data_7VY9 # _model_server_result.job_id yrRja2EEc_jcGITnAxlOgw _model_server_result.datetime_utc '2024-12-21 15:48:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"SA","auth_seq_id":703}' # _entry.id 7VY9 # _exptl.entry_id 7VY9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VY9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 EA N N ? 31 FA N N ? 31 IA N N ? 31 LA N N ? 31 PA N N ? 31 RA N N ? 31 SA N N ? 31 VA N N ? 31 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VY9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 31 CDL V 1 201 201 CDL CDL . FA 31 CDL V 1 202 203 CDL CDL . GA 30 PEE W 1 201 202 PEE PEE . HA 32 8Q1 X 1 201 201 8Q1 8Q1 . IA 31 CDL a 1 201 201 CDL CDL . JA 33 PLX a 1 202 101 PLX PLX . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 30 PEE j 1 201 101 PEE PEE . NA 33 PLX j 1 202 202 PLX PLX . OA 33 PLX j 1 203 203 PLX PLX . PA 31 CDL k 1 101 101 CDL CDL . QA 30 PEE l 1 701 207 PEE PEE . RA 31 CDL l 1 702 712 CDL CDL . SA 31 CDL l 1 703 713 CDL CDL . TA 30 PEE l 1 704 719 PEE PEE . UA 30 PEE l 1 705 720 PEE PEE . VA 31 CDL n 1 101 102 CDL CDL . WA 30 PEE r 1 501 202 PEE PEE . XA 33 PLX r 1 502 205 PLX PLX . YA 33 PLX r 1 503 201 PLX PLX . ZA 30 PEE s 1 401 201 PEE PEE . AB 31 CDL s 1 402 201 CDL CDL . BB 30 PEE s 1 403 401 PEE PEE . CB 34 UQ s 1 404 402 UQ UQ . DB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . SA 31 216.371 227.03 141.532 1 66.84 ? C1 CDL 703 l 1 HETATM 2 O O1 CDL . . . SA 31 217.109 227.796 140.627 1 65.8 ? O1 CDL 703 l 1 HETATM 3 C CA2 CDL . . . SA 31 214.872 227.211 141.186 1 62.11 ? CA2 CDL 703 l 1 HETATM 4 O OA2 CDL . . . SA 31 214.747 228.377 140.385 1 63.79 ? OA2 CDL 703 l 1 HETATM 5 P PA1 CDL . . . SA 31 213.228 228.903 139.982 1 78.94 ? PA1 CDL 703 l 1 HETATM 6 O OA3 CDL . . . SA 31 212.351 227.715 139.676 1 64.46 ? OA3 CDL 703 l 1 HETATM 7 O OA4 CDL . . . SA 31 212.646 229.671 141.131 1 68.41 ? OA4 CDL 703 l 1 HETATM 8 O OA5 CDL . . . SA 31 213.319 229.885 138.645 1 64.51 ? OA5 CDL 703 l 1 HETATM 9 C CA3 CDL . . . SA 31 212.347 229.742 137.621 1 64.67 ? CA3 CDL 703 l 1 HETATM 10 C CA4 CDL . . . SA 31 212.207 231.075 136.898 1 68.53 ? CA4 CDL 703 l 1 HETATM 11 O OA6 CDL . . . SA 31 212.102 230.861 135.515 1 69.08 ? OA6 CDL 703 l 1 HETATM 12 C CA5 CDL . . . SA 31 210.77 230.876 135.019 1 62.68 ? CA5 CDL 703 l 1 HETATM 13 O OA7 CDL . . . SA 31 209.849 230.891 135.776 1 62.46 ? OA7 CDL 703 l 1 HETATM 14 C C11 CDL . . . SA 31 210.511 230.882 133.48 1 63.38 ? C11 CDL 703 l 1 HETATM 15 C C12 CDL . . . SA 31 211.812 231.029 132.682 1 64.61 ? C12 CDL 703 l 1 HETATM 16 C C13 CDL . . . SA 31 211.605 230.953 131.17 1 65.79 ? C13 CDL 703 l 1 HETATM 17 C C14 CDL . . . SA 31 210.503 229.955 130.766 1 64.12 ? C14 CDL 703 l 1 HETATM 18 C C15 CDL . . . SA 31 209.848 230.325 129.404 1 63.51 ? C15 CDL 703 l 1 HETATM 19 C C16 CDL . . . SA 31 208.77 229.302 128.966 1 63.65 ? C16 CDL 703 l 1 HETATM 20 C C17 CDL . . . SA 31 207.348 229.68 129.484 1 63.2 ? C17 CDL 703 l 1 HETATM 21 C C18 CDL . . . SA 31 206.954 228.882 130.753 1 62.52 ? C18 CDL 703 l 1 HETATM 22 C C19 CDL . . . SA 31 205.697 229.466 131.46 1 61.7 ? C19 CDL 703 l 1 HETATM 23 C C20 CDL . . . SA 31 204.376 229.037 130.775 1 65.14 ? C20 CDL 703 l 1 HETATM 24 C C21 CDL . . . SA 31 203.14 229.748 131.388 1 65.78 ? C21 CDL 703 l 1 HETATM 25 C C22 CDL . . . SA 31 201.848 229.514 130.554 1 65.29 ? C22 CDL 703 l 1 HETATM 26 C C23 CDL . . . SA 31 200.584 230.043 131.271 1 66.75 ? C23 CDL 703 l 1 HETATM 27 C C24 CDL . . . SA 31 199.311 229.236 130.902 1 63.03 ? C24 CDL 703 l 1 HETATM 28 C C25 CDL . . . SA 31 199.017 229.265 129.392 1 64.3 ? C25 CDL 703 l 1 HETATM 29 C C26 CDL . . . SA 31 197.794 228.397 129.015 1 64.34 ? C26 CDL 703 l 1 HETATM 30 C C27 CDL . . . SA 31 197.707 228.135 127.508 1 63.35 ? C27 CDL 703 l 1 HETATM 31 C CA6 CDL . . . SA 31 213.441 231.952 137.189 1 64.93 ? CA6 CDL 703 l 1 HETATM 32 O OA8 CDL . . . SA 31 214.272 231.956 136.045 1 68.03 ? OA8 CDL 703 l 1 HETATM 33 C CA7 CDL . . . SA 31 215.3 230.961 136.068 1 68.89 ? CA7 CDL 703 l 1 HETATM 34 O OA9 CDL . . . SA 31 215.566 230.409 137.077 1 66.28 ? OA9 CDL 703 l 1 HETATM 35 C C31 CDL . . . SA 31 216.069 230.615 134.778 1 66.83 ? C31 CDL 703 l 1 HETATM 36 C C32 CDL . . . SA 31 215.942 231.703 133.715 1 64.02 ? C32 CDL 703 l 1 HETATM 37 C C33 CDL . . . SA 31 215.425 231.155 132.377 1 64.32 ? C33 CDL 703 l 1 HETATM 38 C C34 CDL . . . SA 31 216.08 231.858 131.165 1 62.01 ? C34 CDL 703 l 1 HETATM 39 C C35 CDL . . . SA 31 215.048 232.274 130.083 1 63.43 ? C35 CDL 703 l 1 HETATM 40 C C36 CDL . . . SA 31 214.496 233.701 130.311 1 65.23 ? C36 CDL 703 l 1 HETATM 41 C C37 CDL . . . SA 31 214.866 234.679 129.181 1 66.31 ? C37 CDL 703 l 1 HETATM 42 C C38 CDL . . . SA 31 216.178 234.309 128.477 1 63.76 ? C38 CDL 703 l 1 HETATM 43 C C39 CDL . . . SA 31 216.719 235.452 127.598 1 61.85 ? C39 CDL 703 l 1 HETATM 44 C C40 CDL . . . SA 31 215.746 235.835 126.459 1 62.51 ? C40 CDL 703 l 1 HETATM 45 C C41 CDL . . . SA 31 216.506 236.225 125.145 1 63.58 ? C41 CDL 703 l 1 HETATM 46 C C42 CDL . . . SA 31 215.734 237.269 124.293 1 64.95 ? C42 CDL 703 l 1 HETATM 47 C C43 CDL . . . SA 31 216.24 237.309 122.821 1 65.59 ? C43 CDL 703 l 1 HETATM 48 C C44 CDL . . . SA 31 217.788 237.225 122.74 1 67.15 ? C44 CDL 703 l 1 HETATM 49 C C45 CDL . . . SA 31 218.289 236.978 121.319 1 66.75 ? C45 CDL 703 l 1 HETATM 50 C C46 CDL . . . SA 31 218.689 238.282 120.604 1 66.38 ? C46 CDL 703 l 1 HETATM 51 C C47 CDL . . . SA 31 220.071 238.771 121.029 1 64.31 ? C47 CDL 703 l 1 HETATM 52 C CB2 CDL . . . SA 31 216.847 225.541 141.404 1 62.86 ? CB2 CDL 703 l 1 HETATM 53 O OB2 CDL . . . SA 31 218.268 225.517 141.451 1 63.79 ? OB2 CDL 703 l 1 HETATM 54 P PB2 CDL . . . SA 31 219.098 224.801 140.18 1 69.78 ? PB2 CDL 703 l 1 HETATM 55 O OB3 CDL . . . SA 31 220.537 224.55 140.591 1 65.19 ? OB3 CDL 703 l 1 HETATM 56 O OB4 CDL . . . SA 31 218.445 223.488 139.824 1 62.02 ? OB4 CDL 703 l 1 HETATM 57 O OB5 CDL . . . SA 31 219.064 225.819 138.849 1 63.63 ? OB5 CDL 703 l 1 HETATM 58 C CB3 CDL . . . SA 31 217.985 225.693 137.931 1 58.93 ? CB3 CDL 703 l 1 HETATM 59 C CB4 CDL . . . SA 31 218.558 225.644 136.508 1 60.23 ? CB4 CDL 703 l 1 HETATM 60 O OB6 CDL . . . SA 31 219.427 226.731 136.309 1 62.92 ? OB6 CDL 703 l 1 HETATM 61 C CB5 CDL . . . SA 31 220.221 226.614 135.133 1 63.18 ? CB5 CDL 703 l 1 HETATM 62 O OB7 CDL . . . SA 31 220.671 225.561 134.826 1 64.41 ? OB7 CDL 703 l 1 HETATM 63 C C51 CDL . . . SA 31 220.493 227.851 134.254 1 62.11 ? C51 CDL 703 l 1 HETATM 64 C C52 CDL . . . SA 31 219.285 228.229 133.38 1 57.62 ? C52 CDL 703 l 1 HETATM 65 C C53 CDL . . . SA 31 219.441 227.73 131.936 1 58.26 ? C53 CDL 703 l 1 HETATM 66 C C54 CDL . . . SA 31 219.188 228.846 130.9 1 60 ? C54 CDL 703 l 1 HETATM 67 C C55 CDL . . . SA 31 220.26 228.868 129.799 1 62.35 ? C55 CDL 703 l 1 HETATM 68 C C56 CDL . . . SA 31 220.155 230.121 128.891 1 61.98 ? C56 CDL 703 l 1 HETATM 69 C C57 CDL . . . SA 31 219.213 229.896 127.691 1 60.17 ? C57 CDL 703 l 1 HETATM 70 C C58 CDL . . . SA 31 217.819 230.528 127.926 1 61.79 ? C58 CDL 703 l 1 HETATM 71 C C59 CDL . . . SA 31 216.769 230.056 126.891 1 65.24 ? C59 CDL 703 l 1 HETATM 72 C C60 CDL . . . SA 31 216.563 231.082 125.761 1 65.81 ? C60 CDL 703 l 1 HETATM 73 C C61 CDL . . . SA 31 217.547 230.863 124.581 1 63.88 ? C61 CDL 703 l 1 HETATM 74 C C62 CDL . . . SA 31 218.661 231.931 124.533 1 61.78 ? C62 CDL 703 l 1 HETATM 75 C C63 CDL . . . SA 31 219.105 232.23 123.094 1 63.15 ? C63 CDL 703 l 1 HETATM 76 C C64 CDL . . . SA 31 217.919 232.636 122.207 1 63.44 ? C64 CDL 703 l 1 HETATM 77 C C65 CDL . . . SA 31 217.933 231.935 120.854 1 62.13 ? C65 CDL 703 l 1 HETATM 78 C C66 CDL . . . SA 31 216.544 231.879 120.228 1 62.89 ? C66 CDL 703 l 1 HETATM 79 C C67 CDL . . . SA 31 216.46 232.677 118.928 1 60 ? C67 CDL 703 l 1 HETATM 80 C CB6 CDL . . . SA 31 217.425 225.727 135.493 1 62.6 ? CB6 CDL 703 l 1 HETATM 81 O OB8 CDL . . . SA 31 216.318 226.4 136.085 1 63.87 ? OB8 CDL 703 l 1 HETATM 82 C CB7 CDL . . . SA 31 215.098 226.167 135.404 1 63.94 ? CB7 CDL 703 l 1 HETATM 83 O OB9 CDL . . . SA 31 214.551 225.121 135.508 1 61.92 ? OB9 CDL 703 l 1 HETATM 84 C C71 CDL . . . SA 31 214.48 227.273 134.519 1 64.71 ? C71 CDL 703 l 1 HETATM 85 C C72 CDL . . . SA 31 214.942 227.166 133.059 1 64.94 ? C72 CDL 703 l 1 HETATM 86 C C73 CDL . . . SA 31 213.851 226.584 132.146 1 63.18 ? C73 CDL 703 l 1 HETATM 87 C C74 CDL . . . SA 31 213.442 227.559 131.032 1 63.09 ? C74 CDL 703 l 1 HETATM 88 C C75 CDL . . . SA 31 214.56 227.754 129.973 1 61.49 ? C75 CDL 703 l 1 HETATM 89 C C76 CDL . . . SA 31 214.071 228.577 128.755 1 63.88 ? C76 CDL 703 l 1 HETATM 90 C C77 CDL . . . SA 31 213.766 227.684 127.516 1 62.32 ? C77 CDL 703 l 1 HETATM 91 C C78 CDL . . . SA 31 212.354 227.928 126.967 1 63.43 ? C78 CDL 703 l 1 HETATM 92 C C79 CDL . . . SA 31 211.904 226.845 125.964 1 60.66 ? C79 CDL 703 l 1 HETATM 93 C C80 CDL . . . SA 31 210.376 226.595 126.047 1 63.93 ? C80 CDL 703 l 1 HETATM 94 C C81 CDL . . . SA 31 209.749 226.265 124.693 1 61.11 ? C81 CDL 703 l 1 HETATM 95 C C82 CDL . . . SA 31 208.2 226.412 124.725 1 62.05 ? C82 CDL 703 l 1 HETATM 96 C C83 CDL . . . SA 31 207.553 225.549 125.826 1 62.1 ? C83 CDL 703 l 1 HETATM 97 C C84 CDL . . . SA 31 206.03 225.796 125.95 1 62.19 ? C84 CDL 703 l 1 HETATM 98 C C85 CDL . . . SA 31 205.536 225.705 127.407 1 63.36 ? C85 CDL 703 l 1 HETATM 99 C C86 CDL . . . SA 31 204.038 225.997 127.535 1 65.1 ? C86 CDL 703 l 1 HETATM 100 C C87 CDL . . . SA 31 203.188 224.73 127.462 1 61.59 ? C87 CDL 703 l 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 80 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 100 #