data_7VYE # _model_server_result.job_id Rzr2Pk6Ecnj20wnLhSXT0w _model_server_result.datetime_utc '2024-12-21 17:25:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":201}' # _entry.id 7VYE # _exptl.entry_id 7VYE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 JA N N ? 30 NA N N ? 30 RA N N ? 30 TA N N ? 30 VA N N ? 30 WA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? disulf ? disulf5 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 7VYE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE U 1 101 101 PEE PEE . EA 30 PEE V 1 201 207 PEE PEE . FA 31 CDL V 1 202 201 CDL CDL . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 31 CDL a 1 201 201 CDL CDL . IA 33 PLX a 1 202 101 PLX PLX . JA 30 PEE b 1 201 720 PEE PEE . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 31 CDL i 1 401 401 CDL CDL . NA 30 PEE i 1 402 718 PEE PEE . OA 33 PLX j 1 201 203 PLX PLX . PA 31 CDL l 1 701 712 CDL CDL . QA 31 CDL l 1 702 713 CDL CDL . RA 30 PEE l 1 703 719 PEE PEE . SA 31 CDL o 1 201 203 CDL CDL . TA 30 PEE r 1 501 202 PEE PEE . UA 33 PLX r 1 502 201 PLX PLX . VA 30 PEE s 1 401 202 PEE PEE . WA 30 PEE s 1 402 401 PEE PEE . XA 34 UQ s 1 403 403 UQ UQ . YA 31 CDL u 1 201 102 CDL CDL . ZA 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 PEE . . . EA 30 162.187 167.103 122.254 1 43.83 ? C21 PEE 201 V 1 HETATM 2 C C20 PEE . . . EA 30 162.52 167.807 123.57 1 43.83 ? C20 PEE 201 V 1 HETATM 3 C C19 PEE . . . EA 30 163.859 168.544 123.512 1 43.83 ? C19 PEE 201 V 1 HETATM 4 C C18 PEE . . . EA 30 163.815 169.879 124.257 1 43.83 ? C18 PEE 201 V 1 HETATM 5 C C17 PEE . . . EA 30 163.554 169.7 125.754 1 43.83 ? C17 PEE 201 V 1 HETATM 6 C C16 PEE . . . EA 30 163.734 171.005 126.529 1 43.83 ? C16 PEE 201 V 1 HETATM 7 C C15 PEE . . . EA 30 163.992 170.76 128.015 1 43.83 ? C15 PEE 201 V 1 HETATM 8 C C14 PEE . . . EA 30 164.687 171.951 128.679 1 43.83 ? C14 PEE 201 V 1 HETATM 9 C C13 PEE . . . EA 30 165.483 171.537 129.922 1 43.83 ? C13 PEE 201 V 1 HETATM 10 C C12 PEE . . . EA 30 165.689 172.703 130.896 1 43.83 ? C12 PEE 201 V 1 HETATM 11 C C11 PEE . . . EA 30 164.515 173.687 130.871 1 43.83 ? C11 PEE 201 V 1 HETATM 12 C C10 PEE . . . EA 30 163.931 173.924 132.268 1 43.83 ? C10 PEE 201 V 1 HETATM 13 O O4 PEE . . . EA 30 162.785 173.71 132.47 1 43.83 ? O4 PEE 201 V 1 HETATM 14 O O2 PEE . . . EA 30 164.756 174.397 133.299 1 43.83 ? O2 PEE 201 V 1 HETATM 15 C C2 PEE . . . EA 30 164.831 175.797 133.377 1 43.83 ? C2 PEE 201 V 1 HETATM 16 C C1 PEE . . . EA 30 164.113 176.326 134.623 1 43.83 ? C1 PEE 201 V 1 HETATM 17 O O3P PEE . . . EA 30 164.229 175.405 135.677 1 43.83 ? O3P PEE 201 V 1 HETATM 18 P P PEE . . . EA 30 162.953 174.399 135.991 1 43.83 ? P PEE 201 V 1 HETATM 19 O O2P PEE . . . EA 30 162.944 174.039 137.459 1 43.83 ? O2P PEE 201 V 1 HETATM 20 O O1P PEE . . . EA 30 163.093 173.139 135.172 1 43.83 ? O1P PEE 201 V 1 HETATM 21 O O4P PEE . . . EA 30 161.531 175.154 135.61 1 43.83 ? O4P PEE 201 V 1 HETATM 22 C C4 PEE . . . EA 30 161.353 175.667 134.314 1 43.83 ? C4 PEE 201 V 1 HETATM 23 C C5 PEE . . . EA 30 159.897 176.112 134.176 1 43.83 ? C5 PEE 201 V 1 HETATM 24 N N PEE . . . EA 30 159.617 177.209 135.084 1 43.83 ? N PEE 201 V 1 HETATM 25 C C3 PEE . . . EA 30 166.288 176.253 133.393 1 43.83 ? C3 PEE 201 V 1 HETATM 26 O O3 PEE . . . EA 30 166.874 175.95 132.158 1 43.83 ? O3 PEE 201 V 1 HETATM 27 C C30 PEE . . . EA 30 167.433 177.054 131.501 1 43.83 ? C30 PEE 201 V 1 HETATM 28 O O5 PEE . . . EA 30 167.977 177.897 132.127 1 43.83 ? O5 PEE 201 V 1 HETATM 29 C C31 PEE . . . EA 30 167.346 177.168 129.978 1 43.83 ? C31 PEE 201 V 1 HETATM 30 C C32 PEE . . . EA 30 168.27 176.183 129.256 1 43.83 ? C32 PEE 201 V 1 HETATM 31 C C33 PEE . . . EA 30 167.993 176.15 127.75 1 43.83 ? C33 PEE 201 V 1 HETATM 32 C C34 PEE . . . EA 30 166.89 175.155 127.371 1 43.83 ? C34 PEE 201 V 1 HETATM 33 C C35 PEE . . . EA 30 165.847 175.775 126.434 1 43.83 ? C35 PEE 201 V 1 HETATM 34 C C36 PEE . . . EA 30 165.437 174.839 125.293 1 43.83 ? C36 PEE 201 V 1 HETATM 35 C C37 PEE . . . EA 30 164.225 175.369 124.523 1 43.83 ? C37 PEE 201 V 1 HETATM 36 C C38 PEE . . . EA 30 164.402 175.285 123.007 1 43.83 ? C38 PEE 201 V 1 HETATM 37 C C39 PEE . . . EA 30 163.62 174.135 122.384 1 43.83 ? C39 PEE 201 V 1 HETATM 38 C C40 PEE . . . EA 30 164.229 173.676 121.062 1 43.83 ? C40 PEE 201 V 1 HETATM 39 C C41 PEE . . . EA 30 163.452 172.527 120.431 1 43.83 ? C41 PEE 201 V 1 HETATM 40 C C42 PEE . . . EA 30 164.274 171.761 119.401 1 43.83 ? C42 PEE 201 V 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 88 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 40 #