data_7VYE
#
_model_server_result.job_id            JMigdJB6s-gvfgI65pmrjw 
_model_server_result.datetime_utc      '2024-12-21 16:51:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vye 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"PA","auth_seq_id":701}' 
#
_entry.id    7VYE 
#
_exptl.entry_id    7VYE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VYE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 31 FA N N 
? 31 HA N N 
? 31 LA N N 
? 31 MA N N 
? 31 PA N N 
? 31 QA N N 
? 31 SA N N 
? 31 YA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
disulf ? disulf5 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VYE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 101 101 PEE PEE . 
EA 30 PEE V 1 201 207 PEE PEE . 
FA 31 CDL V 1 202 201 CDL CDL . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 31 CDL a 1 201 201 CDL CDL . 
IA 33 PLX a 1 202 101 PLX PLX . 
JA 30 PEE b 1 201 720 PEE PEE . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 30 PEE i 1 402 718 PEE PEE . 
OA 33 PLX j 1 201 203 PLX PLX . 
PA 31 CDL l 1 701 712 CDL CDL . 
QA 31 CDL l 1 702 713 CDL CDL . 
RA 30 PEE l 1 703 719 PEE PEE . 
SA 31 CDL o 1 201 203 CDL CDL . 
TA 30 PEE r 1 501 202 PEE PEE . 
UA 33 PLX r 1 502 201 PLX PLX . 
VA 30 PEE s 1 401 202 PEE PEE . 
WA 30 PEE s 1 402 401 PEE PEE . 
XA 34 UQ s 1 403 403 UQ UQ . 
YA 31 CDL u 1 201 102 CDL CDL . 
ZA 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . PA 31 225.954 174.767 130.246 1 31.31 ? C1 CDL 701 l 1 
HETATM 2 O O1 CDL . . . PA 31 225.024 173.946 129.532 1 31.31 ? O1 CDL 701 l 1 
HETATM 3 C CA2 CDL . . . PA 31 226.165 176.098 129.528 1 31.31 ? CA2 CDL 701 l 1 
HETATM 4 O OA2 CDL . . . PA 31 225.989 175.953 128.121 1 31.31 ? OA2 CDL 701 l 1 
HETATM 5 P PA1 CDL . . . PA 31 226.087 177.225 127.146 1 31.31 ? PA1 CDL 701 l 1 
HETATM 6 O OA3 CDL . . . PA 31 227.412 177.18 126.435 1 31.31 ? OA3 CDL 701 l 1 
HETATM 7 O OA4 CDL . . . PA 31 225.681 178.447 127.925 1 31.31 ? OA4 CDL 701 l 1 
HETATM 8 O OA5 CDL . . . PA 31 224.937 176.942 126.066 1 31.31 ? OA5 CDL 701 l 1 
HETATM 9 C CA3 CDL . . . PA 31 225.258 176.332 124.822 1 31.31 ? CA3 CDL 701 l 1 
HETATM 10 C CA4 CDL . . . PA 31 225.325 177.391 123.735 1 31.31 ? CA4 CDL 701 l 1 
HETATM 11 O OA6 CDL . . . PA 31 224.384 178.434 123.959 1 31.31 ? OA6 CDL 701 l 1 
HETATM 12 C CA5 CDL . . . PA 31 224.336 179.271 122.775 1 31.31 ? CA5 CDL 701 l 1 
HETATM 13 O OA7 CDL . . . PA 31 225.391 179.609 122.271 1 31.31 ? OA7 CDL 701 l 1 
HETATM 14 C C11 CDL . . . PA 31 223.033 179.695 122.15 1 31.31 ? C11 CDL 701 l 1 
HETATM 15 C C12 CDL . . . PA 31 223.265 179.758 120.647 1 31.31 ? C12 CDL 701 l 1 
HETATM 16 C C13 CDL . . . PA 31 222.187 180.557 119.93 1 31.31 ? C13 CDL 701 l 1 
HETATM 17 C C14 CDL . . . PA 31 222.556 180.727 118.461 1 31.31 ? C14 CDL 701 l 1 
HETATM 18 C C15 CDL . . . PA 31 221.588 181.665 117.751 1 31.31 ? C15 CDL 701 l 1 
HETATM 19 C C16 CDL . . . PA 31 221.795 181.604 116.244 1 31.31 ? C16 CDL 701 l 1 
HETATM 20 C C17 CDL . . . PA 31 221.891 180.154 115.795 1 31.31 ? C17 CDL 701 l 1 
HETATM 21 C C18 CDL . . . PA 31 221.742 180.026 114.286 1 31.31 ? C18 CDL 701 l 1 
HETATM 22 C C19 CDL . . . PA 31 222.913 180.673 113.561 1 31.31 ? C19 CDL 701 l 1 
HETATM 23 C C20 CDL . . . PA 31 222.946 180.234 112.105 1 31.31 ? C20 CDL 701 l 1 
HETATM 24 C C21 CDL . . . PA 31 223.45 178.802 111.988 1 31.31 ? C21 CDL 701 l 1 
HETATM 25 C C22 CDL . . . PA 31 223.449 178.349 110.534 1 31.31 ? C22 CDL 701 l 1 
HETATM 26 C C23 CDL . . . PA 31 224.087 179.406 109.643 1 31.31 ? C23 CDL 701 l 1 
HETATM 27 C C24 CDL . . . PA 31 223.873 179.081 108.171 1 31.31 ? C24 CDL 701 l 1 
HETATM 28 C C25 CDL . . . PA 31 224.572 180.104 107.287 1 31.31 ? C25 CDL 701 l 1 
HETATM 29 C C26 CDL . . . PA 31 226.045 180.211 107.659 1 31.31 ? C26 CDL 701 l 1 
HETATM 30 C C27 CDL . . . PA 31 226.672 178.838 107.763 1 31.31 ? C27 CDL 701 l 1 
HETATM 31 C CA6 CDL . . . PA 31 224.986 176.74 122.402 1 31.31 ? CA6 CDL 701 l 1 
HETATM 32 O OA8 CDL . . . PA 31 223.977 175.748 122.589 1 31.31 ? OA8 CDL 701 l 1 
HETATM 33 C CA7 CDL . . . PA 31 222.855 175.69 121.667 1 31.31 ? CA7 CDL 701 l 1 
HETATM 34 O OA9 CDL . . . PA 31 221.909 176.441 121.828 1 31.31 ? OA9 CDL 701 l 1 
HETATM 35 C C31 CDL . . . PA 31 222.857 174.694 120.535 1 31.31 ? C31 CDL 701 l 1 
HETATM 36 C C32 CDL . . . PA 31 221.633 174.915 119.655 1 31.31 ? C32 CDL 701 l 1 
HETATM 37 C C33 CDL . . . PA 31 221.586 176.338 119.116 1 31.31 ? C33 CDL 701 l 1 
HETATM 38 C C34 CDL . . . PA 31 220.484 176.486 118.074 1 31.31 ? C34 CDL 701 l 1 
HETATM 39 C C35 CDL . . . PA 31 219.103 176.414 118.713 1 31.31 ? C35 CDL 701 l 1 
HETATM 40 C C36 CDL . . . PA 31 218.025 176.293 117.643 1 31.31 ? C36 CDL 701 l 1 
HETATM 41 C C37 CDL . . . PA 31 217.972 177.529 116.753 1 31.31 ? C37 CDL 701 l 1 
HETATM 42 C C38 CDL . . . PA 31 217.808 177.129 115.294 1 31.31 ? C38 CDL 701 l 1 
HETATM 43 C C39 CDL . . . PA 31 219.163 176.808 114.677 1 31.31 ? C39 CDL 701 l 1 
HETATM 44 C C40 CDL . . . PA 31 219.08 175.619 113.727 1 31.31 ? C40 CDL 701 l 1 
HETATM 45 C C41 CDL . . . PA 31 220.407 175.415 113.006 1 31.31 ? C41 CDL 701 l 1 
HETATM 46 C C42 CDL . . . PA 31 220.59 173.962 112.59 1 31.31 ? C42 CDL 701 l 1 
HETATM 47 C C43 CDL . . . PA 31 221.791 173.805 111.666 1 31.31 ? C43 CDL 701 l 1 
HETATM 48 C C44 CDL . . . PA 31 222.256 172.355 111.611 1 31.31 ? C44 CDL 701 l 1 
HETATM 49 C C45 CDL . . . PA 31 222.79 171.916 112.968 1 31.31 ? C45 CDL 701 l 1 
HETATM 50 C C46 CDL . . . PA 31 223.24 170.461 112.948 1 31.31 ? C46 CDL 701 l 1 
HETATM 51 C C47 CDL . . . PA 31 223.524 169.977 114.353 1 31.31 ? C47 CDL 701 l 1 
HETATM 52 C CB2 CDL . . . PA 31 227.278 174.025 130.388 1 31.31 ? CB2 CDL 701 l 1 
HETATM 53 O OB2 CDL . . . PA 31 227.916 173.903 129.119 1 31.31 ? OB2 CDL 701 l 1 
HETATM 54 P PB2 CDL . . . PA 31 229.049 172.786 128.891 1 31.31 ? PB2 CDL 701 l 1 
HETATM 55 O OB3 CDL . . . PA 31 228.405 171.432 129.026 1 31.31 ? OB3 CDL 701 l 1 
HETATM 56 O OB4 CDL . . . PA 31 230.247 173.13 129.738 1 31.31 ? OB4 CDL 701 l 1 
HETATM 57 O OB5 CDL . . . PA 31 229.432 172.998 127.347 1 31.31 ? OB5 CDL 701 l 1 
HETATM 58 C CB3 CDL . . . PA 31 229.838 171.9 126.537 1 31.31 ? CB3 CDL 701 l 1 
HETATM 59 C CB4 CDL . . . PA 31 229.006 171.943 125.265 1 31.31 ? CB4 CDL 701 l 1 
HETATM 60 O OB6 CDL . . . PA 31 229.116 173.238 124.692 1 31.31 ? OB6 CDL 701 l 1 
HETATM 61 C CB5 CDL . . . PA 31 228.66 173.259 123.315 1 31.31 ? CB5 CDL 701 l 1 
HETATM 62 O OB7 CDL . . . PA 31 228.723 172.236 122.657 1 31.31 ? OB7 CDL 701 l 1 
HETATM 63 C C51 CDL . . . PA 31 228.109 174.536 122.726 1 31.31 ? C51 CDL 701 l 1 
HETATM 64 C C52 CDL . . . PA 31 227.985 174.403 121.215 1 31.31 ? C52 CDL 701 l 1 
HETATM 65 C C53 CDL . . . PA 31 228.15 175.768 120.562 1 31.31 ? C53 CDL 701 l 1 
HETATM 66 C C54 CDL . . . PA 31 226.811 176.412 120.231 1 31.31 ? C54 CDL 701 l 1 
HETATM 67 C C55 CDL . . . PA 31 226.505 176.271 118.746 1 31.31 ? C55 CDL 701 l 1 
HETATM 68 C C56 CDL . . . PA 31 225.413 177.244 118.319 1 31.31 ? C56 CDL 701 l 1 
HETATM 69 C C57 CDL . . . PA 31 225.554 177.587 116.843 1 31.31 ? C57 CDL 701 l 1 
HETATM 70 C C58 CDL . . . PA 31 225.636 176.323 115.999 1 31.31 ? C58 CDL 701 l 1 
HETATM 71 C C59 CDL . . . PA 31 224.249 175.779 115.684 1 31.31 ? C59 CDL 701 l 1 
HETATM 72 C C60 CDL . . . PA 31 224.332 174.32 115.257 1 31.31 ? C60 CDL 701 l 1 
HETATM 73 C C61 CDL . . . PA 31 225.684 174.009 114.627 1 31.31 ? C61 CDL 701 l 1 
HETATM 74 C C62 CDL . . . PA 31 225.929 174.843 113.374 1 31.31 ? C62 CDL 701 l 1 
HETATM 75 C C63 CDL . . . PA 31 227.233 174.429 112.701 1 31.31 ? C63 CDL 701 l 1 
HETATM 76 C C64 CDL . . . PA 31 227.512 175.266 111.458 1 31.31 ? C64 CDL 701 l 1 
HETATM 77 C C65 CDL . . . PA 31 228.896 174.967 110.893 1 31.31 ? C65 CDL 701 l 1 
HETATM 78 C C66 CDL . . . PA 31 229.202 175.845 109.686 1 31.31 ? C66 CDL 701 l 1 
HETATM 79 C CB6 CDL . . . PA 31 227.553 171.711 125.652 1 31.31 ? CB6 CDL 701 l 1 
HETATM 80 O OB8 CDL . . . PA 31 226.764 171.457 124.495 1 31.31 ? OB8 CDL 701 l 1 
HETATM 81 C CB7 CDL . . . PA 31 225.441 170.888 124.678 1 31.31 ? CB7 CDL 701 l 1 
HETATM 82 O OB9 CDL . . . PA 31 224.968 170.882 125.799 1 31.31 ? OB9 CDL 701 l 1 
HETATM 83 C C71 CDL . . . PA 31 224.668 170.301 123.522 1 31.31 ? C71 CDL 701 l 1 
HETATM 84 C C72 CDL . . . PA 31 224.207 171.41 122.587 1 31.31 ? C72 CDL 701 l 1 
HETATM 85 C C73 CDL . . . PA 31 222.922 171.01 121.872 1 31.31 ? C73 CDL 701 l 1 
HETATM 86 C C74 CDL . . . PA 31 222.717 171.843 120.614 1 31.31 ? C74 CDL 701 l 1 
HETATM 87 C C75 CDL . . . PA 31 223.763 171.492 119.562 1 31.31 ? C75 CDL 701 l 1 
HETATM 88 C C76 CDL . . . PA 31 223.832 172.551 118.469 1 31.31 ? C76 CDL 701 l 1 
HETATM 89 C C77 CDL . . . PA 31 224.585 172.016 117.257 1 31.31 ? C77 CDL 701 l 1 
HETATM 90 C C78 CDL . . . PA 31 226.077 171.877 117.53 1 31.31 ? C78 CDL 701 l 1 
HETATM 91 C C79 CDL . . . PA 31 226.815 173.18 117.238 1 31.31 ? C79 CDL 701 l 1 
HETATM 92 C C80 CDL . . . PA 31 228.29 172.916 116.953 1 31.31 ? C80 CDL 701 l 1 
HETATM 93 C C81 CDL . . . PA 31 228.91 174.053 116.147 1 31.31 ? C81 CDL 701 l 1 
HETATM 94 C C82 CDL . . . PA 31 229.865 173.501 115.096 1 31.31 ? C82 CDL 701 l 1 
HETATM 95 C C83 CDL . . . PA 31 230.603 174.608 114.351 1 31.31 ? C83 CDL 701 l 1 
HETATM 96 C C84 CDL . . . PA 31 229.657 175.658 113.781 1 31.31 ? C84 CDL 701 l 1 
HETATM 97 C C85 CDL . . . PA 31 229.28 176.692 114.835 1 31.31 ? C85 CDL 701 l 1 
HETATM 98 C C86 CDL . . . PA 31 228.971 178.048 114.207 1 31.31 ? C86 CDL 701 l 1 
HETATM 99 C C87 CDL . . . PA 31 227.595 178.078 113.582 1 31.31 ? C87 CDL 701 l 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    232 
_model_server_stats.query_time_ms           1254 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           99 
#