data_7VY9
#
_model_server_result.job_id            nWw9SLCWfYLiETzHto6OBQ 
_model_server_result.datetime_utc      '2024-12-21 16:04:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AB","auth_seq_id":402}' 
#
_entry.id    7VY9 
#
_exptl.entry_id    7VY9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 31 EA N N 
? 31 FA N N 
? 31 IA N N 
? 31 LA N N 
? 31 PA N N 
? 31 RA N N 
? 31 SA N N 
? 31 VA N N 
? 31 AB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VY9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE Q 1 101 718 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 31 CDL V 1 202 203 CDL CDL . 
GA 30 PEE W 1 201 202 PEE PEE . 
HA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
IA 31 CDL a 1 201 201 CDL CDL . 
JA 33 PLX a 1 202 101 PLX PLX . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 30 PEE j 1 201 101 PEE PEE . 
NA 33 PLX j 1 202 202 PLX PLX . 
OA 33 PLX j 1 203 203 PLX PLX . 
PA 31 CDL k 1 101 101 CDL CDL . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 712 CDL CDL . 
SA 31 CDL l 1 703 713 CDL CDL . 
TA 30 PEE l 1 704 719 PEE PEE . 
UA 30 PEE l 1 705 720 PEE PEE . 
VA 31 CDL n 1 101 102 CDL CDL . 
WA 30 PEE r 1 501 202 PEE PEE . 
XA 33 PLX r 1 502 205 PLX PLX . 
YA 33 PLX r 1 503 201 PLX PLX . 
ZA 30 PEE s 1 401 201 PEE PEE . 
AB 31 CDL s 1 402 201 CDL CDL . 
BB 30 PEE s 1 403 401 PEE PEE . 
CB 34 UQ s 1 404 402 UQ UQ . 
DB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . AB 31 124.438 146.233 145.984 1 58.12 ? C1 CDL 402 s 1 
HETATM 2 O O1 CDL . . . AB 31 123.977 147.23 145.121 1 56.88 ? O1 CDL 402 s 1 
HETATM 3 C CA2 CDL . . . AB 31 123.215 145.407 146.463 1 54.56 ? CA2 CDL 402 s 1 
HETATM 4 O OA2 CDL . . . AB 31 122.066 145.845 145.752 1 53.86 ? OA2 CDL 402 s 1 
HETATM 5 P PA1 CDL . . . AB 31 120.577 145.625 146.446 1 64.85 ? PA1 CDL 402 s 1 
HETATM 6 O OA3 CDL . . . AB 31 120.706 144.712 147.639 1 53.07 ? OA3 CDL 402 s 1 
HETATM 7 O OA4 CDL . . . AB 31 120.03 146.949 146.885 1 54.3 ? OA4 CDL 402 s 1 
HETATM 8 O OA5 CDL . . . AB 31 119.551 144.935 145.337 1 58.73 ? OA5 CDL 402 s 1 
HETATM 9 C CA3 CDL . . . AB 31 119.235 145.675 144.169 1 51.19 ? CA3 CDL 402 s 1 
HETATM 10 C CA4 CDL . . . AB 31 118.702 144.717 143.114 1 55.28 ? CA4 CDL 402 s 1 
HETATM 11 O OA6 CDL . . . AB 31 118.831 143.392 143.555 1 56.24 ? OA6 CDL 402 s 1 
HETATM 12 C CA5 CDL . . . AB 31 117.612 142.66 143.521 1 56.34 ? CA5 CDL 402 s 1 
HETATM 13 O OA7 CDL . . . AB 31 116.571 143.234 143.61 1 57.7 ? OA7 CDL 402 s 1 
HETATM 14 C C11 CDL . . . AB 31 117.631 141.107 143.366 1 51.77 ? C11 CDL 402 s 1 
HETATM 15 C C12 CDL . . . AB 31 117.562 140.654 141.902 1 51.67 ? C12 CDL 402 s 1 
HETATM 16 C C13 CDL . . . AB 31 118.61 141.34 141.031 1 50.93 ? C13 CDL 402 s 1 
HETATM 17 C C14 CDL . . . AB 31 119.616 140.345 140.421 1 53.44 ? C14 CDL 402 s 1 
HETATM 18 C C15 CDL . . . AB 31 118.924 139.088 139.82 1 50.25 ? C15 CDL 402 s 1 
HETATM 19 C C16 CDL . . . AB 31 119.804 138.369 138.766 1 53.18 ? C16 CDL 402 s 1 
HETATM 20 C C17 CDL . . . AB 31 120.659 139.363 137.923 1 52.36 ? C17 CDL 402 s 1 
HETATM 21 C C18 CDL . . . AB 31 119.852 139.988 136.756 1 53.8 ? C18 CDL 402 s 1 
HETATM 22 C C19 CDL . . . AB 31 120.029 139.221 135.415 1 57.1 ? C19 CDL 402 s 1 
HETATM 23 C C20 CDL . . . AB 31 121.017 139.934 134.458 1 57.78 ? C20 CDL 402 s 1 
HETATM 24 C C21 CDL . . . AB 31 120.711 139.646 132.964 1 56.9 ? C21 CDL 402 s 1 
HETATM 25 C C22 CDL . . . AB 31 121.127 138.21 132.537 1 57.65 ? C22 CDL 402 s 1 
HETATM 26 C C23 CDL . . . AB 31 120.656 137.862 131.106 1 51.96 ? C23 CDL 402 s 1 
HETATM 27 C CA6 CDL . . . AB 31 119.493 144.9 141.804 1 54.1 ? CA6 CDL 402 s 1 
HETATM 28 O OA8 CDL . . . AB 31 120.778 144.335 141.969 1 53.98 ? OA8 CDL 402 s 1 
HETATM 29 C CA7 CDL . . . AB 31 121.563 144.326 140.773 1 57.34 ? CA7 CDL 402 s 1 
HETATM 30 O OA9 CDL . . . AB 31 122.716 144.579 140.821 1 61.31 ? OA9 CDL 402 s 1 
HETATM 31 C C31 CDL . . . AB 31 120.91 143.984 139.421 1 52.47 ? C31 CDL 402 s 1 
HETATM 32 C C32 CDL . . . AB 31 121.904 143.368 138.439 1 50.1 ? C32 CDL 402 s 1 
HETATM 33 C C33 CDL . . . AB 31 121.342 143.292 137.012 1 52.95 ? C33 CDL 402 s 1 
HETATM 34 C C34 CDL . . . AB 31 120.605 144.588 136.598 1 57.94 ? C34 CDL 402 s 1 
HETATM 35 C C35 CDL . . . AB 31 120.711 144.875 135.076 1 54.63 ? C35 CDL 402 s 1 
HETATM 36 C C36 CDL . . . AB 31 122.069 144.436 134.479 1 54.03 ? C36 CDL 402 s 1 
HETATM 37 C C37 CDL . . . AB 31 121.949 144.033 133 1 55.57 ? C37 CDL 402 s 1 
HETATM 38 C C38 CDL . . . AB 31 122.736 142.756 132.678 1 54.68 ? C38 CDL 402 s 1 
HETATM 39 C C39 CDL . . . AB 31 124.09 143.028 131.992 1 54.04 ? C39 CDL 402 s 1 
HETATM 40 C C40 CDL . . . AB 31 124.232 144.479 131.478 1 55.76 ? C40 CDL 402 s 1 
HETATM 41 C C41 CDL . . . AB 31 125.215 144.59 130.262 1 54.01 ? C41 CDL 402 s 1 
HETATM 42 C C42 CDL . . . AB 31 125.688 146.049 130.023 1 52.63 ? C42 CDL 402 s 1 
HETATM 43 C C43 CDL . . . AB 31 124.527 147.077 130.149 1 51.02 ? C43 CDL 402 s 1 
HETATM 44 C CB2 CDL . . . AB 31 125.471 145.355 145.198 1 55.72 ? CB2 CDL 402 s 1 
HETATM 45 O OB2 CDL . . . AB 31 124.776 144.227 144.683 1 60.33 ? OB2 CDL 402 s 1 
HETATM 46 P PB2 CDL . . . AB 31 125.643 143.054 143.854 1 61.72 ? PB2 CDL 402 s 1 
HETATM 47 O OB3 CDL . . . AB 31 127.03 142.93 144.458 1 49.68 ? OB3 CDL 402 s 1 
HETATM 48 O OB4 CDL . . . AB 31 124.927 141.73 143.952 1 54.38 ? OB4 CDL 402 s 1 
HETATM 49 O OB5 CDL . . . AB 31 125.772 143.487 142.242 1 49.03 ? OB5 CDL 402 s 1 
HETATM 50 C CB3 CDL . . . AB 31 126.438 142.585 141.37 1 54.11 ? CB3 CDL 402 s 1 
HETATM 51 C CB4 CDL . . . AB 31 125.935 142.83 139.942 1 51.48 ? CB4 CDL 402 s 1 
HETATM 52 O OB6 CDL . . . AB 31 126.793 142.187 139.03 1 45.84 ? OB6 CDL 402 s 1 
HETATM 53 C CB5 CDL . . . AB 31 126.121 141.347 138.098 1 50.61 ? CB5 CDL 402 s 1 
HETATM 54 O OB7 CDL . . . AB 31 124.937 141.29 138.098 1 50.65 ? OB7 CDL 402 s 1 
HETATM 55 C C51 CDL . . . AB 31 126.927 140.508 137.087 1 51.54 ? C51 CDL 402 s 1 
HETATM 56 C C52 CDL . . . AB 31 126.139 139.279 136.602 1 51.67 ? C52 CDL 402 s 1 
HETATM 57 C C53 CDL . . . AB 31 125.394 139.54 135.284 1 54.15 ? C53 CDL 402 s 1 
HETATM 58 C C54 CDL . . . AB 31 125.882 138.623 134.143 1 52.13 ? C54 CDL 402 s 1 
HETATM 59 C C55 CDL . . . AB 31 124.841 137.558 133.767 1 53.18 ? C55 CDL 402 s 1 
HETATM 60 C C56 CDL . . . AB 31 125.404 136.512 132.768 1 54.63 ? C56 CDL 402 s 1 
HETATM 61 C C57 CDL . . . AB 31 125.09 135.063 133.196 1 52.76 ? C57 CDL 402 s 1 
HETATM 62 C C58 CDL . . . AB 31 126.348 134.16 133.164 1 54.32 ? C58 CDL 402 s 1 
HETATM 63 C C59 CDL . . . AB 31 125.993 132.653 133.134 1 52.58 ? C59 CDL 402 s 1 
HETATM 64 C C60 CDL . . . AB 31 127.109 131.799 132.505 1 51.07 ? C60 CDL 402 s 1 
HETATM 65 C C61 CDL . . . AB 31 127.333 132.128 131.004 1 47.72 ? C61 CDL 402 s 1 
HETATM 66 C C62 CDL . . . AB 31 127.365 130.859 130.126 1 51.24 ? C62 CDL 402 s 1 
HETATM 67 C C63 CDL . . . AB 31 128.051 131.095 128.773 1 53.15 ? C63 CDL 402 s 1 
HETATM 68 C C64 CDL . . . AB 31 127.19 131.94 127.821 1 53.02 ? C64 CDL 402 s 1 
HETATM 69 C CB6 CDL . . . AB 31 125.917 144.328 139.666 1 48.5 ? CB6 CDL 402 s 1 
HETATM 70 O OB8 CDL . . . AB 31 126.406 144.534 138.346 1 55.77 ? OB8 CDL 402 s 1 
HETATM 71 C CB7 CDL . . . AB 31 126.756 145.876 138.072 1 50.85 ? CB7 CDL 402 s 1 
HETATM 72 O OB9 CDL . . . AB 31 127.558 146.426 138.751 1 50.43 ? OB9 CDL 402 s 1 
HETATM 73 C C71 CDL . . . AB 31 126.097 146.617 136.886 1 49.38 ? C71 CDL 402 s 1 
HETATM 74 C C72 CDL . . . AB 31 125.504 145.639 135.864 1 54.38 ? C72 CDL 402 s 1 
HETATM 75 C C73 CDL . . . AB 31 126.395 145.491 134.62 1 54.6 ? C73 CDL 402 s 1 
HETATM 76 C C74 CDL . . . AB 31 126.864 144.043 134.409 1 47.63 ? C74 CDL 402 s 1 
HETATM 77 C C75 CDL . . . AB 31 127.522 143.844 133.017 1 51.22 ? C75 CDL 402 s 1 
HETATM 78 C C76 CDL . . . AB 31 129.005 143.407 133.115 1 54.16 ? C76 CDL 402 s 1 
HETATM 79 C C77 CDL . . . AB 31 129.442 142.554 131.888 1 48.54 ? C77 CDL 402 s 1 
HETATM 80 C C78 CDL . . . AB 31 129.69 141.087 132.261 1 50.23 ? C78 CDL 402 s 1 
HETATM 81 C C79 CDL . . . AB 31 129.933 140.206 131.019 1 49.81 ? C79 CDL 402 s 1 
HETATM 82 C C80 CDL . . . AB 31 128.806 140.364 129.965 1 53.37 ? C80 CDL 402 s 1 
HETATM 83 C C81 CDL . . . AB 31 127.49 139.732 130.418 1 55.58 ? C81 CDL 402 s 1 
HETATM 84 C C82 CDL . . . AB 31 126.435 139.677 129.275 1 51.34 ? C82 CDL 402 s 1 
HETATM 85 C C83 CDL . . . AB 31 125.742 141.034 129.042 1 49.77 ? C83 CDL 402 s 1 
HETATM 86 C C84 CDL . . . AB 31 124.726 140.975 127.875 1 53.47 ? C84 CDL 402 s 1 
HETATM 87 C C85 CDL . . . AB 31 124.337 142.374 127.36 1 54.58 ? C85 CDL 402 s 1 
HETATM 88 C C86 CDL . . . AB 31 123.733 142.326 125.955 1 54.42 ? C86 CDL 402 s 1 
HETATM 89 C C87 CDL . . . AB 31 122.3 141.794 125.954 1 52.35 ? C87 CDL 402 s 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    98 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           89 
#