data_7VYE # _model_server_result.job_id 6IGAlriprWMGWesiC5u5QQ _model_server_result.datetime_utc '2024-12-21 16:36:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"MA","auth_seq_id":401}' # _entry.id 7VYE # _exptl.entry_id 7VYE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 FA N N ? 31 HA N N ? 31 LA N N ? 31 MA N N ? 31 PA N N ? 31 QA N N ? 31 SA N N ? 31 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? disulf ? disulf5 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VYE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE U 1 101 101 PEE PEE . EA 30 PEE V 1 201 207 PEE PEE . FA 31 CDL V 1 202 201 CDL CDL . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 31 CDL a 1 201 201 CDL CDL . IA 33 PLX a 1 202 101 PLX PLX . JA 30 PEE b 1 201 720 PEE PEE . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 31 CDL i 1 401 401 CDL CDL . NA 30 PEE i 1 402 718 PEE PEE . OA 33 PLX j 1 201 203 PLX PLX . PA 31 CDL l 1 701 712 CDL CDL . QA 31 CDL l 1 702 713 CDL CDL . RA 30 PEE l 1 703 719 PEE PEE . SA 31 CDL o 1 201 203 CDL CDL . TA 30 PEE r 1 501 202 PEE PEE . UA 33 PLX r 1 502 201 PLX PLX . VA 30 PEE s 1 401 202 PEE PEE . WA 30 PEE s 1 402 401 PEE PEE . XA 34 UQ s 1 403 403 UQ UQ . YA 31 CDL u 1 201 102 CDL CDL . ZA 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . MA 31 170.305 128.592 137.617 1 71.15 ? C1 CDL 401 i 1 HETATM 2 O O1 CDL . . . MA 31 169.251 129.559 137.604 1 71.15 ? O1 CDL 401 i 1 HETATM 3 C CA2 CDL . . . MA 31 171.626 129.292 137.902 1 71.15 ? CA2 CDL 401 i 1 HETATM 4 O OA2 CDL . . . MA 31 172.392 129.248 136.701 1 71.15 ? OA2 CDL 401 i 1 HETATM 5 P PA1 CDL . . . MA 31 173.397 130.431 136.285 1 71.15 ? PA1 CDL 401 i 1 HETATM 6 O OA3 CDL . . . MA 31 172.725 131.751 136.571 1 71.15 ? OA3 CDL 401 i 1 HETATM 7 O OA4 CDL . . . MA 31 174.757 130.127 136.864 1 71.15 ? OA4 CDL 401 i 1 HETATM 8 O OA5 CDL . . . MA 31 173.457 130.209 134.692 1 71.15 ? OA5 CDL 401 i 1 HETATM 9 C CA3 CDL . . . MA 31 173.744 131.263 133.776 1 71.15 ? CA3 CDL 401 i 1 HETATM 10 C CA4 CDL . . . MA 31 173.309 130.787 132.395 1 71.15 ? CA4 CDL 401 i 1 HETATM 11 O OA6 CDL . . . MA 31 174.221 131.221 131.385 1 71.15 ? OA6 CDL 401 i 1 HETATM 12 C CA5 CDL . . . MA 31 173.783 130.852 130.043 1 71.15 ? CA5 CDL 401 i 1 HETATM 13 O OA7 CDL . . . MA 31 172.864 130.064 129.898 1 71.15 ? OA7 CDL 401 i 1 HETATM 14 C C11 CDL . . . MA 31 174.46 131.424 128.823 1 71.15 ? C11 CDL 401 i 1 HETATM 15 C C12 CDL . . . MA 31 174.178 130.495 127.65 1 71.15 ? C12 CDL 401 i 1 HETATM 16 C C13 CDL . . . MA 31 175.006 130.87 126.428 1 71.15 ? C13 CDL 401 i 1 HETATM 17 C C14 CDL . . . MA 31 174.204 131.756 125.486 1 71.15 ? C14 CDL 401 i 1 HETATM 18 C C15 CDL . . . MA 31 173.037 130.985 124.886 1 71.15 ? C15 CDL 401 i 1 HETATM 19 C C16 CDL . . . MA 31 173.536 129.755 124.139 1 71.15 ? C16 CDL 401 i 1 HETATM 20 C C17 CDL . . . MA 31 174.628 130.131 123.147 1 71.15 ? C17 CDL 401 i 1 HETATM 21 C C18 CDL . . . MA 31 174.111 131.127 122.116 1 71.15 ? C18 CDL 401 i 1 HETATM 22 C CA6 CDL . . . MA 31 171.92 131.335 132.087 1 71.15 ? CA6 CDL 401 i 1 HETATM 23 O OA8 CDL . . . MA 31 170.914 130.411 132.501 1 71.15 ? OA8 CDL 401 i 1 HETATM 24 C CA7 CDL . . . MA 31 170.13 129.736 131.479 1 71.15 ? CA7 CDL 401 i 1 HETATM 25 O OA9 CDL . . . MA 31 170.693 128.985 130.702 1 71.15 ? OA9 CDL 401 i 1 HETATM 26 C C31 CDL . . . MA 31 168.64 129.945 131.378 1 71.15 ? C31 CDL 401 i 1 HETATM 27 C C32 CDL . . . MA 31 168.169 129.39 130.04 1 71.15 ? C32 CDL 401 i 1 HETATM 28 C C33 CDL . . . MA 31 168.962 129.993 128.886 1 71.15 ? C33 CDL 401 i 1 HETATM 29 C C34 CDL . . . MA 31 168.966 131.514 128.971 1 71.15 ? C34 CDL 401 i 1 HETATM 30 C C35 CDL . . . MA 31 169.902 132.13 127.938 1 71.15 ? C35 CDL 401 i 1 HETATM 31 C C36 CDL . . . MA 31 169.236 132.256 126.574 1 71.15 ? C36 CDL 401 i 1 HETATM 32 C C37 CDL . . . MA 31 169.992 133.254 125.707 1 71.15 ? C37 CDL 401 i 1 HETATM 33 C C38 CDL . . . MA 31 169.103 133.811 124.604 1 71.15 ? C38 CDL 401 i 1 HETATM 34 C C39 CDL . . . MA 31 169.125 132.925 123.366 1 71.15 ? C39 CDL 401 i 1 HETATM 35 C C40 CDL . . . MA 31 170.222 133.354 122.401 1 71.15 ? C40 CDL 401 i 1 HETATM 36 C C41 CDL . . . MA 31 170.095 132.606 121.081 1 71.15 ? C41 CDL 401 i 1 HETATM 37 C C42 CDL . . . MA 31 170.952 133.254 120 1 71.15 ? C42 CDL 401 i 1 HETATM 38 C CB2 CDL . . . MA 31 170.018 127.545 138.684 1 71.15 ? CB2 CDL 401 i 1 HETATM 39 O OB2 CDL . . . MA 31 169.899 126.293 138.016 1 71.15 ? OB2 CDL 401 i 1 HETATM 40 P PB2 CDL . . . MA 31 169.011 125.082 138.592 1 71.15 ? PB2 CDL 401 i 1 HETATM 41 O OB3 CDL . . . MA 31 167.566 125.323 138.232 1 71.15 ? OB3 CDL 401 i 1 HETATM 42 O OB4 CDL . . . MA 31 169.403 124.844 140.029 1 71.15 ? OB4 CDL 401 i 1 HETATM 43 O OB5 CDL . . . MA 31 169.573 123.871 137.694 1 71.15 ? OB5 CDL 401 i 1 HETATM 44 C CB3 CDL . . . MA 31 168.741 123.217 136.742 1 71.15 ? CB3 CDL 401 i 1 HETATM 45 C CB4 CDL . . . MA 31 169.57 122.988 135.485 1 71.15 ? CB4 CDL 401 i 1 HETATM 46 O OB6 CDL . . . MA 31 168.779 123.331 134.342 1 71.15 ? OB6 CDL 401 i 1 HETATM 47 C CB5 CDL . . . MA 31 169.127 124.625 133.773 1 71.15 ? CB5 CDL 401 i 1 HETATM 48 O OB7 CDL . . . MA 31 170.024 125.285 134.27 1 71.15 ? OB7 CDL 401 i 1 HETATM 49 C C51 CDL . . . MA 31 168.37 125.151 132.578 1 71.15 ? C51 CDL 401 i 1 HETATM 50 C C52 CDL . . . MA 31 168.354 124.095 131.481 1 71.15 ? C52 CDL 401 i 1 HETATM 51 C C53 CDL . . . MA 31 167.704 124.637 130.215 1 71.15 ? C53 CDL 401 i 1 HETATM 52 C C54 CDL . . . MA 31 167.752 123.608 129.093 1 71.15 ? C54 CDL 401 i 1 HETATM 53 C C55 CDL . . . MA 31 167.266 124.209 127.781 1 71.15 ? C55 CDL 401 i 1 HETATM 54 C C56 CDL . . . MA 31 167.395 123.207 126.642 1 71.15 ? C56 CDL 401 i 1 HETATM 55 C CB6 CDL . . . MA 31 170.088 121.548 135.441 1 71.15 ? CB6 CDL 401 i 1 HETATM 56 O OB8 CDL . . . MA 31 169.427 120.779 134.438 1 71.15 ? OB8 CDL 401 i 1 HETATM 57 C CB7 CDL . . . MA 31 169.068 119.39 134.669 1 71.15 ? CB7 CDL 401 i 1 HETATM 58 O OB9 CDL . . . MA 31 169.105 118.944 135.8 1 71.15 ? OB9 CDL 401 i 1 HETATM 59 C C71 CDL . . . MA 31 168.634 118.527 133.509 1 71.15 ? C71 CDL 401 i 1 HETATM 60 C C72 CDL . . . MA 31 167.401 117.723 133.897 1 71.15 ? C72 CDL 401 i 1 HETATM 61 C C73 CDL . . . MA 31 166.733 117.149 132.653 1 71.15 ? C73 CDL 401 i 1 HETATM 62 C C74 CDL . . . MA 31 165.232 116.981 132.852 1 71.15 ? C74 CDL 401 i 1 HETATM 63 C C75 CDL . . . MA 31 164.532 116.786 131.513 1 71.15 ? C75 CDL 401 i 1 HETATM 64 C C76 CDL . . . MA 31 163.024 116.968 131.643 1 71.15 ? C76 CDL 401 i 1 HETATM 65 C C77 CDL . . . MA 31 162.36 116.962 130.271 1 71.15 ? C77 CDL 401 i 1 HETATM 66 C C78 CDL . . . MA 31 160.854 117.162 130.389 1 71.15 ? C78 CDL 401 i 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 66 #