data_7VYE
#
_model_server_result.job_id            NH8HM751TvrEakgAleiUUw 
_model_server_result.datetime_utc      '2024-12-21 17:25:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vye 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"HA","auth_seq_id":201}' 
#
_entry.id    7VYE 
#
_exptl.entry_id    7VYE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VYE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 31 FA N N 
? 31 HA N N 
? 31 LA N N 
? 31 MA N N 
? 31 PA N N 
? 31 QA N N 
? 31 SA N N 
? 31 YA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
disulf ? disulf5 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VYE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 101 101 PEE PEE . 
EA 30 PEE V 1 201 207 PEE PEE . 
FA 31 CDL V 1 202 201 CDL CDL . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 31 CDL a 1 201 201 CDL CDL . 
IA 33 PLX a 1 202 101 PLX PLX . 
JA 30 PEE b 1 201 720 PEE PEE . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 30 PEE i 1 402 718 PEE PEE . 
OA 33 PLX j 1 201 203 PLX PLX . 
PA 31 CDL l 1 701 712 CDL CDL . 
QA 31 CDL l 1 702 713 CDL CDL . 
RA 30 PEE l 1 703 719 PEE PEE . 
SA 31 CDL o 1 201 203 CDL CDL . 
TA 30 PEE r 1 501 202 PEE PEE . 
UA 33 PLX r 1 502 201 PLX PLX . 
VA 30 PEE s 1 401 202 PEE PEE . 
WA 30 PEE s 1 402 401 PEE PEE . 
XA 34 UQ s 1 403 403 UQ UQ . 
YA 31 CDL u 1 201 102 CDL CDL . 
ZA 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . HA 31 231.21 164.842 95.113 1 74.84 ? C1 CDL 201 a 1 
HETATM 2 O O1 CDL . . . HA 31 230.303 164.114 94.281 1 74.84 ? O1 CDL 201 a 1 
HETATM 3 C CA2 CDL . . . HA 31 232.516 164.073 95.259 1 74.84 ? CA2 CDL 201 a 1 
HETATM 4 O OA2 CDL . . . HA 31 233.537 164.959 95.713 1 74.84 ? OA2 CDL 201 a 1 
HETATM 5 P PA1 CDL . . . HA 31 235.092 164.562 95.608 1 74.84 ? PA1 CDL 201 a 1 
HETATM 6 O OA3 CDL . . . HA 31 235.196 163.07 95.42 1 74.84 ? OA3 CDL 201 a 1 
HETATM 7 O OA4 CDL . . . HA 31 235.752 165.502 94.633 1 74.84 ? OA4 CDL 201 a 1 
HETATM 8 O OA5 CDL . . . HA 31 235.612 164.917 97.082 1 74.84 ? OA5 CDL 201 a 1 
HETATM 9 C CA3 CDL . . . HA 31 236.813 164.345 97.591 1 74.84 ? CA3 CDL 201 a 1 
HETATM 10 C CA4 CDL . . . HA 31 236.554 163.66 98.93 1 74.84 ? CA4 CDL 201 a 1 
HETATM 11 O OA6 CDL . . . HA 31 235.514 164.327 99.645 1 74.84 ? OA6 CDL 201 a 1 
HETATM 12 C CA5 CDL . . . HA 31 235.302 163.824 100.992 1 74.84 ? CA5 CDL 201 a 1 
HETATM 13 O OA7 CDL . . . HA 31 235.871 162.812 101.359 1 74.84 ? OA7 CDL 201 a 1 
HETATM 14 C C11 CDL . . . HA 31 234.366 164.56 101.92 1 74.84 ? C11 CDL 201 a 1 
HETATM 15 C C12 CDL . . . HA 31 234.26 163.808 103.237 1 74.84 ? C12 CDL 201 a 1 
HETATM 16 C C13 CDL . . . HA 31 232.942 164.122 103.933 1 74.84 ? C13 CDL 201 a 1 
HETATM 17 C C14 CDL . . . HA 31 232.841 163.358 105.245 1 74.84 ? C14 CDL 201 a 1 
HETATM 18 C C15 CDL . . . HA 31 231.399 163.275 105.727 1 74.84 ? C15 CDL 201 a 1 
HETATM 19 C C16 CDL . . . HA 31 231.33 162.502 107.037 1 74.84 ? C16 CDL 201 a 1 
HETATM 20 C C17 CDL . . . HA 31 229.897 162.342 107.528 1 74.84 ? C17 CDL 201 a 1 
HETATM 21 C C18 CDL . . . HA 31 229.89 161.642 108.88 1 74.84 ? C18 CDL 201 a 1 
HETATM 22 C C19 CDL . . . HA 31 228.474 161.409 109.386 1 74.84 ? C19 CDL 201 a 1 
HETATM 23 C C20 CDL . . . HA 31 228.473 161.308 110.904 1 74.84 ? C20 CDL 201 a 1 
HETATM 24 C C21 CDL . . . HA 31 229.229 162.483 111.511 1 74.84 ? C21 CDL 201 a 1 
HETATM 25 C C22 CDL . . . HA 31 229.23 162.41 113.032 1 74.84 ? C22 CDL 201 a 1 
HETATM 26 C C23 CDL . . . HA 31 230.183 163.437 113.633 1 74.84 ? C23 CDL 201 a 1 
HETATM 27 C C24 CDL . . . HA 31 231.636 163.003 113.481 1 74.84 ? C24 CDL 201 a 1 
HETATM 28 C C25 CDL . . . HA 31 232.149 163.297 112.078 1 74.84 ? C25 CDL 201 a 1 
HETATM 29 C C26 CDL . . . HA 31 233.64 163.002 111.972 1 74.84 ? C26 CDL 201 a 1 
HETATM 30 C C27 CDL . . . HA 31 234.442 163.906 112.882 1 74.84 ? C27 CDL 201 a 1 
HETATM 31 C CA6 CDL . . . HA 31 237.846 163.694 99.737 1 74.84 ? CA6 CDL 201 a 1 
HETATM 32 O OA8 CDL . . . HA 31 238.534 164.922 99.505 1 74.84 ? OA8 CDL 201 a 1 
HETATM 33 C CA7 CDL . . . HA 31 239.862 165.114 100.065 1 74.84 ? CA7 CDL 201 a 1 
HETATM 34 O OA9 CDL . . . HA 31 240.312 164.262 100.813 1 74.84 ? OA9 CDL 201 a 1 
HETATM 35 C C31 CDL . . . HA 31 240.679 166.338 99.73 1 74.84 ? C31 CDL 201 a 1 
HETATM 36 C C32 CDL . . . HA 31 239.832 167.59 99.902 1 74.84 ? C32 CDL 201 a 1 
HETATM 37 C C33 CDL . . . HA 31 240.695 168.768 100.333 1 74.84 ? C33 CDL 201 a 1 
HETATM 38 C C34 CDL . . . HA 31 242.102 168.655 99.761 1 74.84 ? C34 CDL 201 a 1 
HETATM 39 C C35 CDL . . . HA 31 242.93 169.885 100.11 1 74.84 ? C35 CDL 201 a 1 
HETATM 40 C C36 CDL . . . HA 31 244.378 169.709 99.676 1 74.84 ? C36 CDL 201 a 1 
HETATM 41 C C37 CDL . . . HA 31 245.057 168.603 100.475 1 74.84 ? C37 CDL 201 a 1 
HETATM 42 C C38 CDL . . . HA 31 246.43 168.285 99.897 1 74.84 ? C38 CDL 201 a 1 
HETATM 43 C C39 CDL . . . HA 31 247.446 169.361 100.252 1 74.84 ? C39 CDL 201 a 1 
HETATM 44 C C40 CDL . . . HA 31 248.158 169.025 101.556 1 74.84 ? C40 CDL 201 a 1 
HETATM 45 C C41 CDL . . . HA 31 248.931 167.718 101.433 1 74.84 ? C41 CDL 201 a 1 
HETATM 46 C C42 CDL . . . HA 31 249.814 167.712 100.19 1 74.84 ? C42 CDL 201 a 1 
HETATM 47 C C43 CDL . . . HA 31 250.849 168.83 100.235 1 74.84 ? C43 CDL 201 a 1 
HETATM 48 C C44 CDL . . . HA 31 251.767 168.684 101.443 1 74.84 ? C44 CDL 201 a 1 
HETATM 49 C C45 CDL . . . HA 31 252.936 169.658 101.364 1 74.84 ? C45 CDL 201 a 1 
HETATM 50 C C46 CDL . . . HA 31 252.476 171.102 101.533 1 74.84 ? C46 CDL 201 a 1 
HETATM 51 C C47 CDL . . . HA 31 253.597 172.066 101.212 1 74.84 ? C47 CDL 201 a 1 
HETATM 52 C CB2 CDL . . . HA 31 230.572 165.099 96.471 1 74.84 ? CB2 CDL 201 a 1 
HETATM 53 O OB2 CDL . . . HA 31 230.633 163.939 97.297 1 74.84 ? OB2 CDL 201 a 1 
HETATM 54 P PB2 CDL . . . HA 31 229.403 163.604 98.278 1 74.84 ? PB2 CDL 201 a 1 
HETATM 55 O OB3 CDL . . . HA 31 228.219 164.409 97.814 1 74.84 ? OB3 CDL 201 a 1 
HETATM 56 O OB4 CDL . . . HA 31 229.274 162.111 98.428 1 74.84 ? OB4 CDL 201 a 1 
HETATM 57 O OB5 CDL . . . HA 31 229.904 164.204 99.682 1 74.84 ? OB5 CDL 201 a 1 
HETATM 58 C CB3 CDL . . . HA 31 229.115 164.012 100.851 1 74.84 ? CB3 CDL 201 a 1 
HETATM 59 C CB4 CDL . . . HA 31 228.897 165.342 101.561 1 74.84 ? CB4 CDL 201 a 1 
HETATM 60 O OB6 CDL . . . HA 31 230.048 165.675 102.335 1 74.84 ? OB6 CDL 201 a 1 
HETATM 61 C CB5 CDL . . . HA 31 230.184 167.107 102.558 1 74.84 ? CB5 CDL 201 a 1 
HETATM 62 O OB7 CDL . . . HA 31 229.253 167.849 102.3 1 74.84 ? OB7 CDL 201 a 1 
HETATM 63 C C51 CDL . . . HA 31 231.477 167.669 103.096 1 74.84 ? C51 CDL 201 a 1 
HETATM 64 C C52 CDL . . . HA 31 231.347 169.18 103.242 1 74.84 ? C52 CDL 201 a 1 
HETATM 65 C C53 CDL . . . HA 31 232.686 169.878 103.03 1 74.84 ? C53 CDL 201 a 1 
HETATM 66 C C54 CDL . . . HA 31 232.547 171.383 103.231 1 74.84 ? C54 CDL 201 a 1 
HETATM 67 C C55 CDL . . . HA 31 233.795 172.129 102.781 1 74.84 ? C55 CDL 201 a 1 
HETATM 68 C C56 CDL . . . HA 31 233.798 173.55 103.332 1 74.84 ? C56 CDL 201 a 1 
HETATM 69 C C57 CDL . . . HA 31 232.452 174.23 103.111 1 74.84 ? C57 CDL 201 a 1 
HETATM 70 C C58 CDL . . . HA 31 232.351 175.536 103.891 1 74.84 ? C58 CDL 201 a 1 
HETATM 71 C C59 CDL . . . HA 31 231.143 176.342 103.429 1 74.84 ? C59 CDL 201 a 1 
HETATM 72 C C60 CDL . . . HA 31 230.752 177.408 104.445 1 74.84 ? C60 CDL 201 a 1 
HETATM 73 C C61 CDL . . . HA 31 231.782 178.529 104.498 1 74.84 ? C61 CDL 201 a 1 
HETATM 74 C C62 CDL . . . HA 31 231.202 179.77 105.169 1 74.84 ? C62 CDL 201 a 1 
HETATM 75 C C63 CDL . . . HA 31 230.694 179.464 106.573 1 74.84 ? C63 CDL 201 a 1 
HETATM 76 C CB6 CDL . . . HA 31 227.688 165.215 102.479 1 74.84 ? CB6 CDL 201 a 1 
HETATM 77 O OB8 CDL . . . HA 31 228 164.407 103.612 1 74.84 ? OB8 CDL 201 a 1 
HETATM 78 C CB7 CDL . . . HA 31 226.912 163.794 104.351 1 74.84 ? CB7 CDL 201 a 1 
HETATM 79 O OB9 CDL . . . HA 31 225.857 163.6 103.775 1 74.84 ? OB9 CDL 201 a 1 
HETATM 80 C C71 CDL . . . HA 31 227.062 163.424 105.808 1 74.84 ? C71 CDL 201 a 1 
HETATM 81 C C72 CDL . . . HA 31 225.679 163.427 106.451 1 74.84 ? C72 CDL 201 a 1 
HETATM 82 C C73 CDL . . . HA 31 225.74 163.09 107.936 1 74.84 ? C73 CDL 201 a 1 
HETATM 83 C C74 CDL . . . HA 31 224.622 163.794 108.697 1 74.84 ? C74 CDL 201 a 1 
HETATM 84 C C75 CDL . . . HA 31 224.338 163.118 110.034 1 74.84 ? C75 CDL 201 a 1 
HETATM 85 C C76 CDL . . . HA 31 225.574 163.083 110.924 1 74.84 ? C76 CDL 201 a 1 
HETATM 86 C C77 CDL . . . HA 31 225.337 162.206 112.148 1 74.84 ? C77 CDL 201 a 1 
HETATM 87 C C78 CDL . . . HA 31 224.63 162.969 113.262 1 74.84 ? C78 CDL 201 a 1 
HETATM 88 C C79 CDL . . . HA 31 225.553 164.03 113.848 1 74.84 ? C79 CDL 201 a 1 
HETATM 89 C C80 CDL . . . HA 31 224.934 164.695 115.071 1 74.84 ? C80 CDL 201 a 1 
HETATM 90 C C81 CDL . . . HA 31 225.774 165.89 115.504 1 74.84 ? C81 CDL 201 a 1 
HETATM 91 C C82 CDL . . . HA 31 225.265 166.488 116.81 1 74.84 ? C82 CDL 201 a 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    176 
_model_server_stats.query_time_ms           1250 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           91 
#