data_7VY9 # _model_server_result.job_id 7p9NXL_fnrZHq3C2D82NNg _model_server_result.datetime_utc '2024-12-21 15:48:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"WA","auth_seq_id":501}' # _entry.id 7VY9 # _exptl.entry_id 7VY9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 GA N N ? 30 MA N N ? 30 QA N N ? 30 TA N N ? 30 UA N N ? 30 WA N N ? 30 ZA N N ? 30 BB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 7VY9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 31 CDL V 1 202 203 CDL CDL . GA 30 PEE W 1 201 202 PEE PEE . HA 32 8Q1 X 1 201 201 8Q1 8Q1 . IA 31 CDL a 1 201 201 CDL CDL . JA 33 PLX a 1 202 101 PLX PLX . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 30 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 CDL k 1 101 101 CDL CDL . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 712 CDL CDL . SA 31 CDL l 1 703 713 CDL CDL . TA 30 PEE l 1 704 719 PEE PEE . UA 30 PEE l 1 705 720 PEE PEE . VA 31 CDL n 1 101 102 CDL CDL . WA 30 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 205 PLX PLX . YA 33 PLX r 1 503 201 PLX PLX . ZA 30 PEE s 1 401 201 PEE PEE . AB 31 CDL s 1 402 201 CDL CDL . BB 30 PEE s 1 403 401 PEE PEE . CB 34 UQ s 1 404 402 UQ UQ . DB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . WA 30 184.875 171.698 120.383 1 40.45 ? C27 PEE 501 r 1 HETATM 2 C C26 PEE . . . WA 30 183.49 171.872 119.762 1 37.01 ? C26 PEE 501 r 1 HETATM 3 C C25 PEE . . . WA 30 183.53 171.9 118.239 1 30.94 ? C25 PEE 501 r 1 HETATM 4 C C24 PEE . . . WA 30 182.181 171.515 117.633 1 42.87 ? C24 PEE 501 r 1 HETATM 5 C C23 PEE . . . WA 30 182.257 171.254 116.13 1 44.71 ? C23 PEE 501 r 1 HETATM 6 C C22 PEE . . . WA 30 181.023 170.51 115.623 1 41.97 ? C22 PEE 501 r 1 HETATM 7 C C21 PEE . . . WA 30 180.298 171.258 114.5 1 43.95 ? C21 PEE 501 r 1 HETATM 8 C C20 PEE . . . WA 30 181.069 171.239 113.18 1 38.87 ? C20 PEE 501 r 1 HETATM 9 C C19 PEE . . . WA 30 180.286 171.908 112.05 1 42.51 ? C19 PEE 501 r 1 HETATM 10 C C18 PEE . . . WA 30 179.078 171.08 111.607 1 40.2 ? C18 PEE 501 r 1 HETATM 11 C C17 PEE . . . WA 30 179.481 169.679 111.145 1 35.66 ? C17 PEE 501 r 1 HETATM 12 C C16 PEE . . . WA 30 178.297 168.857 110.639 1 36.03 ? C16 PEE 501 r 1 HETATM 13 C C15 PEE . . . WA 30 178.181 168.886 109.115 1 35.49 ? C15 PEE 501 r 1 HETATM 14 C C14 PEE . . . WA 30 177.632 167.575 108.547 1 30.66 ? C14 PEE 501 r 1 HETATM 15 C C13 PEE . . . WA 30 178.716 166.744 107.853 1 36.6 ? C13 PEE 501 r 1 HETATM 16 C C12 PEE . . . WA 30 179.127 167.338 106.499 1 33.62 ? C12 PEE 501 r 1 HETATM 17 C C11 PEE . . . WA 30 178.468 166.61 105.321 1 31.8 ? C11 PEE 501 r 1 HETATM 18 C C10 PEE . . . WA 30 177.951 167.584 104.255 1 38.23 ? C10 PEE 501 r 1 HETATM 19 O O4 PEE . . . WA 30 178.279 168.719 104.286 1 45.58 ? O4 PEE 501 r 1 HETATM 20 O O2 PEE . . . WA 30 177.09 167.136 103.244 1 37.73 ? O2 PEE 501 r 1 HETATM 21 C C2 PEE . . . WA 30 176.004 167.99 103.003 1 39.94 ? C2 PEE 501 r 1 HETATM 22 C C1 PEE . . . WA 30 175.383 167.642 101.652 1 39.21 ? C1 PEE 501 r 1 HETATM 23 O O3P PEE . . . WA 30 174.528 166.545 101.832 1 35.53 ? O3P PEE 501 r 1 HETATM 24 P P PEE . . . WA 30 173.163 166.447 100.905 1 64.71 ? P PEE 501 r 1 HETATM 25 O O2P PEE . . . WA 30 171.974 166.191 101.8 1 48.41 ? O2P PEE 501 r 1 HETATM 26 O O1P PEE . . . WA 30 173.309 165.308 99.925 1 47.07 ? O1P PEE 501 r 1 HETATM 27 O O4P PEE . . . WA 30 172.942 167.867 100.087 1 45.44 ? O4P PEE 501 r 1 HETATM 28 C C4 PEE . . . WA 30 173.247 167.922 98.716 1 36.86 ? C4 PEE 501 r 1 HETATM 29 C C5 PEE . . . WA 30 172.014 167.488 97.92 1 35.32 ? C5 PEE 501 r 1 HETATM 30 N N PEE . . . WA 30 170.987 168.511 97.977 1 39.85 ? N PEE 501 r 1 HETATM 31 C C3 PEE . . . WA 30 174.955 167.818 104.096 1 36.4 ? C3 PEE 501 r 1 HETATM 32 O O3 PEE . . . WA 30 174.974 168.95 104.918 1 37.37 ? O3 PEE 501 r 1 HETATM 33 C C30 PEE . . . WA 30 174.228 168.801 106.094 1 41.06 ? C30 PEE 501 r 1 HETATM 34 O O5 PEE . . . WA 30 173.272 168.103 106.1 1 41.95 ? O5 PEE 501 r 1 HETATM 35 C C31 PEE . . . WA 30 174.649 169.534 107.371 1 32.9 ? C31 PEE 501 r 1 HETATM 36 C C32 PEE . . . WA 30 173.516 169.619 108.397 1 36.51 ? C32 PEE 501 r 1 HETATM 37 C C33 PEE . . . WA 30 174.02 169.984 109.798 1 36.3 ? C33 PEE 501 r 1 HETATM 38 C C34 PEE . . . WA 30 173.438 169.063 110.874 1 39.71 ? C34 PEE 501 r 1 HETATM 39 C C35 PEE . . . WA 30 174.273 169.047 112.159 1 42.19 ? C35 PEE 501 r 1 HETATM 40 C C36 PEE . . . WA 30 174.133 170.342 112.965 1 43.29 ? C36 PEE 501 r 1 HETATM 41 C C37 PEE . . . WA 30 175.294 170.562 113.938 1 43.1 ? C37 PEE 501 r 1 HETATM 42 C C38 PEE . . . WA 30 175.33 171.992 114.48 1 41.12 ? C38 PEE 501 r 1 HETATM 43 C C39 PEE . . . WA 30 175.193 173.033 113.373 1 42.44 ? C39 PEE 501 r 1 HETATM 44 C C40 PEE . . . WA 30 175.454 174.453 113.865 1 45.21 ? C40 PEE 501 r 1 HETATM 45 C C41 PEE . . . WA 30 176.837 174.613 114.485 1 46.09 ? C41 PEE 501 r 1 HETATM 46 C C42 PEE . . . WA 30 177.955 174.503 113.454 1 45.04 ? C42 PEE 501 r 1 HETATM 47 C C43 PEE . . . WA 30 179.194 175.304 113.845 1 42.41 ? C43 PEE 501 r 1 HETATM 48 C C44 PEE . . . WA 30 179.545 175.163 115.321 1 43.19 ? C44 PEE 501 r 1 HETATM 49 C C45 PEE . . . WA 30 181.004 175.518 115.603 1 44.71 ? C45 PEE 501 r 1 HETATM 50 C C46 PEE . . . WA 30 181.443 175.104 117.007 1 48.29 ? C46 PEE 501 r 1 HETATM 51 C C47 PEE . . . WA 30 181.152 176.181 118.052 1 40.52 ? C47 PEE 501 r 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 51 #