data_7VY9 # _model_server_result.job_id '_ZTLk1vMPIKYw-1ZH4ZatA' _model_server_result.datetime_utc '2024-12-21 15:53:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":202}' # _entry.id 7VY9 # _exptl.entry_id 7VY9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 EA N N ? 31 FA N N ? 31 IA N N ? 31 LA N N ? 31 PA N N ? 31 RA N N ? 31 SA N N ? 31 VA N N ? 31 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VY9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 31 CDL V 1 202 203 CDL CDL . GA 30 PEE W 1 201 202 PEE PEE . HA 32 8Q1 X 1 201 201 8Q1 8Q1 . IA 31 CDL a 1 201 201 CDL CDL . JA 33 PLX a 1 202 101 PLX PLX . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 30 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 CDL k 1 101 101 CDL CDL . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 712 CDL CDL . SA 31 CDL l 1 703 713 CDL CDL . TA 30 PEE l 1 704 719 PEE PEE . UA 30 PEE l 1 705 720 PEE PEE . VA 31 CDL n 1 101 102 CDL CDL . WA 30 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 205 PLX PLX . YA 33 PLX r 1 503 201 PLX PLX . ZA 30 PEE s 1 401 201 PEE PEE . AB 31 CDL s 1 402 201 CDL CDL . BB 30 PEE s 1 403 401 PEE PEE . CB 34 UQ s 1 404 402 UQ UQ . DB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . LA 31 204.361 140.234 137.043 1 52.56 ? C1 CDL 202 g 1 HETATM 2 O O1 CDL . . . LA 31 203.49 139.786 136.047 1 48.56 ? O1 CDL 202 g 1 HETATM 3 C CA2 CDL . . . LA 31 203.773 141.541 137.636 1 51.32 ? CA2 CDL 202 g 1 HETATM 4 O OA2 CDL . . . LA 31 202.369 141.542 137.424 1 55.35 ? OA2 CDL 202 g 1 HETATM 5 P PA1 CDL . . . LA 31 201.482 142.743 138.142 1 68.4 ? PA1 CDL 202 g 1 HETATM 6 O OA3 CDL . . . LA 31 202.324 143.421 139.195 1 56.89 ? OA3 CDL 202 g 1 HETATM 7 O OA4 CDL . . . LA 31 200.264 142.149 138.784 1 55.47 ? OA4 CDL 202 g 1 HETATM 8 O OA5 CDL . . . LA 31 201.014 143.858 137.007 1 44.04 ? OA5 CDL 202 g 1 HETATM 9 C CA3 CDL . . . LA 31 200.138 144.894 137.418 1 47.19 ? CA3 CDL 202 g 1 HETATM 10 C CA4 CDL . . . LA 31 199.923 145.824 136.235 1 50.33 ? CA4 CDL 202 g 1 HETATM 11 O OA6 CDL . . . LA 31 198.804 146.635 136.463 1 56.37 ? OA6 CDL 202 g 1 HETATM 12 C CA5 CDL . . . LA 31 199.114 147.926 136.97 1 51.14 ? CA5 CDL 202 g 1 HETATM 13 O OA7 CDL . . . LA 31 200.124 148.105 137.576 1 48.23 ? OA7 CDL 202 g 1 HETATM 14 C C11 CDL . . . LA 31 198.134 149.115 136.722 1 48 ? C11 CDL 202 g 1 HETATM 15 C C12 CDL . . . LA 31 198.775 150.223 135.882 1 43.65 ? C12 CDL 202 g 1 HETATM 16 C C13 CDL . . . LA 31 197.747 151.029 135.094 1 47.83 ? C13 CDL 202 g 1 HETATM 17 C C14 CDL . . . LA 31 198.187 151.251 133.636 1 44.87 ? C14 CDL 202 g 1 HETATM 18 C C15 CDL . . . LA 31 196.976 151.44 132.68 1 47.84 ? C15 CDL 202 g 1 HETATM 19 C C16 CDL . . . LA 31 197.326 151.091 131.212 1 50.54 ? C16 CDL 202 g 1 HETATM 20 C C17 CDL . . . LA 31 197.076 149.584 130.901 1 52.16 ? C17 CDL 202 g 1 HETATM 21 C C18 CDL . . . LA 31 196.554 149.35 129.461 1 48.45 ? C18 CDL 202 g 1 HETATM 22 C C19 CDL . . . LA 31 197.632 149.633 128.378 1 46.42 ? C19 CDL 202 g 1 HETATM 23 C C20 CDL . . . LA 31 197.614 148.575 127.248 1 53.23 ? C20 CDL 202 g 1 HETATM 24 C C21 CDL . . . LA 31 198.531 148.955 126.056 1 49.99 ? C21 CDL 202 g 1 HETATM 25 C C22 CDL . . . LA 31 199.247 147.725 125.432 1 50.46 ? C22 CDL 202 g 1 HETATM 26 C C23 CDL . . . LA 31 200.317 147.125 126.371 1 50.42 ? C23 CDL 202 g 1 HETATM 27 C C24 CDL . . . LA 31 201.051 145.928 125.716 1 48.67 ? C24 CDL 202 g 1 HETATM 28 C C25 CDL . . . LA 31 202.073 145.278 126.662 1 45.64 ? C25 CDL 202 g 1 HETATM 29 C C26 CDL . . . LA 31 201.506 145.091 128.086 1 46.59 ? C26 CDL 202 g 1 HETATM 30 C C27 CDL . . . LA 31 202.246 143.997 128.861 1 51.22 ? C27 CDL 202 g 1 HETATM 31 C CA6 CDL . . . LA 31 199.69 144.978 134.971 1 44.56 ? CA6 CDL 202 g 1 HETATM 32 O OA8 CDL . . . LA 31 198.923 145.744 134.065 1 47.02 ? OA8 CDL 202 g 1 HETATM 33 C CA7 CDL . . . LA 31 199.334 145.6 132.704 1 51.33 ? CA7 CDL 202 g 1 HETATM 34 O OA9 CDL . . . LA 31 200.402 145.165 132.451 1 54.22 ? OA9 CDL 202 g 1 HETATM 35 C C31 CDL . . . LA 31 198.384 146.015 131.567 1 47.16 ? C31 CDL 202 g 1 HETATM 36 C C32 CDL . . . LA 31 198.2 144.904 130.539 1 50.51 ? C32 CDL 202 g 1 HETATM 37 C C33 CDL . . . LA 31 197.974 145.461 129.127 1 50.43 ? C33 CDL 202 g 1 HETATM 38 C C34 CDL . . . LA 31 196.478 145.472 128.739 1 45.47 ? C34 CDL 202 g 1 HETATM 39 C C35 CDL . . . LA 31 196.233 144.725 127.402 1 50.74 ? C35 CDL 202 g 1 HETATM 40 C C36 CDL . . . LA 31 194.773 144.86 126.913 1 50.91 ? C36 CDL 202 g 1 HETATM 41 C C37 CDL . . . LA 31 194.583 144.249 125.516 1 47.91 ? C37 CDL 202 g 1 HETATM 42 C C38 CDL . . . LA 31 195.605 144.794 124.514 1 47.5 ? C38 CDL 202 g 1 HETATM 43 C C39 CDL . . . LA 31 195.114 146.091 123.844 1 49.75 ? C39 CDL 202 g 1 HETATM 44 C C40 CDL . . . LA 31 196.267 147.055 123.491 1 53.73 ? C40 CDL 202 g 1 HETATM 45 C C41 CDL . . . LA 31 195.731 148.399 122.889 1 54.98 ? C41 CDL 202 g 1 HETATM 46 C C42 CDL . . . LA 31 196.707 149.023 121.855 1 48.87 ? C42 CDL 202 g 1 HETATM 47 C C43 CDL . . . LA 31 196.118 150.294 121.177 1 47.14 ? C43 CDL 202 g 1 HETATM 48 C C44 CDL . . . LA 31 196.607 151.617 121.827 1 41.7 ? C44 CDL 202 g 1 HETATM 49 C C45 CDL . . . LA 31 195.816 151.99 123.079 1 46.87 ? C45 CDL 202 g 1 HETATM 50 C C46 CDL . . . LA 31 196.569 151.647 124.379 1 53.92 ? C46 CDL 202 g 1 HETATM 51 C C47 CDL . . . LA 31 195.628 151.159 125.476 1 46.84 ? C47 CDL 202 g 1 HETATM 52 C CB2 CDL . . . LA 31 205.775 140.449 136.401 1 50.89 ? CB2 CDL 202 g 1 HETATM 53 O OB2 CDL . . . LA 31 206.219 139.212 135.858 1 55.55 ? OB2 CDL 202 g 1 HETATM 54 P PB2 CDL . . . LA 31 205.94 138.941 134.226 1 73.88 ? PB2 CDL 202 g 1 HETATM 55 O OB3 CDL . . . LA 31 207.26 138.847 133.484 1 55.42 ? OB3 CDL 202 g 1 HETATM 56 O OB4 CDL . . . LA 31 205.172 137.651 134.056 1 44.85 ? OB4 CDL 202 g 1 HETATM 57 O OB5 CDL . . . LA 31 205.042 140.221 133.623 1 52.17 ? OB5 CDL 202 g 1 HETATM 58 C CB3 CDL . . . LA 31 205.479 140.862 132.433 1 45.36 ? CB3 CDL 202 g 1 HETATM 59 C CB4 CDL . . . LA 31 204.368 140.699 131.385 1 53.29 ? CB4 CDL 202 g 1 HETATM 60 O OB6 CDL . . . LA 31 204.681 141.436 130.225 1 52.36 ? OB6 CDL 202 g 1 HETATM 61 C CB5 CDL . . . LA 31 205.369 140.683 129.231 1 49.41 ? CB5 CDL 202 g 1 HETATM 62 O OB7 CDL . . . LA 31 206.417 140.188 129.478 1 49.48 ? OB7 CDL 202 g 1 HETATM 63 C C51 CDL . . . LA 31 204.748 140.502 127.832 1 48.27 ? C51 CDL 202 g 1 HETATM 64 C C52 CDL . . . LA 31 205.187 141.593 126.841 1 49.96 ? C52 CDL 202 g 1 HETATM 65 C C53 CDL . . . LA 31 205.207 141.081 125.392 1 51.86 ? C53 CDL 202 g 1 HETATM 66 C C54 CDL . . . LA 31 206.062 139.806 125.235 1 46.22 ? C54 CDL 202 g 1 HETATM 67 C C55 CDL . . . LA 31 206.932 139.83 123.969 1 48.49 ? C55 CDL 202 g 1 HETATM 68 C C56 CDL . . . LA 31 208.123 138.84 124.066 1 49.87 ? C56 CDL 202 g 1 HETATM 69 C C57 CDL . . . LA 31 208.247 137.941 122.82 1 49.48 ? C57 CDL 202 g 1 HETATM 70 C C58 CDL . . . LA 31 209.716 137.758 122.363 1 47.72 ? C58 CDL 202 g 1 HETATM 71 C C59 CDL . . . LA 31 210.466 139.106 122.22 1 48.1 ? C59 CDL 202 g 1 HETATM 72 C C60 CDL . . . LA 31 211.247 139.195 120.896 1 51.79 ? C60 CDL 202 g 1 HETATM 73 C C61 CDL . . . LA 31 210.317 139.426 119.673 1 53.2 ? C61 CDL 202 g 1 HETATM 74 C C62 CDL . . . LA 31 210.581 138.437 118.516 1 50.48 ? C62 CDL 202 g 1 HETATM 75 C C63 CDL . . . LA 31 212.026 137.915 118.504 1 50.89 ? C63 CDL 202 g 1 HETATM 76 C C64 CDL . . . LA 31 212.428 137.313 117.148 1 52.15 ? C64 CDL 202 g 1 HETATM 77 C C65 CDL . . . LA 31 213.367 138.229 116.373 1 52.29 ? C65 CDL 202 g 1 HETATM 78 C C66 CDL . . . LA 31 214.567 137.479 115.806 1 51.88 ? C66 CDL 202 g 1 HETATM 79 C C67 CDL . . . LA 31 215.764 137.498 116.756 1 47.85 ? C67 CDL 202 g 1 HETATM 80 C CB6 CDL . . . LA 31 203.054 141.197 131.977 1 51.11 ? CB6 CDL 202 g 1 HETATM 81 O OB8 CDL . . . LA 31 202.171 141.532 130.912 1 58.97 ? OB8 CDL 202 g 1 HETATM 82 C CB7 CDL . . . LA 31 200.844 141.789 131.333 1 52.8 ? CB7 CDL 202 g 1 HETATM 83 O OB9 CDL . . . LA 31 200.649 142.362 132.354 1 54.59 ? OB9 CDL 202 g 1 HETATM 84 C C71 CDL . . . LA 31 199.648 141.328 130.468 1 41 ? C71 CDL 202 g 1 HETATM 85 C C72 CDL . . . LA 31 200.076 140.918 129.053 1 45.33 ? C72 CDL 202 g 1 HETATM 86 C C73 CDL . . . LA 31 198.873 140.578 128.16 1 48.24 ? C73 CDL 202 g 1 HETATM 87 C C74 CDL . . . LA 31 198.84 141.431 126.884 1 46.73 ? C74 CDL 202 g 1 HETATM 88 C C75 CDL . . . LA 31 200.119 141.246 126.023 1 50.94 ? C75 CDL 202 g 1 HETATM 89 C C76 CDL . . . LA 31 199.854 141.44 124.507 1 49.45 ? C76 CDL 202 g 1 HETATM 90 C C77 CDL . . . LA 31 198.604 142.324 124.222 1 47.78 ? C77 CDL 202 g 1 HETATM 91 C C78 CDL . . . LA 31 198.991 143.698 123.662 1 47.92 ? C78 CDL 202 g 1 HETATM 92 C C79 CDL . . . LA 31 199.764 143.594 122.331 1 48.8 ? C79 CDL 202 g 1 HETATM 93 C C80 CDL . . . LA 31 200.766 144.763 122.148 1 54.07 ? C80 CDL 202 g 1 HETATM 94 C C81 CDL . . . LA 31 200.075 146.126 122.122 1 50.54 ? C81 CDL 202 g 1 HETATM 95 C C82 CDL . . . LA 31 199.101 146.272 120.918 1 48.7 ? C82 CDL 202 g 1 HETATM 96 C C83 CDL . . . LA 31 199.811 146.04 119.572 1 51.22 ? C83 CDL 202 g 1 HETATM 97 C C84 CDL . . . LA 31 200.922 147.085 119.307 1 51.34 ? C84 CDL 202 g 1 HETATM 98 C C85 CDL . . . LA 31 201.721 146.774 118.027 1 51.49 ? C85 CDL 202 g 1 HETATM 99 C C86 CDL . . . LA 31 201.75 147.959 117.058 1 51.89 ? C86 CDL 202 g 1 HETATM 100 C C87 CDL . . . LA 31 200.396 148.66 116.955 1 48.95 ? C87 CDL 202 g 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 54 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 100 #