data_7VYE # _model_server_result.job_id '_DBiup8sCZiwgYDOVoGp-A' _model_server_result.datetime_utc '2024-12-21 16:41:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":402}' # _entry.id 7VYE # _exptl.entry_id 7VYE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 JA N N ? 30 NA N N ? 30 RA N N ? 30 TA N N ? 30 VA N N ? 30 WA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? disulf ? disulf5 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 7VYE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE U 1 101 101 PEE PEE . EA 30 PEE V 1 201 207 PEE PEE . FA 31 CDL V 1 202 201 CDL CDL . GA 32 8Q1 X 1 201 201 8Q1 8Q1 . HA 31 CDL a 1 201 201 CDL CDL . IA 33 PLX a 1 202 101 PLX PLX . JA 30 PEE b 1 201 720 PEE PEE . KA 33 PLX g 1 201 705 PLX PLX . LA 31 CDL g 1 202 714 CDL CDL . MA 31 CDL i 1 401 401 CDL CDL . NA 30 PEE i 1 402 718 PEE PEE . OA 33 PLX j 1 201 203 PLX PLX . PA 31 CDL l 1 701 712 CDL CDL . QA 31 CDL l 1 702 713 CDL CDL . RA 30 PEE l 1 703 719 PEE PEE . SA 31 CDL o 1 201 203 CDL CDL . TA 30 PEE r 1 501 202 PEE PEE . UA 33 PLX r 1 502 201 PLX PLX . VA 30 PEE s 1 401 202 PEE PEE . WA 30 PEE s 1 402 401 PEE PEE . XA 34 UQ s 1 403 403 UQ UQ . YA 31 CDL u 1 201 102 CDL CDL . ZA 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . NA 30 176.789 169.304 118.073 1 43.83 ? C27 PEE 402 i 1 HETATM 2 C C26 PEE . . . NA 30 176.181 169.323 119.476 1 43.83 ? C26 PEE 402 i 1 HETATM 3 C C25 PEE . . . NA 30 177.069 168.627 120.499 1 43.83 ? C25 PEE 402 i 1 HETATM 4 C C24 PEE . . . NA 30 176.411 167.378 121.081 1 43.83 ? C24 PEE 402 i 1 HETATM 5 C C23 PEE . . . NA 30 177.349 166.622 122.019 1 43.83 ? C23 PEE 402 i 1 HETATM 6 C C22 PEE . . . NA 30 178.102 167.557 122.965 1 43.83 ? C22 PEE 402 i 1 HETATM 7 C C21 PEE . . . NA 30 179.395 168.106 122.355 1 43.83 ? C21 PEE 402 i 1 HETATM 8 C C20 PEE . . . NA 30 180.045 169.174 123.233 1 43.83 ? C20 PEE 402 i 1 HETATM 9 C C19 PEE . . . NA 30 180.654 168.584 124.505 1 43.83 ? C19 PEE 402 i 1 HETATM 10 C C18 PEE . . . NA 30 179.611 167.875 125.367 1 43.83 ? C18 PEE 402 i 1 HETATM 11 C C17 PEE . . . NA 30 180.244 166.856 126.313 1 43.83 ? C17 PEE 402 i 1 HETATM 12 C C16 PEE . . . NA 30 180.8 167.498 127.582 1 43.83 ? C16 PEE 402 i 1 HETATM 13 C C15 PEE . . . NA 30 181.084 166.453 128.659 1 43.83 ? C15 PEE 402 i 1 HETATM 14 C C14 PEE . . . NA 30 181.119 167.055 130.064 1 43.83 ? C14 PEE 402 i 1 HETATM 15 C C13 PEE . . . NA 30 181.817 166.125 131.06 1 43.83 ? C13 PEE 402 i 1 HETATM 16 C C12 PEE . . . NA 30 181.414 166.409 132.512 1 43.83 ? C12 PEE 402 i 1 HETATM 17 C C11 PEE . . . NA 30 179.898 166.553 132.671 1 43.83 ? C11 PEE 402 i 1 HETATM 18 C C10 PEE . . . NA 30 179.441 166.223 134.096 1 43.83 ? C10 PEE 402 i 1 HETATM 19 O O4 PEE . . . NA 30 180.17 165.66 134.837 1 43.83 ? O4 PEE 402 i 1 HETATM 20 O O2 PEE . . . NA 30 178.157 166.578 134.522 1 43.83 ? O2 PEE 402 i 1 HETATM 21 C C2 PEE . . . NA 30 177.381 165.475 134.894 1 43.83 ? C2 PEE 402 i 1 HETATM 22 C C1 PEE . . . NA 30 177.52 165.255 136.398 1 43.83 ? C1 PEE 402 i 1 HETATM 23 O O3P PEE . . . NA 30 178.553 164.329 136.603 1 43.83 ? O3P PEE 402 i 1 HETATM 24 P P PEE . . . NA 30 178.16 162.822 137.154 1 43.83 ? P PEE 402 i 1 HETATM 25 O O2P PEE . . . NA 30 177.159 162.179 136.224 1 43.83 ? O2P PEE 402 i 1 HETATM 26 O O1P PEE . . . NA 30 179.407 161.973 137.216 1 43.83 ? O1P PEE 402 i 1 HETATM 27 O O4P PEE . . . NA 30 177.502 162.96 138.664 1 43.83 ? O4P PEE 402 i 1 HETATM 28 C C4 PEE . . . NA 30 177.424 164.236 139.247 1 43.83 ? C4 PEE 402 i 1 HETATM 29 C C5 PEE . . . NA 30 176.793 164.089 140.633 1 43.83 ? C5 PEE 402 i 1 HETATM 30 N N PEE . . . NA 30 177.614 163.238 141.472 1 43.83 ? N PEE 402 i 1 HETATM 31 C C3 PEE . . . NA 30 175.92 165.731 134.537 1 43.83 ? C3 PEE 402 i 1 HETATM 32 O O3 PEE . . . NA 30 175.458 164.652 133.772 1 43.83 ? O3 PEE 402 i 1 HETATM 33 C C30 PEE . . . NA 30 175.666 164.76 132.389 1 43.83 ? C30 PEE 402 i 1 HETATM 34 O O5 PEE . . . NA 30 176.356 165.609 131.94 1 43.83 ? O5 PEE 402 i 1 HETATM 35 C C31 PEE . . . NA 30 174.989 163.776 131.437 1 43.83 ? C31 PEE 402 i 1 HETATM 36 C C32 PEE . . . NA 30 174.958 164.301 130.003 1 43.83 ? C32 PEE 402 i 1 HETATM 37 C C33 PEE . . . NA 30 176.348 164.327 129.364 1 43.83 ? C33 PEE 402 i 1 HETATM 38 C C34 PEE . . . NA 30 176.333 163.707 127.967 1 43.83 ? C34 PEE 402 i 1 HETATM 39 C C35 PEE . . . NA 30 177.319 164.385 127.014 1 43.83 ? C35 PEE 402 i 1 HETATM 40 C C36 PEE . . . NA 30 177.294 163.759 125.617 1 43.83 ? C36 PEE 402 i 1 HETATM 41 C C37 PEE . . . NA 30 176.419 164.54 124.636 1 43.83 ? C37 PEE 402 i 1 HETATM 42 C C38 PEE . . . NA 30 174.97 164.06 124.637 1 43.83 ? C38 PEE 402 i 1 HETATM 43 C C39 PEE . . . NA 30 174.21 164.489 123.387 1 43.83 ? C39 PEE 402 i 1 HETATM 44 C C40 PEE . . . NA 30 172.713 164.236 123.524 1 43.83 ? C40 PEE 402 i 1 HETATM 45 C C41 PEE . . . NA 30 171.931 164.63 122.278 1 43.83 ? C41 PEE 402 i 1 HETATM 46 C C42 PEE . . . NA 30 170.434 164.39 122.442 1 43.83 ? C42 PEE 402 i 1 HETATM 47 C C43 PEE . . . NA 30 169.665 164.604 121.143 1 43.83 ? C43 PEE 402 i 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 47 #