data_7VY9 # _model_server_result.job_id vbZJ5DQqa79HMzMqDV2QHg _model_server_result.datetime_utc '2024-11-14 17:41:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"ZA","auth_seq_id":401}' # _entry.id 7VY9 # _exptl.entry_id 7VY9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 GA N N ? 30 MA N N ? 30 QA N N ? 30 TA N N ? 30 UA N N ? 30 WA N N ? 30 ZA N N ? 30 BB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 7VY9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 31 CDL V 1 202 203 CDL CDL . GA 30 PEE W 1 201 202 PEE PEE . HA 32 8Q1 X 1 201 201 8Q1 8Q1 . IA 31 CDL a 1 201 201 CDL CDL . JA 33 PLX a 1 202 101 PLX PLX . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 30 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 CDL k 1 101 101 CDL CDL . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 712 CDL CDL . SA 31 CDL l 1 703 713 CDL CDL . TA 30 PEE l 1 704 719 PEE PEE . UA 30 PEE l 1 705 720 PEE PEE . VA 31 CDL n 1 101 102 CDL CDL . WA 30 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 205 PLX PLX . YA 33 PLX r 1 503 201 PLX PLX . ZA 30 PEE s 1 401 201 PEE PEE . AB 31 CDL s 1 402 201 CDL CDL . BB 30 PEE s 1 403 401 PEE PEE . CB 34 UQ s 1 404 402 UQ UQ . DB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . ZA 30 123.071 129.414 129.972 1 49.01 ? C27 PEE 401 s 1 HETATM 2 C C26 PEE . . . ZA 30 123.169 130.588 130.947 1 52.16 ? C26 PEE 401 s 1 HETATM 3 C C25 PEE . . . ZA 30 121.99 130.638 131.912 1 54.37 ? C25 PEE 401 s 1 HETATM 4 C C24 PEE . . . ZA 30 122.412 131.032 133.326 1 51.03 ? C24 PEE 401 s 1 HETATM 5 C C23 PEE . . . ZA 30 122.345 132.541 133.557 1 49.89 ? C23 PEE 401 s 1 HETATM 6 C C22 PEE . . . ZA 30 120.913 133.042 133.734 1 54.22 ? C22 PEE 401 s 1 HETATM 7 C C21 PEE . . . ZA 30 120.847 134.57 133.806 1 56.09 ? C21 PEE 401 s 1 HETATM 8 C C20 PEE . . . ZA 30 119.416 135.1 133.701 1 52.27 ? C20 PEE 401 s 1 HETATM 9 C C19 PEE . . . ZA 30 118.828 135.463 135.065 1 52.54 ? C19 PEE 401 s 1 HETATM 10 C C18 PEE . . . ZA 30 117.629 136.402 134.94 1 52.68 ? C18 PEE 401 s 1 HETATM 11 C C17 PEE . . . ZA 30 116.811 136.482 136.23 1 52.01 ? C17 PEE 401 s 1 HETATM 12 C C16 PEE . . . ZA 30 115.518 137.276 136.038 1 52.76 ? C16 PEE 401 s 1 HETATM 13 C C15 PEE . . . ZA 30 114.342 136.672 136.806 1 50.25 ? C15 PEE 401 s 1 HETATM 14 C C14 PEE . . . ZA 30 114.006 137.461 138.074 1 53.74 ? C14 PEE 401 s 1 HETATM 15 C C13 PEE . . . ZA 30 114.915 137.085 139.249 1 51.53 ? C13 PEE 401 s 1 HETATM 16 C C12 PEE . . . ZA 30 114.127 136.931 140.554 1 50.48 ? C12 PEE 401 s 1 HETATM 17 C C11 PEE . . . ZA 30 114.728 137.745 141.704 1 52.63 ? C11 PEE 401 s 1 HETATM 18 C C10 PEE . . . ZA 30 113.698 137.964 142.817 1 53.85 ? C10 PEE 401 s 1 HETATM 19 O O4 PEE . . . ZA 30 112.71 137.315 142.831 1 57.06 ? O4 PEE 401 s 1 HETATM 20 O O2 PEE . . . ZA 30 113.911 138.932 143.806 1 51.61 ? O2 PEE 401 s 1 HETATM 21 C C2 PEE . . . ZA 30 112.898 139.899 143.838 1 54.85 ? C2 PEE 401 s 1 HETATM 22 C C1 PEE . . . ZA 30 111.947 139.615 145.001 1 57.44 ? C1 PEE 401 s 1 HETATM 23 O O3P PEE . . . ZA 30 112.52 140.093 146.189 1 55.32 ? O3P PEE 401 s 1 HETATM 24 P P PEE . . . ZA 30 111.58 141.026 147.176 1 64.9 ? P PEE 401 s 1 HETATM 25 O O2P PEE . . . ZA 30 111.586 142.449 146.671 1 59.43 ? O2P PEE 401 s 1 HETATM 26 O O1P PEE . . . ZA 30 112.127 140.992 148.58 1 55.48 ? O1P PEE 401 s 1 HETATM 27 O O4P PEE . . . ZA 30 110.032 140.45 147.183 1 54.25 ? O4P PEE 401 s 1 HETATM 28 C C4 PEE . . . ZA 30 108.979 141.378 147.166 1 51.56 ? C4 PEE 401 s 1 HETATM 29 C C5 PEE . . . ZA 30 107.657 140.612 147.231 1 49.55 ? C5 PEE 401 s 1 HETATM 30 N N PEE . . . ZA 30 107.407 140.158 148.587 1 52.39 ? N PEE 401 s 1 HETATM 31 C C3 PEE . . . ZA 30 113.514 141.289 143.979 1 54.94 ? C3 PEE 401 s 1 HETATM 32 O O3 PEE . . . ZA 30 112.984 142.097 142.966 1 61.06 ? O3 PEE 401 s 1 HETATM 33 C C30 PEE . . . ZA 30 113.632 141.972 141.729 1 57.69 ? C30 PEE 401 s 1 HETATM 34 O O5 PEE . . . ZA 30 114.772 142.274 141.623 1 56.64 ? O5 PEE 401 s 1 HETATM 35 C C31 PEE . . . ZA 30 112.867 141.443 140.513 1 54.16 ? C31 PEE 401 s 1 HETATM 36 C C32 PEE . . . ZA 30 111.444 142.001 140.442 1 56.76 ? C32 PEE 401 s 1 HETATM 37 C C33 PEE . . . ZA 30 110.551 141.213 139.48 1 54.35 ? C33 PEE 401 s 1 HETATM 38 C C34 PEE . . . ZA 30 109.077 141.608 139.612 1 55.45 ? C34 PEE 401 s 1 HETATM 39 C C35 PEE . . . ZA 30 108.136 140.566 138.997 1 56.25 ? C35 PEE 401 s 1 HETATM 40 C C36 PEE . . . ZA 30 106.731 140.625 139.604 1 54.71 ? C36 PEE 401 s 1 HETATM 41 C C37 PEE . . . ZA 30 106.02 139.271 139.555 1 51.45 ? C37 PEE 401 s 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 41 #