data_7VYE # _model_server_result.job_id Yr--n-AqTDkfrea3K5_LKg _model_server_result.datetime_utc '2024-12-30 18:04:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":202}' # _entry.id 7VYE # _exptl.entry_id 7VYE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 FA N N ? 31 HA N N ? 31 LA N N ? 31 MA N N ? 31 PA N N ? 31 QA N N ? 31 SA N N ? 31 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? disulf ? disulf5 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VYE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE U 1 101 101 PEE PEE . EA 30 PEE V 1 201 207 PEE PEE . FA 31 CDL V 1 202 201 CDL CDL . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 31 CDL a 1 201 201 CDL CDL . IA 33 PLX a 1 202 101 PLX PLX . JA 30 PEE b 1 201 720 PEE PEE . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 31 CDL i 1 401 401 CDL CDL . NA 30 PEE i 1 402 718 PEE PEE . OA 33 PLX j 1 201 203 PLX PLX . PA 31 CDL l 1 701 712 CDL CDL . QA 31 CDL l 1 702 713 CDL CDL . RA 30 PEE l 1 703 719 PEE PEE . SA 31 CDL o 1 201 203 CDL CDL . TA 30 PEE r 1 501 202 PEE PEE . UA 33 PLX r 1 502 201 PLX PLX . VA 30 PEE s 1 401 202 PEE PEE . WA 30 PEE s 1 402 401 PEE PEE . XA 34 UQ s 1 403 403 UQ UQ . YA 31 CDL u 1 201 102 CDL CDL . ZA 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . LA 31 196.643 137.273 135.832 1 33.06 ? C1 CDL 202 g 1 HETATM 2 O O1 CDL . . . LA 31 196.23 136.749 134.607 1 33.06 ? O1 CDL 202 g 1 HETATM 3 C CA2 CDL . . . LA 31 196.01 138.68 135.977 1 33.06 ? CA2 CDL 202 g 1 HETATM 4 O OA2 CDL . . . LA 31 197.005 139.565 136.467 1 33.06 ? OA2 CDL 202 g 1 HETATM 5 P PA1 CDL . . . LA 31 196.736 140.269 137.939 1 33.06 ? PA1 CDL 202 g 1 HETATM 6 O OA3 CDL . . . LA 31 197.867 139.939 138.881 1 33.06 ? OA3 CDL 202 g 1 HETATM 7 O OA4 CDL . . . LA 31 195.45 139.741 138.497 1 33.06 ? OA4 CDL 202 g 1 HETATM 8 O OA5 CDL . . . LA 31 196.613 141.912 137.755 1 33.06 ? OA5 CDL 202 g 1 HETATM 9 C CA3 CDL . . . LA 31 195.324 142.451 137.527 1 33.06 ? CA3 CDL 202 g 1 HETATM 10 C CA4 CDL . . . LA 31 195.331 143.131 136.17 1 33.06 ? CA4 CDL 202 g 1 HETATM 11 O OA6 CDL . . . LA 31 194.324 144.099 136.128 1 33.06 ? OA6 CDL 202 g 1 HETATM 12 C CA5 CDL . . . LA 31 194.741 145.383 136.559 1 33.06 ? CA5 CDL 202 g 1 HETATM 13 O OA7 CDL . . . LA 31 195.798 145.528 137.084 1 33.06 ? OA7 CDL 202 g 1 HETATM 14 C C11 CDL . . . LA 31 193.813 146.611 136.339 1 33.06 ? C11 CDL 202 g 1 HETATM 15 C C12 CDL . . . LA 31 194.421 147.598 135.343 1 33.06 ? C12 CDL 202 g 1 HETATM 16 C C13 CDL . . . LA 31 193.525 147.77 134.125 1 33.06 ? C13 CDL 202 g 1 HETATM 17 C C14 CDL . . . LA 31 193.366 149.242 133.706 1 33.06 ? C14 CDL 202 g 1 HETATM 18 C C15 CDL . . . LA 31 193.245 149.365 132.162 1 33.06 ? C15 CDL 202 g 1 HETATM 19 C C16 CDL . . . LA 31 192.498 148.15 131.563 1 33.06 ? C16 CDL 202 g 1 HETATM 20 C C17 CDL . . . LA 31 192.511 148.144 130.008 1 33.06 ? C17 CDL 202 g 1 HETATM 21 C C18 CDL . . . LA 31 192.301 146.719 129.444 1 33.06 ? C18 CDL 202 g 1 HETATM 22 C C19 CDL . . . LA 31 192.256 146.704 127.892 1 33.06 ? C19 CDL 202 g 1 HETATM 23 C C20 CDL . . . LA 31 193.291 145.722 127.291 1 33.06 ? C20 CDL 202 g 1 HETATM 24 C C21 CDL . . . LA 31 193.185 145.625 125.747 1 33.06 ? C21 CDL 202 g 1 HETATM 25 C C22 CDL . . . LA 31 194.426 144.938 125.111 1 33.06 ? C22 CDL 202 g 1 HETATM 26 C C23 CDL . . . LA 31 194.78 143.599 125.795 1 33.06 ? C23 CDL 202 g 1 HETATM 27 C C24 CDL . . . LA 31 196.123 143.027 125.274 1 33.06 ? C24 CDL 202 g 1 HETATM 28 C C25 CDL . . . LA 31 196.578 141.794 126.069 1 33.06 ? C25 CDL 202 g 1 HETATM 29 C C26 CDL . . . LA 31 196.578 142.054 127.59 1 33.06 ? C26 CDL 202 g 1 HETATM 30 C C27 CDL . . . LA 31 196.884 140.782 128.386 1 33.06 ? C27 CDL 202 g 1 HETATM 31 C CA6 CDL . . . LA 31 195.058 142.083 135.079 1 33.06 ? CA6 CDL 202 g 1 HETATM 32 O OA8 CDL . . . LA 31 193.917 142.493 134.356 1 33.06 ? OA8 CDL 202 g 1 HETATM 33 C CA7 CDL . . . LA 31 194.077 142.403 132.941 1 33.06 ? CA7 CDL 202 g 1 HETATM 34 O OA9 CDL . . . LA 31 195.122 142.637 132.449 1 33.06 ? OA9 CDL 202 g 1 HETATM 35 C C31 CDL . . . LA 31 192.886 141.993 132.058 1 33.06 ? C31 CDL 202 g 1 HETATM 36 C C32 CDL . . . LA 31 193.253 141.929 130.579 1 33.06 ? C32 CDL 202 g 1 HETATM 37 C C33 CDL . . . LA 31 192.701 143.123 129.789 1 33.06 ? C33 CDL 202 g 1 HETATM 38 C C34 CDL . . . LA 31 191.273 142.872 129.253 1 33.06 ? C34 CDL 202 g 1 HETATM 39 C C35 CDL . . . LA 31 191.277 142.006 127.968 1 33.06 ? C35 CDL 202 g 1 HETATM 40 C C36 CDL . . . LA 31 190.249 142.506 126.929 1 33.06 ? C36 CDL 202 g 1 HETATM 41 C C37 CDL . . . LA 31 189.894 141.423 125.898 1 33.06 ? C37 CDL 202 g 1 HETATM 42 C C38 CDL . . . LA 31 190.136 141.876 124.454 1 33.06 ? C38 CDL 202 g 1 HETATM 43 C C39 CDL . . . LA 31 190.055 143.405 124.287 1 33.06 ? C39 CDL 202 g 1 HETATM 44 C C40 CDL . . . LA 31 191.109 143.946 123.299 1 33.06 ? C40 CDL 202 g 1 HETATM 45 C C41 CDL . . . LA 31 190.851 145.445 122.921 1 33.06 ? C41 CDL 202 g 1 HETATM 46 C C42 CDL . . . LA 31 191.785 145.92 121.776 1 33.06 ? C42 CDL 202 g 1 HETATM 47 C C43 CDL . . . LA 31 191.207 147.13 120.99 1 33.06 ? C43 CDL 202 g 1 HETATM 48 C C44 CDL . . . LA 31 191.887 148.469 121.372 1 33.06 ? C44 CDL 202 g 1 HETATM 49 C C45 CDL . . . LA 31 191.321 149.045 122.665 1 33.06 ? C45 CDL 202 g 1 HETATM 50 C C46 CDL . . . LA 31 192.42 149.313 123.709 1 33.06 ? C46 CDL 202 g 1 HETATM 51 C C47 CDL . . . LA 31 191.953 149.005 125.126 1 33.06 ? C47 CDL 202 g 1 HETATM 52 C CB2 CDL . . . LA 31 198.209 137.312 135.841 1 33.06 ? CB2 CDL 202 g 1 HETATM 53 O OB2 CDL . . . LA 31 198.687 136.028 135.469 1 33.06 ? OB2 CDL 202 g 1 HETATM 54 P PB2 CDL . . . LA 31 199.977 135.959 134.402 1 33.06 ? PB2 CDL 202 g 1 HETATM 55 O OB3 CDL . . . LA 31 201.279 135.922 135.181 1 33.06 ? OB3 CDL 202 g 1 HETATM 56 O OB4 CDL . . . LA 31 199.856 134.714 133.558 1 33.06 ? OB4 CDL 202 g 1 HETATM 57 O OB5 CDL . . . LA 31 199.947 137.318 133.421 1 33.06 ? OB5 CDL 202 g 1 HETATM 58 C CB3 CDL . . . LA 31 200.306 137.184 132.052 1 33.06 ? CB3 CDL 202 g 1 HETATM 59 C CB4 CDL . . . LA 31 199.024 137.253 131.207 1 33.06 ? CB4 CDL 202 g 1 HETATM 60 O OB6 CDL . . . LA 31 199.296 137.818 129.944 1 33.06 ? OB6 CDL 202 g 1 HETATM 61 C CB5 CDL . . . LA 31 199.801 136.908 128.971 1 33.06 ? CB5 CDL 202 g 1 HETATM 62 O OB7 CDL . . . LA 31 200.887 136.449 129.087 1 33.06 ? OB7 CDL 202 g 1 HETATM 63 C C51 CDL . . . LA 31 198.94 136.509 127.756 1 33.06 ? C51 CDL 202 g 1 HETATM 64 C C52 CDL . . . LA 31 198.808 137.642 126.725 1 33.06 ? C52 CDL 202 g 1 HETATM 65 C C53 CDL . . . LA 31 199.246 137.203 125.319 1 33.06 ? C53 CDL 202 g 1 HETATM 66 C C54 CDL . . . LA 31 200.578 136.424 125.332 1 33.06 ? C54 CDL 202 g 1 HETATM 67 C C55 CDL . . . LA 31 200.911 135.804 123.966 1 33.06 ? C55 CDL 202 g 1 HETATM 68 C C56 CDL . . . LA 31 202.006 134.712 124.08 1 33.06 ? C56 CDL 202 g 1 HETATM 69 C C57 CDL . . . LA 31 202.523 134.235 122.707 1 33.06 ? C57 CDL 202 g 1 HETATM 70 C C58 CDL . . . LA 31 204.038 134.505 122.528 1 33.06 ? C58 CDL 202 g 1 HETATM 71 C C59 CDL . . . LA 31 204.719 133.476 121.593 1 33.06 ? C59 CDL 202 g 1 HETATM 72 C C60 CDL . . . LA 31 203.907 133.227 120.309 1 33.06 ? C60 CDL 202 g 1 HETATM 73 C C61 CDL . . . LA 31 204.089 134.363 119.266 1 33.06 ? C61 CDL 202 g 1 HETATM 74 C C62 CDL . . . LA 31 202.774 134.726 118.543 1 33.06 ? C62 CDL 202 g 1 HETATM 75 C C63 CDL . . . LA 31 203 134.987 117.048 1 33.06 ? C63 CDL 202 g 1 HETATM 76 C C64 CDL . . . LA 31 203.68 133.794 116.36 1 33.06 ? C64 CDL 202 g 1 HETATM 77 C C65 CDL . . . LA 31 204.966 134.18 115.639 1 33.06 ? C65 CDL 202 g 1 HETATM 78 C C66 CDL . . . LA 31 206.081 133.171 115.89 1 33.06 ? C66 CDL 202 g 1 HETATM 79 C C67 CDL . . . LA 31 206.734 132.686 114.598 1 33.06 ? C67 CDL 202 g 1 HETATM 80 C CB6 CDL . . . LA 31 197.998 138.112 131.937 1 33.06 ? CB6 CDL 202 g 1 HETATM 81 O OB8 CDL . . . LA 31 197.23 138.794 130.952 1 33.06 ? OB8 CDL 202 g 1 HETATM 82 C CB7 CDL . . . LA 31 195.846 138.851 131.238 1 33.06 ? CB7 CDL 202 g 1 HETATM 83 O OB9 CDL . . . LA 31 195.423 139.705 131.942 1 33.06 ? OB9 CDL 202 g 1 HETATM 84 C C71 CDL . . . LA 31 194.891 137.795 130.636 1 33.06 ? C71 CDL 202 g 1 HETATM 85 C C72 CDL . . . LA 31 193.752 138.417 129.822 1 33.06 ? C72 CDL 202 g 1 HETATM 86 C C73 CDL . . . LA 31 193.587 137.726 128.462 1 33.06 ? C73 CDL 202 g 1 HETATM 87 C C74 CDL . . . LA 31 194.012 138.631 127.298 1 33.06 ? C74 CDL 202 g 1 HETATM 88 C C75 CDL . . . LA 31 194.43 137.812 126.049 1 33.06 ? C75 CDL 202 g 1 HETATM 89 C C76 CDL . . . LA 31 193.456 138.009 124.86 1 33.06 ? C76 CDL 202 g 1 HETATM 90 C C77 CDL . . . LA 31 192.97 139.482 124.728 1 33.06 ? C77 CDL 202 g 1 HETATM 91 C C78 CDL . . . LA 31 193.343 140.083 123.368 1 33.06 ? C78 CDL 202 g 1 HETATM 92 C C79 CDL . . . LA 31 194.81 139.782 122.987 1 33.06 ? C79 CDL 202 g 1 HETATM 93 C C80 CDL . . . LA 31 195.263 140.56 121.725 1 33.06 ? C80 CDL 202 g 1 HETATM 94 C C81 CDL . . . LA 31 194.876 142.036 121.78 1 33.06 ? C81 CDL 202 g 1 HETATM 95 C C82 CDL . . . LA 31 195.812 142.906 120.894 1 33.06 ? C82 CDL 202 g 1 HETATM 96 C C83 CDL . . . LA 31 196.012 142.288 119.498 1 33.06 ? C83 CDL 202 g 1 HETATM 97 C C84 CDL . . . LA 31 196.908 143.159 118.585 1 33.06 ? C84 CDL 202 g 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 194 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 97 #