 HETATM 3 C CA2 CDL . . . FA 31 168.379 190.809 138.023 1 71.82 ? CA2 CDL 202 V 1 HETATM 4 O OA2 CDL . . . FA 31 168.405 191.728 136.941 1 76.33 ? OA2 CDL 202 V 1 HETATM 5 P PA1 CDL . . . FA 31 167.638 193.188 137.114 1 90.43 ? PA1 CDL 202 V 1 HETATM 6 O OA3 CDL . . . FA 31 166.407 193.015 137.97 1 76.45 ? OA3 CDL 202 V 1 HETATM 7 O OA4 CDL . . . FA 31 168.568 194.171 137.761 1 75.93 ? OA4 CDL 202 V 1 HETATM 8 O OA5 CDL . . . FA 31 167.197 193.752 135.615 1 70.88 ? OA5 CDL 202 V 1 HETATM 9 C CA3 CDL . . . FA 31 166.975 192.805 134.581 1 70.6 ? CA3 CDL 202 V 1 HETATM 10 C CA4 CDL . . . FA 31 166.595 193.555 133.312 1 73.39 ? CA4 CDL 202 V 1 HETATM 11 O OA6 CDL . . . FA 31 167.262 192.995 132.214 1 73.31 ? OA6 CDL 202 V 1 HETATM 12 C CA5 CDL . . . FA 31 166.591 193.185 130.975 1 71.82 ? CA5 CDL 202 V 1 HETATM 13 O OA7 CDL . . . FA 31 165.418 193.398 130.956 1 74.36 ? OA7 CDL 202 V 1 HETATM 14 C C11 CDL . . . FA 31 167.399 193.123 129.642 1 71.79 ? C11 CDL 202 V 1 HETATM 15 C C12 CDL . . . FA 31 166.591 192.538 128.479 1 71.7 ? C12 CDL 202 V 1 HETATM 16 C C13 CDL . . . FA 31 167.486 192.204 127.287 1 74.71 ? C13 CDL 202 V 1 HETATM 17 C C14 CDL . . . FA 31 167.48 193.314 126.218 1 73.55 ? C14 CDL 202 V 1 HETATM 18 C C15 CDL . . . FA 31 168.907 193.611 125.672 1 70.81 ? C15 CDL 202 V 1 HETATM 19 C C16 CDL . . . FA 31 169.027 193.356 124.149 1 71.7 ? C16 CDL 202 V 1 HETATM 20 C C17 CDL . . . FA 31 170.507 193.185 123.691 1 72.28 ? C17 CDL 202 V 1 HETATM 21 C C18 CDL . . . FA 31 170.628 192.407 122.356 1 71.86 ? C18 CDL 202 V 1 HETATM 22 C C19 CDL . . . FA 31 172.024 192.583 121.693 1 72.26 ? C19 CDL 202 V 1 HETATM 23 C C20 CDL . . . FA 31 172.057 193.769 120.698 1 72.13 ? C20 CDL 202 V 1 HETATM 24 C C21 CDL . . . FA 31 173.49 194.076 120.186 1 72.22 ? C21 CDL 202 V 1 HETATM 25 C C22 CDL . . . FA 31 174.213 192.808 119.648 1 72.18 ? C22 CDL 202 V 1 HETATM 26 C C23 CDL . . . FA 31 175.649 193.113 119.163 1 71.81 ? C23 CDL 202 V 1 HETATM 27 C C24 CDL . . . FA 31 175.676 193.765 117.756 1 73.41 ? C24 CDL 202 V 1 HETATM 28 C C25 CDL . . . FA 31 177.057 194.353 117.415 1 71.66 ? C25 CDL 202 V 1 HETATM 29 C C26 CDL . . . FA 31 177.149 194.83 115.947 1 72.14 ? C26 CDL 202 V 1 HETATM 30 C C27 CDL . . . FA 31 178.536 195.38 115.598 1 69.02 ? C27 CDL 202 V 1 HETATM 31 C CA6 CDL . . . FA 31 166.993 195.037 133.45 1 73.75 ? CA6 CDL 202 V 1 HETATM 32 O OA8 CDL . . . FA 31 168.127 195.281 132.642 1 75.87 ? OA8 CDL 202 V 1 HETATM 33 C CA7 CDL . . . FA 31 169.317 195.561 133.384 1 73.54 ? CA7 CDL 202 V 1 HETATM 34 O OA9 CDL . . . FA 31 169.353 195.344 134.545 1 71.89 ? OA9 CDL 202 V 1 HETATM 35 C C31 CDL . . . FA 31 170.548 196.156 132.673 1 72.2 ? C31 CDL 202 V 1 HETATM 36 C C32 CDL . . . FA 31 170.413 196.132 131.153 1 69.91 ? C32 CDL 202 V 1 HETATM 37 C C33 CDL . . . FA 31 171.152 194.942 130.523 1 71.35 ? C33 CDL 202 V 1 HETATM 38 C C34 CDL . . . FA 31 170.705 194.64 129.072 1 72.94 ? C34 CDL 202 V 1 HETATM 39 C C35 CDL . . . FA 31 169.924 195.809 128.413 1 70.78 ? C35 CDL 202 V 1 HETATM 40 C C36 CDL . . . FA 31 170.786 196.604 127.404 1 72.01 ? C36 CDL 202 V 1 HETATM 41 C C37 CDL . . . FA 31 171.39 197.876 128.02 1 69.67 ? C37 CDL 202 V 1 HETATM 42 C C38 CDL . . . FA 31 172.861 198.078 127.634 1 71.33 ? C38 CDL 202 V 1 HETATM 43 C C39 CDL . . . FA 31 173.097 197.932 126.118 1 72.59 ? C39 CDL 202 V 1 HETATM 44 C C40 CDL . . . FA 31 173.456 199.278 125.449 1 73.41 ? C40 CDL 202 V 1 HETATM 45 C C41 CDL . . . FA 31 174.02 199.095 123.997 1 71.17 ? C41 CDL 202 V 1 HETATM 46 C C42 CDL . . . FA 31 175.186 198.069 123.949 1 72.52 ? C42 CDL 202 V 1 HETATM 47 C C43 CDL . . . FA 31 176.039 198.205 122.655 1 72.34 ? C43 CDL 202 V 1 HETATM 48 C C44 CDL . . . FA 31 175.281 197.708 121.395 1 74.17 ? C44 CDL 202 V 1 HETATM 49 C C45 CDL . . . FA 31 175.521 198.606 120.184 1 73.07 ? C45 CDL 202 V 1 HETATM 50 C C46 CDL . . . FA 31 176.933 198.439 119.592 1 72.24 ? C46 CDL 202 V 1 HETATM 51 C C47 CDL . . . FA 31 177.43 199.716 118.922 1 68.93 ? C47 CDL 202 V 1 HETATM 52 C CB2 CDL . . . FA 31 168.286 188.215 137.919 1 71.53 ? CB2 CDL 202 V 1 HETATM 53 O OB2 CDL . . . FA 31 168.117 187.456 136.729 1 77.61 ? OB2 CDL 202 V 1 HETATM 54 P PB2 CDL . . . FA 31 168.057 185.782 136.839 1 91.17 ? PB2 CDL 202 V 1 HETATM 55 O OB3 CDL . . . FA 31 167.933 185.378 138.297 1 74.21 ? OB3 CDL 202 V 1 HETATM 56 O OB4 CDL . . . FA 31 166.868 185.264 136.065 1 70.33 ? OB4 CDL 202 V 1 HETATM 57 O OB5 CDL . . . FA 31 169.465 185.139 136.196 1 76.82 ? OB5 CDL 202 V 1 HETATM 58 C CB3 CDL . . . FA 31 170.601 185.988 136.104 1 69.06 ? CB3 CDL 202 V 1 HETATM 59 C CB4 CDL . . . FA 31 171.022 186.109 134.631 1 69.68 ? CB4 CDL 202 V 1 HETATM 60 O OB6 CDL . . . FA 31 170.271 187.116 133.992 1 69.7 ? OB6 CDL 202 V 1 HETATM 61 C CB5 CDL . . . FA 31 170.878 188.405 134.029 1 70.9 ? CB5 CDL 202 V 1 HETATM 62 O OB7 CDL . . . FA 31 171.136 188.913 135.068 1 71.2 ? OB7 CDL 202 V 1 HETATM 63 C C51 CDL . . . FA 31 171.21 189.146 132.719 1 66.87 ? C51 CDL 202 V 1 HETATM 64 C C52 CDL . . . FA 31 170.001 189.902 132.143 1 68.82 ? C52 CDL 202 V 1 HETATM 65 C C53 CDL . . . FA 31 170.422 190.95 131.102 1 69.81 ? C53 CDL 202 V 1 HETATM 66 C C54 CDL . . . FA 31 170.82 190.304 129.758 1 71.36 ? C54 CDL 202 V 1 HETATM 67 C C55 CDL . . . FA 31 172.235 190.703 129.313 1 71.57 ? C55 CDL 202 V 1 HETATM 68 C C56 CDL . . . FA 31 172.501 190.345 127.827 1 71.22 ? C56 CDL 202 V 1 HETATM 69 C C57 CDL . . . FA 31 173.087 191.533 127.037 1 69.32 ? C57 CDL 202 V 1 HETATM 70 C C58 CDL . . . FA 31 174.465 191.207 126.411 1 68.7 ? C58 CDL 202 V 1 HETATM 71 C C59 CDL . . . FA 31 174.368 190.901 124.895 1 70.96 ? C59 CDL 202 V 1 HETATM 72 C C60 CDL . . . FA 31 173.97 189.441 124.609 1 69.76 ? C60 CDL 202 V 1 HETATM 73 C C61 CDL . . . FA 31 174.293 189.025 123.148 1 72.16 ? C61 CDL 202 V 1 HETATM 74 C C62 CDL . . . FA 31 175.428 187.982 123.063 1 71.21 ? C62 CDL 202 V 1 HETATM 75 C C63 CDL . . . FA 31 174.909 186.582 122.702 1 73.06 ? C63 CDL 202 V 1 HETATM 76 C C64 CDL . . . FA 31 174.083 186.583 121.405 1 72.51 ? C64 CDL 202 V 1 HETATM 77 C C65 CDL . . . FA 31 172.818 185.741 121.521 1 72.66 ? C65 CDL 202 V 1 HETATM 78 C C66 CDL . . . FA 31 171.983 186.117 122.741 1 71.96 ? C66 CDL 202 V 1 HETATM 79 C C67 CDL . . . FA 31 170.486 186.131 122.44 1 68.53 ? C67 CDL 202 V 1 HETATM 80 C CB6 CDL . . . FA 31 170.798 184.774 133.93 1 67.97 ? CB6 CDL 202 V 1 HETATM 81 O OB8 CDL . . . FA 31 170.548 185.017 132.55 1 72.73 ? OB8 CDL 202 V 1 HETATM 82 C CB7 CDL . . . FA 31 171.718 185.102 131.756 1 69.02 ? CB7 CDL 202 V 1 HETATM 83 O OB9 CDL . . . FA 31 172.576 184.292 131.871 1 72.79 ? OB9 CDL 202 V 1 HETATM 84 C C71 CDL . . . FA 31 171.872 186.248 130.731 1 64.95 ? C71 CDL 202 V 1 HETATM 85 C C72 CDL . . . FA 31 173.189 186.165 129.95 1 67.85 ? C72 CDL 202 V 1 HETATM 86 C C73 CDL . . . FA 31 173.023 186.618 128.491 1 69.57 ? C73 CDL 202 V 1 HETATM 87 C C74 CDL . . . FA 31 173.938 185.837 127.537 1 68.13 ? C74 CDL 202 V 1 HETATM 88 C C75 CDL . . . FA 31 175.438 186.035 127.877 1 66.25 ? C75 CDL 202 V 1 HETATM 89 C C76 CDL . . . FA 31 176.301 186.256 126.608 1 69.36 ? C76 CDL 202 V 1 HETATM 90 C C77 CDL . . . FA 31 177.438 187.293 126.841 1 66.59 ? C77 CDL 202 V 1 HETATM 91 C C78 CDL . . . FA 31 178.773 186.614 127.169 1 65.51 ? C78 CDL 202 V 1 HETATM 92 C C79 CDL . . . FA 31 179.077 185.437 126.22 1 67.8 ? C79 CDL 202 V 1 HETATM 93 C C80 CDL . . . FA 31 179.612 185.913 124.845 1 66.49 ? C80 CDL 202 V 1 HETATM 94 C C81 CDL . . . FA 31 180.897 186.728 124.982 1 69.19 ? C81 CDL 202 V 1 HETATM 95 C C82 CDL . . . FA 31 182.069 185.871 125.541 1 67.42 ? C82 CDL 202 V 1 HETATM 96 C C83 CDL . . . FA 31 182.426 184.699 124.608 1 67.97 ? C83 CDL 202 V 1 HETATM 97 C C84 CDL . . . FA 31 182.886 185.175 123.21 1 67.08 ? C84 CDL 202 V 1 HETATM 98 C C85 CDL . . . FA 31 184.414 185.36 123.136 1 67.54 ? C85 CDL 202 V 1 HETATM 99 C C86 CDL . . . FA 31 184.969 185.097 121.733 1 67.79 ? C86 CDL 202 V 1 HETATM 100 C C87 CDL . . . FA 31 184.375 183.84 121.099 1 67.04 ? C87 CDL 202 V 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 358 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 40 _model_server_stats.element_count 100 #