data_7VY9 # _model_server_result.job_id 7BzFnxe05p0juNhY9MhG3w _model_server_result.datetime_utc '2024-12-21 16:17:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CB","auth_seq_id":404}' # _entry.id 7VY9 # _exptl.entry_id 7VY9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 863.343 _entity.id 34 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Coenzyme Q10,(2Z,6E,10Z,14E,18E,22E,26Z)-isomer' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 34 _struct_asym.id CB _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id UQ _chem_comp.mon_nstd_flag . _chem_comp.name 'Coenzyme Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-isomer' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VY9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 31 CDL V 1 202 203 CDL CDL . GA 30 PEE W 1 201 202 PEE PEE . HA 32 8Q1 X 1 201 201 8Q1 8Q1 . IA 31 CDL a 1 201 201 CDL CDL . JA 33 PLX a 1 202 101 PLX PLX . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 30 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 CDL k 1 101 101 CDL CDL . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 712 CDL CDL . SA 31 CDL l 1 703 713 CDL CDL . TA 30 PEE l 1 704 719 PEE PEE . UA 30 PEE l 1 705 720 PEE PEE . VA 31 CDL n 1 101 102 CDL CDL . WA 30 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 205 PLX PLX . YA 33 PLX r 1 503 201 PLX PLX . ZA 30 PEE s 1 401 201 PEE PEE . AB 31 CDL s 1 402 201 CDL CDL . BB 30 PEE s 1 403 401 PEE PEE . CB 34 UQ s 1 404 402 UQ UQ . DB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ . . . CB 34 117.683 112.047 153.182 1 54.69 ? C1 UQ 404 s 1 HETATM 2 C C2 UQ . . . CB 34 118.131 111.369 154.486 1 55.94 ? C2 UQ 404 s 1 HETATM 3 C C3 UQ . . . CB 34 119.125 111.881 155.186 1 56.29 ? C3 UQ 404 s 1 HETATM 4 C C4 UQ . . . CB 34 119.833 113.153 154.699 1 56.66 ? C4 UQ 404 s 1 HETATM 5 C C5 UQ . . . CB 34 119.386 113.832 153.395 1 56.9 ? C5 UQ 404 s 1 HETATM 6 C C6 UQ . . . CB 34 118.391 113.321 152.693 1 52.25 ? C6 UQ 404 s 1 HETATM 7 C CM5 UQ . . . CB 34 120.103 115.105 152.918 1 53.49 ? CM5 UQ 404 s 1 HETATM 8 C CM3 UQ . . . CB 34 120.554 110.318 156.197 1 53.01 ? CM3 UQ 404 s 1 HETATM 9 C CM2 UQ . . . CB 34 116.318 110.454 155.675 1 49.39 ? CM2 UQ 404 s 1 HETATM 10 C C7 UQ . . . CB 34 117.931 113.987 151.387 1 51.21 ? C7 UQ 404 s 1 HETATM 11 C C8 UQ . . . CB 34 116.813 114.994 151.699 1 49.86 ? C8 UQ 404 s 1 HETATM 12 C C9 UQ . . . CB 34 115.409 114.361 151.677 1 49.55 ? C9 UQ 404 s 1 HETATM 13 C C10 UQ . . . CB 34 114.523 114.875 152.809 1 51.27 ? C10 UQ 404 s 1 HETATM 14 C C11 UQ . . . CB 34 114.733 114.469 150.311 1 47.43 ? C11 UQ 404 s 1 HETATM 15 C C12 UQ . . . CB 34 114.156 115.887 150.138 1 45.08 ? C12 UQ 404 s 1 HETATM 16 C C13 UQ . . . CB 34 113.154 115.893 148.968 1 52.49 ? C13 UQ 404 s 1 HETATM 17 C C14 UQ . . . CB 34 113.331 117.09 148.004 1 51.2 ? C14 UQ 404 s 1 HETATM 18 C C15 UQ . . . CB 34 114.11 118.249 148.599 1 46.81 ? C15 UQ 404 s 1 HETATM 19 C C16 UQ . . . CB 34 112.013 117.523 147.327 1 51.31 ? C16 UQ 404 s 1 HETATM 20 C C17 UQ . . . CB 34 112.29 117.831 145.829 1 50.86 ? C17 UQ 404 s 1 HETATM 21 C C18 UQ . . . CB 34 110.994 117.607 145.001 1 47.9 ? C18 UQ 404 s 1 HETATM 22 C C19 UQ . . . CB 34 110.643 118.803 144.069 1 52.1 ? C19 UQ 404 s 1 HETATM 23 C C20 UQ . . . CB 34 111.347 120.098 144.459 1 47.65 ? C20 UQ 404 s 1 HETATM 24 C C21 UQ . . . CB 34 110.805 118.461 142.566 1 48.29 ? C21 UQ 404 s 1 HETATM 25 C C22 UQ . . . CB 34 109.756 119.236 141.746 1 43.8 ? C22 UQ 404 s 1 HETATM 26 C C23 UQ . . . CB 34 108.347 118.735 142.121 1 52.65 ? C23 UQ 404 s 1 HETATM 27 C C24 UQ . . . CB 34 107.409 118.58 140.905 1 53.91 ? C24 UQ 404 s 1 HETATM 28 C C25 UQ . . . CB 34 106.1 117.88 141.253 1 48.04 ? C25 UQ 404 s 1 HETATM 29 C C26 UQ . . . CB 34 108.111 117.972 139.672 1 53.66 ? C26 UQ 404 s 1 HETATM 30 C C27 UQ . . . CB 34 107.449 118.499 138.383 1 52.51 ? C27 UQ 404 s 1 HETATM 31 C C28 UQ . . . CB 34 107.759 119.995 138.208 1 55.01 ? C28 UQ 404 s 1 HETATM 32 C C29 UQ . . . CB 34 106.598 120.774 137.565 1 58.81 ? C29 UQ 404 s 1 HETATM 33 C C30 UQ . . . CB 34 106.981 122.205 137.176 1 53.4 ? C30 UQ 404 s 1 HETATM 34 C C31 UQ . . . CB 34 105.918 120.007 136.423 1 48.46 ? C31 UQ 404 s 1 HETATM 35 O O2 UQ . . . CB 34 117.484 110.207 154.929 1 55.19 ? O2 UQ 404 s 1 HETATM 36 O O3 UQ . . . CB 34 119.535 111.264 156.373 1 58.67 ? O3 UQ 404 s 1 HETATM 37 O O4 UQ . . . CB 34 120.723 113.61 155.328 1 59.14 ? O4 UQ 404 s 1 HETATM 38 O O1 UQ . . . CB 34 116.791 111.588 152.552 1 58.43 ? O1 UQ 404 s 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 38 #