data_7VY9
#
_model_server_result.job_id            WaJLvefstpV4ifqlQa2Xew 
_model_server_result.datetime_utc      '2024-12-21 15:42:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"BB","auth_seq_id":403}' 
#
_entry.id    7VY9 
#
_exptl.entry_id    7VY9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          30 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 30 DA N N 
? 30 GA N N 
? 30 MA N N 
? 30 QA N N 
? 30 TA N N 
? 30 UA N N 
? 30 WA N N 
? 30 ZA N N 
? 30 BB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
_atom_sites.entry_id                     7VY9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE Q 1 101 718 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 31 CDL V 1 202 203 CDL CDL . 
GA 30 PEE W 1 201 202 PEE PEE . 
HA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
IA 31 CDL a 1 201 201 CDL CDL . 
JA 33 PLX a 1 202 101 PLX PLX . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 30 PEE j 1 201 101 PEE PEE . 
NA 33 PLX j 1 202 202 PLX PLX . 
OA 33 PLX j 1 203 203 PLX PLX . 
PA 31 CDL k 1 101 101 CDL CDL . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 712 CDL CDL . 
SA 31 CDL l 1 703 713 CDL CDL . 
TA 30 PEE l 1 704 719 PEE PEE . 
UA 30 PEE l 1 705 720 PEE PEE . 
VA 31 CDL n 1 101 102 CDL CDL . 
WA 30 PEE r 1 501 202 PEE PEE . 
XA 33 PLX r 1 502 205 PLX PLX . 
YA 33 PLX r 1 503 201 PLX PLX . 
ZA 30 PEE s 1 401 201 PEE PEE . 
AB 31 CDL s 1 402 201 CDL CDL . 
BB 30 PEE s 1 403 401 PEE PEE . 
CB 34 UQ s 1 404 402 UQ UQ . 
DB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 PEE . . . BB 30 145.003 91.508 127.467 1 38.79 ? C27 PEE 403 s 1 
HETATM 2 C C26 PEE . . . BB 30 145.53 92.899 127.82 1 36.97 ? C26 PEE 403 s 1 
HETATM 3 C C25 PEE . . . BB 30 144.589 94.005 127.356 1 40.05 ? C25 PEE 403 s 1 
HETATM 4 C C24 PEE . . . BB 30 144.86 95.335 128.056 1 37.82 ? C24 PEE 403 s 1 
HETATM 5 C C23 PEE . . . BB 30 145.171 95.15 129.539 1 37.23 ? C23 PEE 403 s 1 
HETATM 6 C C22 PEE . . . BB 30 143.92 95.231 130.409 1 38.41 ? C22 PEE 403 s 1 
HETATM 7 C C21 PEE . . . BB 30 144.005 94.308 131.628 1 38.32 ? C21 PEE 403 s 1 
HETATM 8 C C20 PEE . . . BB 30 143.555 95.006 132.911 1 38.31 ? C20 PEE 403 s 1 
HETATM 9 C C19 PEE . . . BB 30 144.162 94.368 134.161 1 39.11 ? C19 PEE 403 s 1 
HETATM 10 C C18 PEE . . . BB 30 144.191 95.34 135.34 1 35.9 ? C18 PEE 403 s 1 
HETATM 11 C C17 PEE . . . BB 30 142.843 96.028 135.553 1 35.99 ? C17 PEE 403 s 1 
HETATM 12 C C16 PEE . . . BB 30 142.967 97.25 136.461 1 37 ? C16 PEE 403 s 1 
HETATM 13 C C15 PEE . . . BB 30 141.694 98.097 136.494 1 24.25 ? C15 PEE 403 s 1 
HETATM 14 C C14 PEE . . . BB 30 141.493 98.735 137.872 1 34.24 ? C14 PEE 403 s 1 
HETATM 15 C C13 PEE . . . BB 30 140.918 100.153 137.798 1 39.19 ? C13 PEE 403 s 1 
HETATM 16 C C12 PEE . . . BB 30 141.501 101.06 138.89 1 24.61 ? C12 PEE 403 s 1 
HETATM 17 C C11 PEE . . . BB 30 140.996 100.687 140.288 1 32.44 ? C11 PEE 403 s 1 
HETATM 18 C C10 PEE . . . BB 30 142.038 100.973 141.378 1 39.29 ? C10 PEE 403 s 1 
HETATM 19 O O4 PEE . . . BB 30 143.037 100.34 141.412 1 41.62 ? O4 PEE 403 s 1 
HETATM 20 O O2 PEE . . . BB 30 141.809 101.981 142.327 1 37.29 ? O2 PEE 403 s 1 
HETATM 21 C C2 PEE . . . BB 30 141.857 101.544 143.658 1 38.13 ? C2 PEE 403 s 1 
HETATM 22 C C1 PEE . . . BB 30 143.266 101.76 144.211 1 34.77 ? C1 PEE 403 s 1 
HETATM 23 O O3P PEE . . . BB 30 143.185 102.555 145.364 1 35.49 ? O3P PEE 403 s 1 
HETATM 24 P P PEE . . . BB 30 144.101 102.142 146.676 1 47.92 ? P PEE 403 s 1 
HETATM 25 O O2P PEE . . . BB 30 143.88 103.153 147.776 1 41.29 ? O2P PEE 403 s 1 
HETATM 26 O O1P PEE . . . BB 30 143.698 100.773 147.165 1 41.95 ? O1P PEE 403 s 1 
HETATM 27 O O4P PEE . . . BB 30 145.699 102.126 146.255 1 43.92 ? O4P PEE 403 s 1 
HETATM 28 C C4 PEE . . . BB 30 146.332 103.346 145.97 1 37.88 ? C4 PEE 403 s 1 
HETATM 29 C C5 PEE . . . BB 30 147.035 103.839 147.237 1 39.68 ? C5 PEE 403 s 1 
HETATM 30 N N PEE . . . BB 30 148.35 103.236 147.357 1 36.6 ? N PEE 403 s 1 
HETATM 31 C C3 PEE . . . BB 30 140.861 102.337 144.499 1 41.46 ? C3 PEE 403 s 1 
HETATM 32 O O3 PEE . . . BB 30 139.553 102.075 144.072 1 34.89 ? O3 PEE 403 s 1 
HETATM 33 C C30 PEE . . . BB 30 138.585 102.57 144.957 1 35.37 ? C30 PEE 403 s 1 
HETATM 34 O O5 PEE . . . BB 30 138.83 102.646 146.113 1 46.74 ? O5 PEE 403 s 1 
HETATM 35 C C31 PEE . . . BB 30 137.213 103.016 144.448 1 34.11 ? C31 PEE 403 s 1 
HETATM 36 C C32 PEE . . . BB 30 136.449 103.814 145.509 1 33.01 ? C32 PEE 403 s 1 
HETATM 37 C C33 PEE . . . BB 30 134.975 104.02 145.151 1 29.01 ? C33 PEE 403 s 1 
HETATM 38 C C34 PEE . . . BB 30 134.136 102.761 145.385 1 30.01 ? C34 PEE 403 s 1 
HETATM 39 C C35 PEE . . . BB 30 132.762 102.855 144.712 1 36.25 ? C35 PEE 403 s 1 
HETATM 40 C C36 PEE . . . BB 30 131.952 101.562 144.836 1 37.71 ? C36 PEE 403 s 1 
HETATM 41 C C37 PEE . . . BB 30 132.775 100.304 144.555 1 34.19 ? C37 PEE 403 s 1 
HETATM 42 C C38 PEE . . . BB 30 132.439 99.68 143.201 1 31.92 ? C38 PEE 403 s 1 
HETATM 43 C C39 PEE . . . BB 30 130.942 99.682 142.911 1 34.2 ? C39 PEE 403 s 1 
HETATM 44 C C40 PEE . . . BB 30 130.575 98.781 141.737 1 38.46 ? C40 PEE 403 s 1 
HETATM 45 C C41 PEE . . . BB 30 131.573 98.9 140.592 1 41.11 ? C41 PEE 403 s 1 
HETATM 46 C C42 PEE . . . BB 30 130.901 99.137 139.246 1 37.84 ? C42 PEE 403 s 1 
HETATM 47 C C43 PEE . . . BB 30 131.923 99.295 138.125 1 38.88 ? C43 PEE 403 s 1 
HETATM 48 C C44 PEE . . . BB 30 131.291 99.244 136.739 1 36.45 ? C44 PEE 403 s 1 
HETATM 49 C C45 PEE . . . BB 30 129.988 100.036 136.661 1 33.38 ? C45 PEE 403 s 1 
HETATM 50 C C46 PEE . . . BB 30 129.265 99.828 135.332 1 37.59 ? C46 PEE 403 s 1 
HETATM 51 C C47 PEE . . . BB 30 129.931 100.59 134.188 1 34.24 ? C47 PEE 403 s 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           51 
#