data_7VY9
#
_model_server_result.job_id            rQ3YNnoqp7io13wLkpFMnQ 
_model_server_result.datetime_utc      '2024-12-21 15:40:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vy9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"QA","auth_seq_id":701}' 
#
_entry.id    7VY9 
#
_exptl.entry_id    7VY9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          30 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VY9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VY9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 30 DA N N 
? 30 GA N N 
? 30 MA N N 
? 30 QA N N 
? 30 TA N N 
? 30 UA N N 
? 30 WA N N 
? 30 ZA N N 
? 30 BB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
_atom_sites.entry_id                     7VY9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE Q 1 101 718 PEE PEE . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 31 CDL V 1 202 203 CDL CDL . 
GA 30 PEE W 1 201 202 PEE PEE . 
HA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
IA 31 CDL a 1 201 201 CDL CDL . 
JA 33 PLX a 1 202 101 PLX PLX . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 30 PEE j 1 201 101 PEE PEE . 
NA 33 PLX j 1 202 202 PLX PLX . 
OA 33 PLX j 1 203 203 PLX PLX . 
PA 31 CDL k 1 101 101 CDL CDL . 
QA 30 PEE l 1 701 207 PEE PEE . 
RA 31 CDL l 1 702 712 CDL CDL . 
SA 31 CDL l 1 703 713 CDL CDL . 
TA 30 PEE l 1 704 719 PEE PEE . 
UA 30 PEE l 1 705 720 PEE PEE . 
VA 31 CDL n 1 101 102 CDL CDL . 
WA 30 PEE r 1 501 202 PEE PEE . 
XA 33 PLX r 1 502 205 PLX PLX . 
YA 33 PLX r 1 503 201 PLX PLX . 
ZA 30 PEE s 1 401 201 PEE PEE . 
AB 31 CDL s 1 402 201 CDL CDL . 
BB 30 PEE s 1 403 401 PEE PEE . 
CB 34 UQ s 1 404 402 UQ UQ . 
DB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C21 PEE . . . QA 30 165.351 166.224 122.081 1 61.25 ? C21 PEE 701 l 1 
HETATM 2 C C20 PEE . . . QA 30 165.662 167.4 123.008 1 64.68 ? C20 PEE 701 l 1 
HETATM 3 C C19 PEE . . . QA 30 167.16 167.533 123.287 1 63.36 ? C19 PEE 701 l 1 
HETATM 4 C C18 PEE . . . QA 30 167.492 168.787 124.097 1 61.59 ? C18 PEE 701 l 1 
HETATM 5 C C17 PEE . . . QA 30 166.691 168.862 125.398 1 62.73 ? C17 PEE 701 l 1 
HETATM 6 C C16 PEE . . . QA 30 167.165 169.997 126.304 1 60.32 ? C16 PEE 701 l 1 
HETATM 7 C C15 PEE . . . QA 30 166.096 170.417 127.314 1 57.97 ? C15 PEE 701 l 1 
HETATM 8 C C14 PEE . . . QA 30 166.611 171.479 128.29 1 61.79 ? C14 PEE 701 l 1 
HETATM 9 C C13 PEE . . . QA 30 167.405 170.868 129.449 1 61.76 ? C13 PEE 701 l 1 
HETATM 10 C C12 PEE . . . QA 30 167.521 171.82 130.648 1 60.88 ? C12 PEE 701 l 1 
HETATM 11 C C11 PEE . . . QA 30 166.238 172.627 130.879 1 62.63 ? C11 PEE 701 l 1 
HETATM 12 C C10 PEE . . . QA 30 165.84 172.681 132.36 1 67.27 ? C10 PEE 701 l 1 
HETATM 13 O O4 PEE . . . QA 30 164.968 171.985 132.758 1 64.59 ? O4 PEE 701 l 1 
HETATM 14 O O2 PEE . . . QA 30 166.507 173.551 133.238 1 69.08 ? O2 PEE 701 l 1 
HETATM 15 C C2 PEE . . . QA 30 165.78 174.704 133.569 1 66.02 ? C2 PEE 701 l 1 
HETATM 16 C C1 PEE . . . QA 30 164.891 174.427 134.781 1 64.16 ? C1 PEE 701 l 1 
HETATM 17 O O3P PEE . . . QA 30 165.549 174.892 135.93 1 67.28 ? O3P PEE 701 l 1 
HETATM 18 P P PEE . . . QA 30 166.419 173.808 136.825 1 84.97 ? P PEE 701 l 1 
HETATM 19 O O2P PEE . . . QA 30 167.893 174.106 136.679 1 66.26 ? O2P PEE 701 l 1 
HETATM 20 O O1P PEE . . . QA 30 166.134 172.409 136.335 1 68.8 ? O1P PEE 701 l 1 
HETATM 21 O O4P PEE . . . QA 30 165.986 173.937 138.414 1 72.18 ? O4P PEE 701 l 1 
HETATM 22 C C4 PEE . . . QA 30 166.976 173.767 139.395 1 65 ? C4 PEE 701 l 1 
HETATM 23 C C5 PEE . . . QA 30 166.548 174.546 140.641 1 64.62 ? C5 PEE 701 l 1 
HETATM 24 N N PEE . . . QA 30 165.312 174.002 141.172 1 66.2 ? N PEE 701 l 1 
HETATM 25 C C3 PEE . . . QA 30 166.741 175.846 133.893 1 65.9 ? C3 PEE 701 l 1 
HETATM 26 O O3 PEE . . . QA 30 167.927 175.647 133.175 1 69.36 ? O3 PEE 701 l 1 
HETATM 27 C C30 PEE . . . QA 30 168.606 176.829 132.849 1 65.49 ? C30 PEE 701 l 1 
HETATM 28 O O5 PEE . . . QA 30 168.939 177.576 133.705 1 64.86 ? O5 PEE 701 l 1 
HETATM 29 C C31 PEE . . . QA 30 168.924 177.147 131.386 1 60.18 ? C31 PEE 701 l 1 
HETATM 30 C C32 PEE . . . QA 30 169.993 176.211 130.819 1 60.08 ? C32 PEE 701 l 1 
HETATM 31 C C33 PEE . . . QA 30 169.957 176.134 129.291 1 60.99 ? C33 PEE 701 l 1 
HETATM 32 C C34 PEE . . . QA 30 169.123 174.955 128.785 1 65.09 ? C34 PEE 701 l 1 
HETATM 33 C C35 PEE . . . QA 30 167.856 175.405 128.049 1 63.37 ? C35 PEE 701 l 1 
HETATM 34 C C36 PEE . . . QA 30 167.697 174.714 126.692 1 61.93 ? C36 PEE 701 l 1 
HETATM 35 C C37 PEE . . . QA 30 166.463 175.211 125.938 1 61.2 ? C37 PEE 701 l 1 
HETATM 36 C C38 PEE . . . QA 30 166.685 175.28 124.428 1 65.37 ? C38 PEE 701 l 1 
HETATM 37 C C39 PEE . . . QA 30 166.198 174.032 123.7 1 64.99 ? C39 PEE 701 l 1 
HETATM 38 C C40 PEE . . . QA 30 166.4 174.144 122.192 1 63.78 ? C40 PEE 701 l 1 
HETATM 39 C C41 PEE . . . QA 30 166.124 172.835 121.462 1 63.95 ? C41 PEE 701 l 1 
HETATM 40 C C42 PEE . . . QA 30 167.098 172.604 120.312 1 59.95 ? C42 PEE 701 l 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    68 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           40 
#