data_7VY9
#
_model_server_result.job_id            A8kskw2XxaIoWDwL5FjgIg 
_model_server_result.datetime_utc      '2024-12-21 16:12:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"OA","auth_seq_id":203}' 
#
_entry.id    7VY9 
#
_exptl.entry_id    7VY9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.132 
_entity.id                          33 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 33 JA N N 
? 33 KA N N 
? 33 NA N N 
? 33 OA N N 
? 33 XA N N 
? 33 YA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C42 H89 N O8 P 1' 
_chem_comp.formula_weight    767.132 
_chem_comp.id                PLX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7VY9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE Q 1 101 718 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 31 CDL V 1 202 203 CDL CDL . 
GA 30 PEE W 1 201 202 PEE PEE . 
HA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
IA 31 CDL a 1 201 201 CDL CDL . 
JA 33 PLX a 1 202 101 PLX PLX . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 30 PEE j 1 201 101 PEE PEE . 
NA 33 PLX j 1 202 202 PLX PLX . 
OA 33 PLX j 1 203 203 PLX PLX . 
PA 31 CDL k 1 101 101 CDL CDL . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 712 CDL CDL . 
SA 31 CDL l 1 703 713 CDL CDL . 
TA 30 PEE l 1 704 719 PEE PEE . 
UA 30 PEE l 1 705 720 PEE PEE . 
VA 31 CDL n 1 101 102 CDL CDL . 
WA 30 PEE r 1 501 202 PEE PEE . 
XA 33 PLX r 1 502 205 PLX PLX . 
YA 33 PLX r 1 503 201 PLX PLX . 
ZA 30 PEE s 1 401 201 PEE PEE . 
AB 31 CDL s 1 402 201 CDL CDL . 
BB 30 PEE s 1 403 401 PEE PEE . 
CB 34 UQ s 1 404 402 UQ UQ . 
DB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 PLX . . . OA 33 169.744 115.95 111.417 1 57.78 ? C23 PLX 203 j 1 
HETATM 2 C C22 PLX . . . OA 33 170.339 116.377 112.793 1 59.01 ? C22 PLX 203 j 1 
HETATM 3 C C21 PLX . . . OA 33 169.226 116.683 113.849 1 63.81 ? C21 PLX 203 j 1 
HETATM 4 C C20 PLX . . . OA 33 169.808 117.288 115.17 1 62.62 ? C20 PLX 203 j 1 
HETATM 5 C C19 PLX . . . OA 33 168.723 118.05 116.003 1 62.6 ? C19 PLX 203 j 1 
HETATM 6 C C18 PLX . . . OA 33 167.83 117.077 116.859 1 63.66 ? C18 PLX 203 j 1 
HETATM 7 C C17 PLX . . . OA 33 166.617 117.822 117.547 1 59.22 ? C17 PLX 203 j 1 
HETATM 8 C C16 PLX . . . OA 33 165.259 117.544 116.816 1 60.64 ? C16 PLX 203 j 1 
HETATM 9 C C15 PLX . . . OA 33 164.746 116.072 117.048 1 59.75 ? C15 PLX 203 j 1 
HETATM 10 C C14 PLX . . . OA 33 164.77 115.206 115.743 1 62.05 ? C14 PLX 203 j 1 
HETATM 11 C C13 PLX . . . OA 33 164.543 116.062 114.44 1 61.99 ? C13 PLX 203 j 1 
HETATM 12 C C12 PLX . . . OA 33 163.025 116.24 114.099 1 60.05 ? C12 PLX 203 j 1 
HETATM 13 C C11 PLX . . . OA 33 162.739 116.095 112.566 1 59.63 ? C11 PLX 203 j 1 
HETATM 14 C C10 PLX . . . OA 33 161.337 115.467 112.283 1 57.93 ? C10 PLX 203 j 1 
HETATM 15 C C9 PLX . . . OA 33 160.518 116.281 111.216 1 59.95 ? C9 PLX 203 j 1 
HETATM 16 C C8 PLX . . . OA 33 159.214 115.522 110.764 1 60.02 ? C8 PLX 203 j 1 
HETATM 17 C C7 PLX . . . OA 33 159.169 115.221 109.213 1 60.99 ? C7 PLX 203 j 1 
HETATM 18 C C6 PLX . . . OA 33 159.94 113.93 108.816 1 65.24 ? C6 PLX 203 j 1 
HETATM 19 O O7 PLX . . . OA 33 160.541 113.379 109.927 1 67.57 ? O7 PLX 203 j 1 
HETATM 20 O O6 PLX . . . OA 33 159.05 112.988 108.231 1 62.04 ? O6 PLX 203 j 1 
HETATM 21 C C4 PLX . . . OA 33 158.023 112.529 109.076 1 58.82 ? C4 PLX 203 j 1 
HETATM 22 C C3 PLX . . . OA 33 156.708 112.464 108.285 1 60.56 ? C3 PLX 203 j 1 
HETATM 23 O O4 PLX . . . OA 33 156.946 111.695 107.102 1 66.52 ? O4 PLX 203 j 1 
HETATM 24 P P1 PLX . . . OA 33 155.635 111.05 106.283 1 81.76 ? P1 PLX 203 j 1 
HETATM 25 O O1 PLX . . . OA 33 155.053 112.17 105.189 1 69.89 ? O1 PLX 203 j 1 
HETATM 26 C C2 PLX . . . OA 33 154.073 113.117 105.625 1 61.01 ? C2 PLX 203 j 1 
HETATM 27 C C1 PLX . . . OA 33 153.593 113.94 104.379 1 57.25 ? C1 PLX 203 j 1 
HETATM 28 N N1 PLX . . . OA 33 152.399 113.298 103.73 1 65.96 ? N1 PLX 203 j 1 
HETATM 29 C C1C PLX . . . OA 33 151.23 113.622 104.574 1 57.95 ? C1C PLX 203 j 1 
HETATM 30 C C1B PLX . . . OA 33 152.267 113.922 102.379 1 64.63 ? C1B PLX 203 j 1 
HETATM 31 C C1A PLX . . . OA 33 152.375 111.828 103.516 1 58.04 ? C1A PLX 203 j 1 
HETATM 32 O O2 PLX . . . OA 33 154.544 110.687 107.266 1 65.43 ? O2 PLX 203 j 1 
HETATM 33 C C5 PLX . . . OA 33 158.363 111.119 109.594 1 58.62 ? C5 PLX 203 j 1 
HETATM 34 O O8 PLX . . . OA 33 157.606 110.885 110.783 1 61.53 ? O8 PLX 203 j 1 
HETATM 35 C C24 PLX . . . OA 33 158.355 110.345 111.85 1 63.44 ? C24 PLX 203 j 1 
HETATM 36 O O9 PLX . . . OA 33 157.493 110.018 112.888 1 59.89 ? O9 PLX 203 j 1 
HETATM 37 C C25 PLX . . . OA 33 159.391 111.385 112.33 1 61.98 ? C25 PLX 203 j 1 
HETATM 38 C C26 PLX . . . OA 33 159.414 111.554 113.884 1 56.15 ? C26 PLX 203 j 1 
HETATM 39 C C27 PLX . . . OA 33 160.137 110.375 114.61 1 56.76 ? C27 PLX 203 j 1 
HETATM 40 C C28 PLX . . . OA 33 160.91 110.849 115.887 1 61.2 ? C28 PLX 203 j 1 
HETATM 41 C C29 PLX . . . OA 33 160.015 110.83 117.169 1 57.44 ? C29 PLX 203 j 1 
HETATM 42 C C30 PLX . . . OA 33 160.067 112.199 117.947 1 57.64 ? C30 PLX 203 j 1 
HETATM 43 C C31 PLX . . . OA 33 161.356 112.321 118.843 1 58.71 ? C31 PLX 203 j 1 
HETATM 44 C C32 PLX . . . OA 33 162.214 113.597 118.478 1 59.69 ? C32 PLX 203 j 1 
HETATM 45 C C33 PLX . . . OA 33 163.141 114.068 119.669 1 60.87 ? C33 PLX 203 j 1 
HETATM 46 C C34 PLX . . . OA 33 162.712 115.474 120.249 1 60.41 ? C34 PLX 203 j 1 
HETATM 47 C C35 PLX . . . OA 33 161.309 115.418 120.986 1 59.5 ? C35 PLX 203 j 1 
HETATM 48 C C36 PLX . . . OA 33 161.39 115.95 122.461 1 56.39 ? C36 PLX 203 j 1 
HETATM 49 C C37 PLX . . . OA 33 161.046 114.831 123.509 1 62.2 ? C37 PLX 203 j 1 
HETATM 50 C C38 PLX . . . OA 33 162.07 113.651 123.468 1 61.38 ? C38 PLX 203 j 1 
HETATM 51 C C39 PLX . . . OA 33 161.423 112.292 123.838 1 56.79 ? C39 PLX 203 j 1 
HETATM 52 O O3 PLX . . . OA 33 156.072 109.804 105.539 1 60.07 ? O3 PLX 203 j 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    393 
_model_server_stats.query_time_ms           399 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           52 
#