data_7VYE
#
_model_server_result.job_id            T8v5xM4dPwQH5Y84GqotoA 
_model_server_result.datetime_utc      '2024-12-21 16:42:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vye 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"SA","auth_seq_id":201}' 
#
_entry.id    7VYE 
#
_exptl.entry_id    7VYE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VYE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 31 FA N N 
? 31 HA N N 
? 31 LA N N 
? 31 MA N N 
? 31 PA N N 
? 31 QA N N 
? 31 SA N N 
? 31 YA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
disulf ? disulf5 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VYE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 101 101 PEE PEE . 
EA 30 PEE V 1 201 207 PEE PEE . 
FA 31 CDL V 1 202 201 CDL CDL . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 31 CDL a 1 201 201 CDL CDL . 
IA 33 PLX a 1 202 101 PLX PLX . 
JA 30 PEE b 1 201 720 PEE PEE . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 30 PEE i 1 402 718 PEE PEE . 
OA 33 PLX j 1 201 203 PLX PLX . 
PA 31 CDL l 1 701 712 CDL CDL . 
QA 31 CDL l 1 702 713 CDL CDL . 
RA 30 PEE l 1 703 719 PEE PEE . 
SA 31 CDL o 1 201 203 CDL CDL . 
TA 30 PEE r 1 501 202 PEE PEE . 
UA 33 PLX r 1 502 201 PLX PLX . 
VA 30 PEE s 1 401 202 PEE PEE . 
WA 30 PEE s 1 402 401 PEE PEE . 
XA 34 UQ s 1 403 403 UQ UQ . 
YA 31 CDL u 1 201 102 CDL CDL . 
ZA 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . SA 31 169.512 189.777 136.299 1 85.04 ? C1 CDL 201 o 1 
HETATM 2 O O1 CDL . . . SA 31 170.602 190.231 137.109 1 85.04 ? O1 CDL 201 o 1 
HETATM 3 C CA2 CDL . . . SA 31 168.416 190.834 136.269 1 85.04 ? CA2 CDL 201 o 1 
HETATM 4 O OA2 CDL . . . SA 31 168.745 191.851 135.326 1 85.04 ? OA2 CDL 201 o 1 
HETATM 5 P PA1 CDL . . . SA 31 167.572 192.769 134.718 1 85.04 ? PA1 CDL 201 o 1 
HETATM 6 O OA3 CDL . . . SA 31 166.335 191.917 134.588 1 85.04 ? OA3 CDL 201 o 1 
HETATM 7 O OA4 CDL . . . SA 31 167.526 194.055 135.508 1 85.04 ? OA4 CDL 201 o 1 
HETATM 8 O OA5 CDL . . . SA 31 168.102 193.127 133.242 1 85.04 ? OA5 CDL 201 o 1 
HETATM 9 C CA3 CDL . . . SA 31 167.523 192.496 132.102 1 85.04 ? CA3 CDL 201 o 1 
HETATM 10 C CA4 CDL . . . SA 31 167.005 193.534 131.115 1 85.04 ? CA4 CDL 201 o 1 
HETATM 11 O OA6 CDL . . . SA 31 167.076 192.977 129.802 1 85.04 ? OA6 CDL 201 o 1 
HETATM 12 C CA5 CDL . . . SA 31 167.087 193.974 128.743 1 85.04 ? CA5 CDL 201 o 1 
HETATM 13 O OA7 CDL . . . SA 31 166.483 195.022 128.896 1 85.04 ? OA7 CDL 201 o 1 
HETATM 14 C C11 CDL . . . SA 31 167.853 193.709 127.47 1 85.04 ? C11 CDL 201 o 1 
HETATM 15 C C12 CDL . . . SA 31 167.404 192.386 126.862 1 85.04 ? C12 CDL 201 o 1 
HETATM 16 C C13 CDL . . . SA 31 168.191 192.085 125.592 1 85.04 ? C13 CDL 201 o 1 
HETATM 17 C CA6 CDL . . . SA 31 167.855 194.797 131.215 1 85.04 ? CA6 CDL 201 o 1 
HETATM 18 O OA8 CDL . . . SA 31 169.055 194.682 130.453 1 85.04 ? OA8 CDL 201 o 1 
HETATM 19 C CA7 CDL . . . SA 31 170.206 195.5 130.8 1 85.04 ? CA7 CDL 201 o 1 
HETATM 20 O OA9 CDL . . . SA 31 170.636 195.456 131.939 1 85.04 ? OA9 CDL 201 o 1 
HETATM 21 C C31 CDL . . . SA 31 170.853 196.393 129.768 1 85.04 ? C31 CDL 201 o 1 
HETATM 22 C C32 CDL . . . SA 31 170.455 195.946 128.368 1 85.04 ? C32 CDL 201 o 1 
HETATM 23 C C33 CDL . . . SA 31 171.213 194.698 127.934 1 85.04 ? C33 CDL 201 o 1 
HETATM 24 C C34 CDL . . . SA 31 170.575 194.083 126.694 1 85.04 ? C34 CDL 201 o 1 
HETATM 25 C C35 CDL . . . SA 31 170.057 195.159 125.747 1 85.04 ? C35 CDL 201 o 1 
HETATM 26 C C36 CDL . . . SA 31 171.126 196.211 125.475 1 85.04 ? C36 CDL 201 o 1 
HETATM 27 C CB2 CDL . . . SA 31 168.95 188.479 136.866 1 85.04 ? CB2 CDL 201 o 1 
HETATM 28 O OB2 CDL . . . SA 31 168.153 187.849 135.864 1 85.04 ? OB2 CDL 201 o 1 
HETATM 29 P PB2 CDL . . . SA 31 168.013 186.247 135.806 1 85.04 ? PB2 CDL 201 o 1 
HETATM 30 O OB3 CDL . . . SA 31 169.044 185.642 136.726 1 85.04 ? OB3 CDL 201 o 1 
HETATM 31 O OB4 CDL . . . SA 31 166.557 185.88 135.962 1 85.04 ? OB4 CDL 201 o 1 
HETATM 32 O OB5 CDL . . . SA 31 168.446 185.966 134.282 1 85.04 ? OB5 CDL 201 o 1 
HETATM 33 C CB3 CDL . . . SA 31 169.642 185.238 134.005 1 85.04 ? CB3 CDL 201 o 1 
HETATM 34 C CB4 CDL . . . SA 31 170.515 185.935 132.957 1 85.04 ? CB4 CDL 201 o 1 
HETATM 35 O OB6 CDL . . . SA 31 170.113 187.289 132.734 1 85.04 ? OB6 CDL 201 o 1 
HETATM 36 C CB5 CDL . . . SA 31 171.272 188.157 132.645 1 85.04 ? CB5 CDL 201 o 1 
HETATM 37 O OB7 CDL . . . SA 31 172.067 188.171 133.569 1 85.04 ? OB7 CDL 201 o 1 
HETATM 38 C C51 CDL . . . SA 31 171.507 188.999 131.416 1 85.04 ? C51 CDL 201 o 1 
HETATM 39 C C52 CDL . . . SA 31 170.281 189.845 131.107 1 85.04 ? C52 CDL 201 o 1 
HETATM 40 C C53 CDL . . . SA 31 170.583 190.778 129.943 1 85.04 ? C53 CDL 201 o 1 
HETATM 41 C C54 CDL . . . SA 31 171.584 190.136 128.991 1 85.04 ? C54 CDL 201 o 1 
HETATM 42 C C55 CDL . . . SA 31 171.817 191.007 127.763 1 85.04 ? C55 CDL 201 o 1 
HETATM 43 C C56 CDL . . . SA 31 172.966 190.459 126.928 1 85.04 ? C56 CDL 201 o 1 
HETATM 44 C C57 CDL . . . SA 31 173.086 191.187 125.596 1 85.04 ? C57 CDL 201 o 1 
HETATM 45 C C58 CDL . . . SA 31 174.362 190.769 124.875 1 85.04 ? C58 CDL 201 o 1 
HETATM 46 C C59 CDL . . . SA 31 174.266 191.02 123.376 1 85.04 ? C59 CDL 201 o 1 
HETATM 47 C C60 CDL . . . SA 31 173.413 189.954 122.701 1 85.04 ? C60 CDL 201 o 1 
HETATM 48 C CB6 CDL . . . SA 31 170.486 185.177 131.63 1 85.04 ? CB6 CDL 201 o 1 
HETATM 49 O OB8 CDL . . . SA 31 171.018 186.02 130.609 1 85.04 ? OB8 CDL 201 o 1 
HETATM 50 C CB7 CDL . . . SA 31 171.816 185.484 129.52 1 85.04 ? CB7 CDL 201 o 1 
HETATM 51 O OB9 CDL . . . SA 31 172.118 184.305 129.524 1 85.04 ? OB9 CDL 201 o 1 
HETATM 52 C C71 CDL . . . SA 31 172.268 186.394 128.405 1 85.04 ? C71 CDL 201 o 1 
HETATM 53 C C72 CDL . . . SA 31 173.354 185.718 127.581 1 85.04 ? C72 CDL 201 o 1 
HETATM 54 C C73 CDL . . . SA 31 173.766 186.615 126.422 1 85.04 ? C73 CDL 201 o 1 
HETATM 55 C C74 CDL . . . SA 31 174.662 185.874 125.44 1 85.04 ? C74 CDL 201 o 1 
HETATM 56 C C75 CDL . . . SA 31 176.124 185.954 125.853 1 85.04 ? C75 CDL 201 o 1 
HETATM 57 C C76 CDL . . . SA 31 176.991 185.133 124.91 1 85.04 ? C76 CDL 201 o 1 
HETATM 58 C C77 CDL . . . SA 31 178.45 185.546 125.028 1 85.04 ? C77 CDL 201 o 1 
HETATM 59 C C78 CDL . . . SA 31 179.362 184.344 124.831 1 85.04 ? C78 CDL 201 o 1 
HETATM 60 C C79 CDL . . . SA 31 179.307 183.841 123.397 1 85.04 ? C79 CDL 201 o 1 
HETATM 61 C C80 CDL . . . SA 31 180.144 184.736 122.496 1 85.04 ? C80 CDL 201 o 1 
HETATM 62 C C81 CDL . . . SA 31 181.512 184.988 123.117 1 85.04 ? C81 CDL 201 o 1 
HETATM 63 C C82 CDL . . . SA 31 182.109 183.692 123.65 1 85.04 ? C82 CDL 201 o 1 
HETATM 64 C C83 CDL . . . SA 31 181.755 182.531 122.732 1 85.04 ? C83 CDL 201 o 1 
HETATM 65 C C84 CDL . . . SA 31 182.235 182.788 121.309 1 85.04 ? C84 CDL 201 o 1 
HETATM 66 C C85 CDL . . . SA 31 183.756 182.812 121.243 1 85.04 ? C85 CDL 201 o 1 
HETATM 67 C C86 CDL . . . SA 31 184.231 182.503 119.83 1 85.04 ? C86 CDL 201 o 1 
HETATM 68 C C87 CDL . . . SA 31 183.686 181.169 119.371 1 85.04 ? C87 CDL 201 o 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    64 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           68 
#