data_7VY9 # _model_server_result.job_id PGMYgxJKdTWh6xFjBGM14g _model_server_result.datetime_utc '2024-11-14 17:38:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"RA","auth_seq_id":702}' # _entry.id 7VY9 # _exptl.entry_id 7VY9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 EA N N ? 31 FA N N ? 31 IA N N ? 31 LA N N ? 31 PA N N ? 31 RA N N ? 31 SA N N ? 31 VA N N ? 31 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VY9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 31 CDL V 1 202 203 CDL CDL . GA 30 PEE W 1 201 202 PEE PEE . HA 32 8Q1 X 1 201 201 8Q1 8Q1 . IA 31 CDL a 1 201 201 CDL CDL . JA 33 PLX a 1 202 101 PLX PLX . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 30 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 CDL k 1 101 101 CDL CDL . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 712 CDL CDL . SA 31 CDL l 1 703 713 CDL CDL . TA 30 PEE l 1 704 719 PEE PEE . UA 30 PEE l 1 705 720 PEE PEE . VA 31 CDL n 1 101 102 CDL CDL . WA 30 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 205 PLX PLX . YA 33 PLX r 1 503 201 PLX PLX . ZA 30 PEE s 1 401 201 PEE PEE . AB 31 CDL s 1 402 201 CDL CDL . BB 30 PEE s 1 403 401 PEE PEE . CB 34 UQ s 1 404 402 UQ UQ . DB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . RA 31 227.319 180.555 132.601 1 46.78 ? C1 CDL 702 l 1 HETATM 2 O O1 CDL . . . RA 31 226.115 180.153 132.022 1 40.49 ? O1 CDL 702 l 1 HETATM 3 C CA2 CDL . . . RA 31 227.646 181.974 132.072 1 56 ? CA2 CDL 702 l 1 HETATM 4 O OA2 CDL . . . RA 31 226.792 182.242 130.969 1 58.96 ? OA2 CDL 702 l 1 HETATM 5 P PA1 CDL . . . RA 31 227.07 183.6 130.06 1 55.5 ? PA1 CDL 702 l 1 HETATM 6 O OA3 CDL . . . RA 31 228.538 183.689 129.73 1 51.05 ? OA3 CDL 702 l 1 HETATM 7 O OA4 CDL . . . RA 31 226.653 184.81 130.839 1 44.51 ? OA4 CDL 702 l 1 HETATM 8 O OA5 CDL . . . RA 31 226.187 183.52 128.656 1 41.86 ? OA5 CDL 702 l 1 HETATM 9 C CA3 CDL . . . RA 31 226.459 182.467 127.745 1 45.09 ? CA3 CDL 702 l 1 HETATM 10 C CA4 CDL . . . RA 31 226.076 182.93 126.347 1 50.66 ? CA4 CDL 702 l 1 HETATM 11 O OA6 CDL . . . RA 31 225.292 184.087 126.429 1 54.27 ? OA6 CDL 702 l 1 HETATM 12 C CA5 CDL . . . RA 31 225.979 185.271 126.051 1 47.98 ? CA5 CDL 702 l 1 HETATM 13 O OA7 CDL . . . RA 31 227.137 185.391 126.303 1 53.05 ? OA7 CDL 702 l 1 HETATM 14 C C11 CDL . . . RA 31 225.225 186.407 125.294 1 43.27 ? C11 CDL 702 l 1 HETATM 15 C C12 CDL . . . RA 31 223.907 185.916 124.688 1 43.8 ? C12 CDL 702 l 1 HETATM 16 C C13 CDL . . . RA 31 223.334 186.897 123.67 1 44.81 ? C13 CDL 702 l 1 HETATM 17 C C14 CDL . . . RA 31 224.114 186.875 122.342 1 43.95 ? C14 CDL 702 l 1 HETATM 18 C C15 CDL . . . RA 31 223.175 186.748 121.109 1 47 ? C15 CDL 702 l 1 HETATM 19 C C16 CDL . . . RA 31 223.434 187.849 120.051 1 44.25 ? C16 CDL 702 l 1 HETATM 20 C C17 CDL . . . RA 31 222.251 187.986 119.047 1 43.83 ? C17 CDL 702 l 1 HETATM 21 C C18 CDL . . . RA 31 222.413 187.051 117.822 1 43.78 ? C18 CDL 702 l 1 HETATM 22 C C19 CDL . . . RA 31 223.584 187.491 116.9 1 47.28 ? C19 CDL 702 l 1 HETATM 23 C C20 CDL . . . RA 31 224.461 186.296 116.457 1 50.48 ? C20 CDL 702 l 1 HETATM 24 C C21 CDL . . . RA 31 223.697 185.31 115.535 1 50.32 ? C21 CDL 702 l 1 HETATM 25 C C22 CDL . . . RA 31 224.062 185.511 114.038 1 50.24 ? C22 CDL 702 l 1 HETATM 26 C C23 CDL . . . RA 31 225.591 185.513 113.812 1 51.5 ? C23 CDL 702 l 1 HETATM 27 C C24 CDL . . . RA 31 225.967 185.622 112.312 1 49.87 ? C24 CDL 702 l 1 HETATM 28 C C25 CDL . . . RA 31 225.398 186.893 111.658 1 47.41 ? C25 CDL 702 l 1 HETATM 29 C C26 CDL . . . RA 31 226.101 187.221 110.321 1 46.39 ? C26 CDL 702 l 1 HETATM 30 C C27 CDL . . . RA 31 227.628 187.217 110.453 1 48.2 ? C27 CDL 702 l 1 HETATM 31 C CA6 CDL . . . RA 31 225.266 181.828 125.638 1 48.23 ? CA6 CDL 702 l 1 HETATM 32 O OA8 CDL . . . RA 31 223.896 182.156 125.759 1 54.66 ? OA8 CDL 702 l 1 HETATM 33 C CA7 CDL . . . RA 31 223.223 182.421 124.523 1 55.71 ? CA7 CDL 702 l 1 HETATM 34 O OA9 CDL . . . RA 31 222.043 182.487 124.503 1 53.41 ? OA9 CDL 702 l 1 HETATM 35 C C31 CDL . . . RA 31 224.017 182.616 123.218 1 48.46 ? C31 CDL 702 l 1 HETATM 36 C C32 CDL . . . RA 31 223.557 181.66 122.122 1 51.8 ? C32 CDL 702 l 1 HETATM 37 C C33 CDL . . . RA 31 222.935 182.401 120.929 1 48.2 ? C33 CDL 702 l 1 HETATM 38 C C34 CDL . . . RA 31 221.493 182.877 121.222 1 47.61 ? C34 CDL 702 l 1 HETATM 39 C C35 CDL . . . RA 31 220.432 181.88 120.687 1 45.42 ? C35 CDL 702 l 1 HETATM 40 C C36 CDL . . . RA 31 219.059 182.548 120.446 1 44.2 ? C36 CDL 702 l 1 HETATM 41 C C37 CDL . . . RA 31 219.126 183.653 119.379 1 46.74 ? C37 CDL 702 l 1 HETATM 42 C C38 CDL . . . RA 31 218.989 183.093 117.958 1 41.65 ? C38 CDL 702 l 1 HETATM 43 C C39 CDL . . . RA 31 220.321 183.134 117.185 1 44.21 ? C39 CDL 702 l 1 HETATM 44 C C40 CDL . . . RA 31 220.662 181.786 116.514 1 42.77 ? C40 CDL 702 l 1 HETATM 45 C C41 CDL . . . RA 31 221.967 181.873 115.65 1 45.77 ? C41 CDL 702 l 1 HETATM 46 C C42 CDL . . . RA 31 222.551 180.472 115.322 1 46.28 ? C42 CDL 702 l 1 HETATM 47 C C43 CDL . . . RA 31 223.74 180.535 114.322 1 45.82 ? C43 CDL 702 l 1 HETATM 48 C C44 CDL . . . RA 31 224.395 179.145 114.113 1 45.28 ? C44 CDL 702 l 1 HETATM 49 C C45 CDL . . . RA 31 224.86 178.528 115.43 1 48.08 ? C45 CDL 702 l 1 HETATM 50 C C46 CDL . . . RA 31 225.702 177.254 115.224 1 49.17 ? C46 CDL 702 l 1 HETATM 51 C C47 CDL . . . RA 31 225.583 176.292 116.403 1 48.02 ? C47 CDL 702 l 1 HETATM 52 C CB2 CDL . . . RA 31 228.407 179.491 132.226 1 47.05 ? CB2 CDL 702 l 1 HETATM 53 O OB2 CDL . . . RA 31 229.445 180.136 131.501 1 54.11 ? OB2 CDL 702 l 1 HETATM 54 P PB2 CDL . . . RA 31 230.95 179.398 131.457 1 69.79 ? PB2 CDL 702 l 1 HETATM 55 O OB3 CDL . . . RA 31 230.842 178.002 132.038 1 54.01 ? OB3 CDL 702 l 1 HETATM 56 O OB4 CDL . . . RA 31 231.928 180.204 132.277 1 47.18 ? OB4 CDL 702 l 1 HETATM 57 O OB5 CDL . . . RA 31 231.479 179.308 129.868 1 46.97 ? OB5 CDL 702 l 1 HETATM 58 C CB3 CDL . . . RA 31 231.278 178.095 129.154 1 43.3 ? CB3 CDL 702 l 1 HETATM 59 C CB4 CDL . . . RA 31 230.232 178.344 128.057 1 46.36 ? CB4 CDL 702 l 1 HETATM 60 O OB6 CDL . . . RA 31 230.304 179.687 127.644 1 49.34 ? OB6 CDL 702 l 1 HETATM 61 C CB5 CDL . . . RA 31 230.216 179.865 126.234 1 52.53 ? CB5 CDL 702 l 1 HETATM 62 O OB7 CDL . . . RA 31 230.523 178.983 125.506 1 53.8 ? OB7 CDL 702 l 1 HETATM 63 C C51 CDL . . . RA 31 229.717 181.205 125.656 1 48.39 ? C51 CDL 702 l 1 HETATM 64 C C52 CDL . . . RA 31 228.8 181.007 124.437 1 50.47 ? C52 CDL 702 l 1 HETATM 65 C C53 CDL . . . RA 31 229.283 181.786 123.205 1 50.92 ? C53 CDL 702 l 1 HETATM 66 C C54 CDL . . . RA 31 228.498 183.1 123.01 1 47.8 ? C54 CDL 702 l 1 HETATM 67 C C55 CDL . . . RA 31 227.642 183.082 121.735 1 44.91 ? C55 CDL 702 l 1 HETATM 68 C C56 CDL . . . RA 31 226.881 184.418 121.523 1 47.73 ? C56 CDL 702 l 1 HETATM 69 C C57 CDL . . . RA 31 226.674 184.764 120.033 1 48.45 ? C57 CDL 702 l 1 HETATM 70 C C58 CDL . . . RA 31 226.782 183.526 119.108 1 49.18 ? C58 CDL 702 l 1 HETATM 71 C C59 CDL . . . RA 31 225.437 183.188 118.42 1 53.16 ? C59 CDL 702 l 1 HETATM 72 C C60 CDL . . . RA 31 225.519 181.914 117.558 1 51.74 ? C60 CDL 702 l 1 HETATM 73 C C61 CDL . . . RA 31 226.922 181.719 116.924 1 51.75 ? C61 CDL 702 l 1 HETATM 74 C C62 CDL . . . RA 31 226.937 182.025 115.412 1 54.7 ? C62 CDL 702 l 1 HETATM 75 C C63 CDL . . . RA 31 228.101 181.325 114.695 1 50.24 ? C63 CDL 702 l 1 HETATM 76 C C64 CDL . . . RA 31 228.148 181.649 113.194 1 51.06 ? C64 CDL 702 l 1 HETATM 77 C C65 CDL . . . RA 31 229.395 182.436 112.807 1 55.24 ? C65 CDL 702 l 1 HETATM 78 C C66 CDL . . . RA 31 229.395 183.85 113.378 1 49.92 ? C66 CDL 702 l 1 HETATM 79 C CB6 CDL . . . RA 31 228.84 178.051 128.606 1 48.63 ? CB6 CDL 702 l 1 HETATM 80 O OB8 CDL . . . RA 31 227.873 178.633 127.735 1 51.49 ? OB8 CDL 702 l 1 HETATM 81 C CB7 CDL . . . RA 31 226.879 177.733 127.279 1 52.59 ? CB7 CDL 702 l 1 HETATM 82 O OB9 CDL . . . RA 31 226.192 177.161 128.058 1 53.67 ? OB9 CDL 702 l 1 HETATM 83 C C71 CDL . . . RA 31 226.685 177.496 125.763 1 45.97 ? C71 CDL 702 l 1 HETATM 84 C C72 CDL . . . RA 31 225.404 178.157 125.234 1 48.74 ? C72 CDL 702 l 1 HETATM 85 C C73 CDL . . . RA 31 224.582 177.225 124.328 1 52.41 ? C73 CDL 702 l 1 HETATM 86 C C74 CDL . . . RA 31 224.575 177.696 122.865 1 50.3 ? C74 CDL 702 l 1 HETATM 87 C C75 CDL . . . RA 31 225.925 177.419 122.149 1 51.79 ? C75 CDL 702 l 1 HETATM 88 C C76 CDL . . . RA 31 226.527 178.694 121.502 1 49.94 ? C76 CDL 702 l 1 HETATM 89 C C77 CDL . . . RA 31 226.363 178.707 119.953 1 50.87 ? C77 CDL 702 l 1 HETATM 90 C C78 CDL . . . RA 31 227.712 178.713 119.218 1 51.51 ? C78 CDL 702 l 1 HETATM 91 C C79 CDL . . . RA 31 228.649 179.837 119.712 1 53.76 ? C79 CDL 702 l 1 HETATM 92 C C80 CDL . . . RA 31 229.829 180.095 118.739 1 51.88 ? C80 CDL 702 l 1 HETATM 93 C C81 CDL . . . RA 31 230.749 181.218 119.221 1 50.3 ? C81 CDL 702 l 1 HETATM 94 C C82 CDL . . . RA 31 231.883 181.538 118.204 1 50.21 ? C82 CDL 702 l 1 HETATM 95 C C83 CDL . . . RA 31 231.457 182.577 117.149 1 50.17 ? C83 CDL 702 l 1 HETATM 96 C C84 CDL . . . RA 31 231.014 183.916 117.785 1 53.68 ? C84 CDL 702 l 1 HETATM 97 C C85 CDL . . . RA 31 229.96 184.651 116.934 1 52.76 ? C85 CDL 702 l 1 HETATM 98 C C86 CDL . . . RA 31 229.499 185.958 117.582 1 46.98 ? C86 CDL 702 l 1 HETATM 99 C C87 CDL . . . RA 31 228.167 186.448 117.017 1 43.71 ? C87 CDL 702 l 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 298 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 99 #