data_7VY9 # _model_server_result.job_id DrZ7H4wZOHCH_GOGRzBTUQ _model_server_result.datetime_utc '2024-12-21 15:43:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":202}' # _entry.id 7VY9 # _exptl.entry_id 7VY9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 767.132 _entity.id 33 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 33 JA N N ? 33 KA N N ? 33 NA N N ? 33 OA N N ? 33 XA N N ? 33 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C42 H89 N O8 P 1' _chem_comp.formula_weight 767.132 _chem_comp.id PLX _chem_comp.mon_nstd_flag . _chem_comp.name (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VY9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 31 CDL V 1 202 203 CDL CDL . GA 30 PEE W 1 201 202 PEE PEE . HA 32 8Q1 X 1 201 201 8Q1 8Q1 . IA 31 CDL a 1 201 201 CDL CDL . JA 33 PLX a 1 202 101 PLX PLX . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 30 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 CDL k 1 101 101 CDL CDL . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 712 CDL CDL . SA 31 CDL l 1 703 713 CDL CDL . TA 30 PEE l 1 704 719 PEE PEE . UA 30 PEE l 1 705 720 PEE PEE . VA 31 CDL n 1 101 102 CDL CDL . WA 30 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 205 PLX PLX . YA 33 PLX r 1 503 201 PLX PLX . ZA 30 PEE s 1 401 201 PEE PEE . AB 31 CDL s 1 402 201 CDL CDL . BB 30 PEE s 1 403 401 PEE PEE . CB 34 UQ s 1 404 402 UQ UQ . DB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C23 PLX . . . NA 33 106.765 127.052 136.663 1 66.65 ? C23 PLX 202 j 1 HETATM 2 C C22 PLX . . . NA 33 106.881 127.989 135.423 1 67.38 ? C22 PLX 202 j 1 HETATM 3 C C21 PLX . . . NA 33 105.49 128.295 134.775 1 70.04 ? C21 PLX 202 j 1 HETATM 4 C C20 PLX . . . NA 33 104.567 129.146 135.71 1 70.36 ? C20 PLX 202 j 1 HETATM 5 C C19 PLX . . . NA 33 103.31 129.696 134.953 1 69.3 ? C19 PLX 202 j 1 HETATM 6 C C18 PLX . . . NA 33 102.488 130.729 135.811 1 67.8 ? C18 PLX 202 j 1 HETATM 7 C C17 PLX . . . NA 33 103.309 132.039 136.139 1 68.21 ? C17 PLX 202 j 1 HETATM 8 C C16 PLX . . . NA 33 102.879 132.679 137.505 1 69.57 ? C16 PLX 202 j 1 HETATM 9 C C15 PLX . . . NA 33 103.481 134.121 137.717 1 69.11 ? C15 PLX 202 j 1 HETATM 10 C C14 PLX . . . NA 33 104.453 134.185 138.945 1 67.1 ? C14 PLX 202 j 1 HETATM 11 C C13 PLX . . . NA 33 103.831 134.971 140.161 1 67.02 ? C13 PLX 202 j 1 HETATM 12 C C12 PLX . . . NA 33 102.905 134.057 141.031 1 67.65 ? C12 PLX 202 j 1 HETATM 13 C C11 PLX . . . NA 33 102.873 134.478 142.54 1 66.53 ? C11 PLX 202 j 1 HETATM 14 C C10 PLX . . . NA 33 101.467 134.241 143.18 1 65.45 ? C10 PLX 202 j 1 HETATM 15 C C9 PLX . . . NA 33 100.912 135.505 143.936 1 64.81 ? C9 PLX 202 j 1 HETATM 16 C C8 PLX . . . NA 33 101.319 136.859 143.241 1 67.64 ? C8 PLX 202 j 1 HETATM 17 C C7 PLX . . . NA 33 102.238 137.753 144.163 1 66.22 ? C7 PLX 202 j 1 HETATM 18 C C6 PLX . . . NA 33 102.398 139.198 143.616 1 70.41 ? C6 PLX 202 j 1 HETATM 19 O O7 PLX . . . NA 33 102.895 139.144 142.332 1 69.42 ? O7 PLX 202 j 1 HETATM 20 O O6 PLX . . . NA 33 101.136 139.849 143.614 1 71.19 ? O6 PLX 202 j 1 HETATM 21 C C4 PLX . . . NA 33 101.111 141.119 144.229 1 70.61 ? C4 PLX 202 j 1 HETATM 22 C C3 PLX . . . NA 33 101.562 141.014 145.696 1 66.87 ? C3 PLX 202 j 1 HETATM 23 O O4 PLX . . . NA 33 102.862 141.602 145.824 1 64.6 ? O4 PLX 202 j 1 HETATM 24 P P1 PLX . . . NA 33 103.46 141.915 147.357 1 68.83 ? P1 PLX 202 j 1 HETATM 25 O O1 PLX . . . NA 33 104.032 140.506 148.05 1 67.48 ? O1 PLX 202 j 1 HETATM 26 C C2 PLX . . . NA 33 103.162 139.75 148.897 1 67.16 ? C2 PLX 202 j 1 HETATM 27 C C1 PLX . . . NA 33 102.627 138.511 148.101 1 62.59 ? C1 PLX 202 j 1 HETATM 28 N N1 PLX . . . NA 33 101.857 137.599 149.013 1 59.05 ? N1 PLX 202 j 1 HETATM 29 C C1C PLX . . . NA 33 100.709 138.375 149.522 1 65.46 ? C1C PLX 202 j 1 HETATM 30 C C1B PLX . . . NA 33 101.387 136.452 148.182 1 63.63 ? C1B PLX 202 j 1 HETATM 31 C C1A PLX . . . NA 33 102.536 137.022 150.199 1 61.99 ? C1A PLX 202 j 1 HETATM 32 O O2 PLX . . . NA 33 102.37 142.499 148.228 1 66.4 ? O2 PLX 202 j 1 HETATM 33 C C5 PLX . . . NA 33 102.029 142.098 143.469 1 67.56 ? C5 PLX 202 j 1 HETATM 34 O O8 PLX . . . NA 33 101.283 143.287 143.202 1 72.91 ? O8 PLX 202 j 1 HETATM 35 C C24 PLX . . . NA 33 101.836 144.462 143.759 1 71.61 ? C24 PLX 202 j 1 HETATM 36 O O9 PLX . . . NA 33 102.55 144.146 144.907 1 71.76 ? O9 PLX 202 j 1 HETATM 37 C C25 PLX . . . NA 33 100.698 145.443 144.115 1 68.39 ? C25 PLX 202 j 1 HETATM 38 C C26 PLX . . . NA 33 99.757 145.724 142.899 1 65.68 ? C26 PLX 202 j 1 HETATM 39 C C27 PLX . . . NA 33 99.915 147.178 142.352 1 66.21 ? C27 PLX 202 j 1 HETATM 40 C C28 PLX . . . NA 33 100.496 147.208 140.897 1 68.83 ? C28 PLX 202 j 1 HETATM 41 C C29 PLX . . . NA 33 99.447 146.772 139.821 1 70.03 ? C29 PLX 202 j 1 HETATM 42 C C30 PLX . . . NA 33 99.955 145.551 138.963 1 69.06 ? C30 PLX 202 j 1 HETATM 43 C C31 PLX . . . NA 33 100.6 146.004 137.598 1 68.99 ? C31 PLX 202 j 1 HETATM 44 C C32 PLX . . . NA 33 99.613 145.837 136.376 1 67.72 ? C32 PLX 202 j 1 HETATM 45 C C33 PLX . . . NA 33 98.673 147.095 136.181 1 70.25 ? C33 PLX 202 j 1 HETATM 46 C C34 PLX . . . NA 33 97.229 146.857 136.78 1 67.57 ? C34 PLX 202 j 1 HETATM 47 C C35 PLX . . . NA 33 96.499 145.624 136.1 1 68.58 ? C35 PLX 202 j 1 HETATM 48 C C36 PLX . . . NA 33 95.962 144.594 137.155 1 70.05 ? C36 PLX 202 j 1 HETATM 49 C C37 PLX . . . NA 33 95.642 143.191 136.521 1 66.77 ? C37 PLX 202 j 1 HETATM 50 C C38 PLX . . . NA 33 94.604 143.282 135.356 1 67.86 ? C38 PLX 202 j 1 HETATM 51 C C39 PLX . . . NA 33 95.224 142.923 133.981 1 66.54 ? C39 PLX 202 j 1 HETATM 52 O O3 PLX . . . NA 33 104.597 142.91 147.252 1 70.06 ? O3 PLX 202 j 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 128 _model_server_stats.query_time_ms 837 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 52 #