data_7VY9 # _model_server_result.job_id QRp8KqLMtp5gyxe7acvf8A _model_server_result.datetime_utc '2024-12-21 15:50:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":503}' # _entry.id 7VY9 # _exptl.entry_id 7VY9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 767.132 _entity.id 33 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 33 JA N N ? 33 KA N N ? 33 NA N N ? 33 OA N N ? 33 XA N N ? 33 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C42 H89 N O8 P 1' _chem_comp.formula_weight 767.132 _chem_comp.id PLX _chem_comp.mon_nstd_flag . _chem_comp.name (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VY9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 31 CDL V 1 202 203 CDL CDL . GA 30 PEE W 1 201 202 PEE PEE . HA 32 8Q1 X 1 201 201 8Q1 8Q1 . IA 31 CDL a 1 201 201 CDL CDL . JA 33 PLX a 1 202 101 PLX PLX . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 30 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 CDL k 1 101 101 CDL CDL . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 712 CDL CDL . SA 31 CDL l 1 703 713 CDL CDL . TA 30 PEE l 1 704 719 PEE PEE . UA 30 PEE l 1 705 720 PEE PEE . VA 31 CDL n 1 101 102 CDL CDL . WA 30 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 205 PLX PLX . YA 33 PLX r 1 503 201 PLX PLX . ZA 30 PEE s 1 401 201 PEE PEE . AB 31 CDL s 1 402 201 CDL CDL . BB 30 PEE s 1 403 401 PEE PEE . CB 34 UQ s 1 404 402 UQ UQ . DB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C23 PLX . . . YA 33 230.988 175.905 124.234 1 51.73 ? C23 PLX 503 r 1 HETATM 2 C C22 PLX . . . YA 33 231.928 176.783 123.353 1 55.26 ? C22 PLX 503 r 1 HETATM 3 C C21 PLX . . . YA 33 231.142 177.848 122.518 1 54.07 ? C21 PLX 503 r 1 HETATM 4 C C20 PLX . . . YA 33 232.096 178.801 121.725 1 50.84 ? C20 PLX 503 r 1 HETATM 5 C C19 PLX . . . YA 33 233.106 178.014 120.824 1 55.15 ? C19 PLX 503 r 1 HETATM 6 C C18 PLX . . . YA 33 232.474 177.592 119.445 1 52.9 ? C18 PLX 503 r 1 HETATM 7 C C17 PLX . . . YA 33 233.477 176.762 118.551 1 56.65 ? C17 PLX 503 r 1 HETATM 8 C C16 PLX . . . YA 33 233.437 177.195 117.044 1 53.76 ? C16 PLX 503 r 1 HETATM 9 C C15 PLX . . . YA 33 231.966 177.374 116.504 1 54.05 ? C15 PLX 503 r 1 HETATM 10 C C14 PLX . . . YA 33 231.79 178.707 115.699 1 54.81 ? C14 PLX 503 r 1 HETATM 11 C C13 PLX . . . YA 33 231.748 178.477 114.141 1 53.91 ? C13 PLX 503 r 1 HETATM 12 C C12 PLX . . . YA 33 230.31 178.672 113.552 1 53.28 ? C12 PLX 503 r 1 HETATM 13 C C11 PLX . . . YA 33 230.047 177.775 112.295 1 51.69 ? C11 PLX 503 r 1 HETATM 14 C C10 PLX . . . YA 33 230.084 178.594 110.964 1 52.28 ? C10 PLX 503 r 1 HETATM 15 C C9 PLX . . . YA 33 229.255 177.908 109.817 1 52.82 ? C9 PLX 503 r 1 HETATM 16 C C8 PLX . . . YA 33 230.018 176.684 109.183 1 48.66 ? C8 PLX 503 r 1 HETATM 17 C C7 PLX . . . YA 33 229.072 175.441 108.956 1 51.77 ? C7 PLX 503 r 1 HETATM 18 C C6 PLX . . . YA 33 228.309 175.523 107.607 1 53.46 ? C6 PLX 503 r 1 HETATM 19 O O7 PLX . . . YA 33 229.22 175.65 106.581 1 53.76 ? O7 PLX 503 r 1 HETATM 20 O O6 PLX . . . YA 33 227.542 174.344 107.421 1 57.84 ? O6 PLX 503 r 1 HETATM 21 C C4 PLX . . . YA 33 226.201 174.581 107.071 1 56.8 ? C4 PLX 503 r 1 HETATM 22 C C3 PLX . . . YA 33 226.146 175.241 105.685 1 47.1 ? C3 PLX 503 r 1 HETATM 23 O O4 PLX . . . YA 33 225.114 174.603 104.927 1 48.43 ? O4 PLX 503 r 1 HETATM 24 P P1 PLX . . . YA 33 225.36 174.387 103.285 1 77.65 ? P1 PLX 503 r 1 HETATM 25 O O1 PLX . . . YA 33 226.279 173.013 103.043 1 63.78 ? O1 PLX 503 r 1 HETATM 26 C C2 PLX . . . YA 33 227.684 173.151 102.822 1 50.08 ? C2 PLX 503 r 1 HETATM 27 C C1 PLX . . . YA 33 228.189 171.871 102.071 1 42.31 ? C1 PLX 503 r 1 HETATM 28 N N1 PLX . . . YA 33 227.925 171.963 100.593 1 52.52 ? N1 PLX 503 r 1 HETATM 29 C C1C PLX . . . YA 33 228.565 173.205 100.117 1 54.71 ? C1C PLX 503 r 1 HETATM 30 C C1B PLX . . . YA 33 228.567 170.768 99.97 1 47.97 ? C1B PLX 503 r 1 HETATM 31 C C1A PLX . . . YA 33 226.528 171.993 100.091 1 51.37 ? C1A PLX 503 r 1 HETATM 32 O O2 PLX . . . YA 33 226.08 175.586 102.709 1 48.75 ? O2 PLX 503 r 1 HETATM 33 C C5 PLX . . . YA 33 225.436 173.244 107.026 1 52.28 ? C5 PLX 503 r 1 HETATM 34 O O8 PLX . . . YA 33 224.702 173.09 108.242 1 55.27 ? O8 PLX 503 r 1 HETATM 35 C C24 PLX . . . YA 33 224.071 171.834 108.36 1 48.68 ? C24 PLX 503 r 1 HETATM 36 O O9 PLX . . . YA 33 223.355 171.576 107.2 1 49.6 ? O9 PLX 503 r 1 HETATM 37 C C25 PLX . . . YA 33 223.108 171.839 109.566 1 42.32 ? C25 PLX 503 r 1 HETATM 38 C C26 PLX . . . YA 33 222.256 170.531 109.644 1 45.5 ? C26 PLX 503 r 1 HETATM 39 C C27 PLX . . . YA 33 220.925 170.732 110.435 1 45.87 ? C27 PLX 503 r 1 HETATM 40 C C28 PLX . . . YA 33 220.845 169.847 111.725 1 45.69 ? C28 PLX 503 r 1 HETATM 41 C C29 PLX . . . YA 33 220.696 168.324 111.404 1 46.84 ? C29 PLX 503 r 1 HETATM 42 C C30 PLX . . . YA 33 219.594 167.631 112.29 1 51.21 ? C30 PLX 503 r 1 HETATM 43 C C31 PLX . . . YA 33 220.214 166.782 113.464 1 47.37 ? C31 PLX 503 r 1 HETATM 44 C C32 PLX . . . YA 33 219.134 165.877 114.179 1 49.51 ? C32 PLX 503 r 1 HETATM 45 C C33 PLX . . . YA 33 218.621 166.501 115.538 1 47.39 ? C33 PLX 503 r 1 HETATM 46 C C34 PLX . . . YA 33 217.045 166.468 115.658 1 43.99 ? C34 PLX 503 r 1 HETATM 47 C C35 PLX . . . YA 33 216.355 167.726 114.982 1 44.21 ? C35 PLX 503 r 1 HETATM 48 C C36 PLX . . . YA 33 214.79 167.599 114.947 1 44.14 ? C36 PLX 503 r 1 HETATM 49 C C37 PLX . . . YA 33 214.09 168.869 114.342 1 45.05 ? C37 PLX 503 r 1 HETATM 50 C C38 PLX . . . YA 33 213.582 168.65 112.88 1 46.42 ? C38 PLX 503 r 1 HETATM 51 C C39 PLX . . . YA 33 214.727 168.649 111.835 1 45.68 ? C39 PLX 503 r 1 HETATM 52 O O3 PLX . . . YA 33 224.024 174.22 102.59 1 58.9 ? O3 PLX 503 r 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 76 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 52 #