data_7VYA # _model_server_result.job_id 2sQNfJbRNGEnRj2leKptUQ _model_server_result.datetime_utc '2024-12-21 16:42:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":401}' # _entry.id 7VYA # _exptl.entry_id 7VYA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 24 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 24 _struct_asym.id AA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 11 F CYS 24 1_555 E SG CYS 45 F CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 F CB SER 44 G SER 112 1_555 Z O1 8Q1 . G 8Q1 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.513 ? covale ? covale2 P C HIS 39 Q HIS 117 1_555 P N 2MR 40 Q 2MR 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 P C 2MR 40 Q 2MR 118 1_555 P N GLY 41 Q GLY 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A SG CYS 352 A CYS 379 1_555 S FE4 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 A SG CYS 355 A CYS 382 1_555 S FE1 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc3 A SG CYS 358 A CYS 385 1_555 S FE3 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc4 A SG CYS 398 A CYS 425 1_555 S FE2 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc5 B SG CYS 77 B CYS 113 1_555 V FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 B SG CYS 80 B CYS 116 1_555 V FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc7 B SG CYS 83 B CYS 119 1_555 V FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc8 B SG CYS 87 B CYS 123 1_555 W FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc9 B SG CYS 116 B CYS 152 1_555 W FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc10 B SG CYS 119 B CYS 155 1_555 W FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc11 B SG CYS 122 B CYS 158 1_555 W FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc12 B SG CYS 126 B CYS 162 1_555 V FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc13 C SG CYS 31 C CYS 71 1_555 X FE3 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc14 C SG CYS 32 C CYS 72 1_555 X FE2 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc15 C SG CYS 96 C CYS 136 1_555 X FE4 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc16 C SG CYS 126 C CYS 166 1_555 X FE1 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc17 L SG CYS 36 M CYS 64 1_555 DA FE2 FES . M FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc18 L SG CYS 47 M CYS 75 1_555 DA FE2 FES . M FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc19 L SG CYS 50 M CYS 78 1_555 DA FE1 FES . M FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc20 L SG CYS 64 M CYS 92 1_555 DA FE1 FES . M FES 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc21 L NE2 HIS 96 M HIS 124 1_555 BA FE3 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc22 L SG CYS 100 M CYS 128 1_555 BA FE2 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc23 L SG CYS 103 M CYS 131 1_555 BA FE1 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc24 L OE1 GLN 105 M GLN 133 1_555 EA MG MG . M MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc25 L SG CYS 109 M CYS 137 1_555 BA FE4 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc26 L SG CYS 148 M CYS 176 1_555 CA FE4 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc27 L SG CYS 151 M CYS 179 1_555 CA FE1 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc28 L SG CYS 154 M CYS 182 1_555 CA FE3 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc29 L SG CYS 198 M CYS 226 1_555 CA FE2 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc30 L O CYS 198 M CYS 226 1_555 EA MG MG . M MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc31 L O VAL 200 M VAL 228 1_555 EA MG MG . M MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc32 L O LEU 203 M LEU 231 1_555 EA MG MG . M MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc33 N SG CYS 103 O CYS 135 1_555 HA FE1 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc34 N SG CYS 108 O CYS 140 1_555 HA FE1 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc35 N SG CYS 144 O CYS 176 1_555 HA FE2 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc36 N SG CYS 148 O CYS 180 1_555 HA FE2 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc37 Q SG CYS 59 T CYS 86 1_555 IA ZN ZN . T ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc38 Q NE2 HIS 68 T HIS 95 1_555 IA ZN ZN . T ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc39 Q SG CYS 84 T CYS 111 1_555 IA ZN ZN . T ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VYA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 19 SF4 A 1 501 501 SF4 SF4 . T 20 FMN A 1 502 502 FMN FMN . U 21 NAI A 1 503 503 NAI NAI . V 19 SF4 B 1 301 301 SF4 SF4 . W 19 SF4 B 1 302 302 SF4 SF4 . X 19 SF4 C 1 301 301 SF4 SF4 . Y 22 PEE C 1 302 311 PEE PEE . Z 23 8Q1 G 1 201 201 8Q1 8Q1 . AA 24 NDP J 1 401 401 NDP NDP . BA 19 SF4 M 1 801 801 SF4 SF4 . CA 19 SF4 M 1 802 802 SF4 SF4 . DA 25 FES M 1 803 803 FES FES . EA 26 MG M 1 804 805 MG MG . FA 27 PLX N 1 201 312 PLX PLX . GA 28 CDL N 1 202 202 CDL CDL . HA 25 FES O 1 301 301 FES FES . IA 29 ZN T 1 201 150 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . AA 24 99.963 154.656 170.94 1 32.13 ? PA NDP 401 J 1 HETATM 2 O O1A NDP . . . AA 24 99.528 154.84 169.516 1 32.13 ? O1A NDP 401 J 1 HETATM 3 O O2A NDP . . . AA 24 101.358 154.092 170.961 1 32.13 ? O2A NDP 401 J 1 HETATM 4 O O5B NDP . . . AA 24 98.897 153.626 171.707 1 32.13 ? O5B NDP 401 J 1 HETATM 5 C C5B NDP . . . AA 24 97.537 154.064 171.829 1 32.13 ? C5B NDP 401 J 1 HETATM 6 C C4B NDP . . . AA 24 96.943 153.386 173.062 1 32.13 ? C4B NDP 401 J 1 HETATM 7 O O4B NDP . . . AA 24 95.734 153.734 173.224 1 32.13 ? O4B NDP 401 J 1 HETATM 8 C C3B NDP . . . AA 24 96.932 151.744 172.844 1 32.13 ? C3B NDP 401 J 1 HETATM 9 O O3B NDP . . . AA 24 96.836 151.14 174.17 1 32.13 ? O3B NDP 401 J 1 HETATM 10 C C2B NDP . . . AA 24 95.901 151.565 172.179 1 32.13 ? C2B NDP 401 J 1 HETATM 11 O O2B NDP . . . AA 24 95.432 150.112 172.195 1 32.13 ? O2B NDP 401 J 1 HETATM 12 C C1B NDP . . . AA 24 94.885 152.508 172.901 1 32.13 ? C1B NDP 401 J 1 HETATM 13 N N9A NDP . . . AA 24 93.884 152.858 172.097 1 32.13 ? N9A NDP 401 J 1 HETATM 14 C C8A NDP . . . AA 24 93.978 153.645 171.048 1 32.13 ? C8A NDP 401 J 1 HETATM 15 N N7A NDP . . . AA 24 92.779 153.782 170.488 1 32.13 ? N7A NDP 401 J 1 HETATM 16 C C5A NDP . . . AA 24 91.905 153.075 171.195 1 32.13 ? C5A NDP 401 J 1 HETATM 17 C C6A NDP . . . AA 24 90.518 152.835 171.096 1 32.13 ? C6A NDP 401 J 1 HETATM 18 N N6A NDP . . . AA 24 89.728 153.453 170.001 1 32.13 ? N6A NDP 401 J 1 HETATM 19 N N1A NDP . . . AA 24 89.937 152.058 171.99 1 32.13 ? N1A NDP 401 J 1 HETATM 20 C C2A NDP . . . AA 24 90.654 151.508 172.97 1 32.13 ? C2A NDP 401 J 1 HETATM 21 N N3A NDP . . . AA 24 91.954 151.709 173.093 1 32.13 ? N3A NDP 401 J 1 HETATM 22 C C4A NDP . . . AA 24 92.607 152.484 172.227 1 32.13 ? C4A NDP 401 J 1 HETATM 23 O O3 NDP . . . AA 24 99.955 156.103 171.726 1 32.13 ? O3 NDP 401 J 1 HETATM 24 P PN NDP . . . AA 24 101.243 156.66 172.608 1 32.13 ? PN NDP 401 J 1 HETATM 25 O O1N NDP . . . AA 24 101.969 155.493 173.23 1 32.13 ? O1N NDP 401 J 1 HETATM 26 O O2N NDP . . . AA 24 102.202 157.395 171.695 1 32.13 ? O2N NDP 401 J 1 HETATM 27 O O5D NDP . . . AA 24 100.712 157.686 173.796 1 32.13 ? O5D NDP 401 J 1 HETATM 28 C C5D NDP . . . AA 24 99.392 157.56 174.279 1 32.13 ? C5D NDP 401 J 1 HETATM 29 C C4D NDP . . . AA 24 98.786 158.928 174.432 1 32.13 ? C4D NDP 401 J 1 HETATM 30 O O4D NDP . . . AA 24 99.963 160.13 174.441 1 32.13 ? O4D NDP 401 J 1 HETATM 31 C C3D NDP . . . AA 24 97.988 159.163 173.471 1 32.13 ? C3D NDP 401 J 1 HETATM 32 O O3D NDP . . . AA 24 96.584 159.234 173.989 1 32.13 ? O3D NDP 401 J 1 HETATM 33 C C2D NDP . . . AA 24 98.441 160.551 172.823 1 32.13 ? C2D NDP 401 J 1 HETATM 34 O O2D NDP . . . AA 24 97.406 161.372 172.683 1 32.13 ? O2D NDP 401 J 1 HETATM 35 C C1D NDP . . . AA 24 99.457 161.153 173.823 1 32.13 ? C1D NDP 401 J 1 HETATM 36 N N1N NDP . . . AA 24 100.528 161.917 173.1 1 32.13 ? N1N NDP 401 J 1 HETATM 37 C C2N NDP . . . AA 24 101.475 160.963 172.447 1 32.13 ? C2N NDP 401 J 1 HETATM 38 C C3N NDP . . . AA 24 102.925 161.513 172.421 1 32.13 ? C3N NDP 401 J 1 HETATM 39 C C7N NDP . . . AA 24 103.697 160.824 171.275 1 32.13 ? C7N NDP 401 J 1 HETATM 40 O O7N NDP . . . AA 24 104.232 159.78 171.462 1 32.13 ? O7N NDP 401 J 1 HETATM 41 N N7N NDP . . . AA 24 103.771 161.448 169.979 1 32.13 ? N7N NDP 401 J 1 HETATM 42 C C4N NDP . . . AA 24 102.957 162.982 172.215 1 32.13 ? C4N NDP 401 J 1 HETATM 43 C C5N NDP . . . AA 24 102.282 163.708 173.345 1 32.13 ? C5N NDP 401 J 1 HETATM 44 C C6N NDP . . . AA 24 101.219 162.83 174.053 1 32.13 ? C6N NDP 401 J 1 HETATM 45 P P2B NDP . . . AA 24 95.459 149.251 170.741 1 32.13 ? P2B NDP 401 J 1 HETATM 46 O O1X NDP . . . AA 24 94.854 147.883 170.962 1 32.13 ? O1X NDP 401 J 1 HETATM 47 O O2X NDP . . . AA 24 94.654 149.988 169.703 1 32.13 ? O2X NDP 401 J 1 HETATM 48 O O3X NDP . . . AA 24 96.891 149.113 170.278 1 32.13 ? O3X NDP 401 J 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #