data_7VYE
#
_model_server_result.job_id            m-4gglfUIc_TjLtyd5Ms3Q 
_model_server_result.datetime_utc      '2024-12-21 16:51:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vye 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"QA","auth_seq_id":702}' 
#
_entry.id    7VYE 
#
_exptl.entry_id    7VYE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VYE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 31 FA N N 
? 31 HA N N 
? 31 LA N N 
? 31 MA N N 
? 31 PA N N 
? 31 QA N N 
? 31 SA N N 
? 31 YA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
disulf ? disulf5 BA SG CYS 69 v CYS 69 1_555 BA SG CYS 80 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VYE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE U 1 101 101 PEE PEE . 
EA 30 PEE V 1 201 207 PEE PEE . 
FA 31 CDL V 1 202 201 CDL CDL . 
GA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
HA 31 CDL a 1 201 201 CDL CDL . 
IA 33 PLX a 1 202 101 PLX PLX . 
JA 30 PEE b 1 201 720 PEE PEE . 
KA 33 PLX g 1 201 705 PLX PLX . 
LA 31 CDL g 1 202 714 CDL CDL . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 30 PEE i 1 402 718 PEE PEE . 
OA 33 PLX j 1 201 203 PLX PLX . 
PA 31 CDL l 1 701 712 CDL CDL . 
QA 31 CDL l 1 702 713 CDL CDL . 
RA 30 PEE l 1 703 719 PEE PEE . 
SA 31 CDL o 1 201 203 CDL CDL . 
TA 30 PEE r 1 501 202 PEE PEE . 
UA 33 PLX r 1 502 201 PLX PLX . 
VA 30 PEE s 1 401 202 PEE PEE . 
WA 30 PEE s 1 402 401 PEE PEE . 
XA 34 UQ s 1 403 403 UQ UQ . 
YA 31 CDL u 1 201 102 CDL CDL . 
ZA 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . QA 31 220.73 222.292 136.345 1 57.72 ? C1 CDL 702 l 1 
HETATM 2 O O1 CDL . . . QA 31 220.859 222.813 135.056 1 57.72 ? O1 CDL 702 l 1 
HETATM 3 C CA2 CDL . . . QA 31 219.236 222.397 136.741 1 57.72 ? CA2 CDL 702 l 1 
HETATM 4 O OA2 CDL . . . QA 31 218.497 222.552 135.538 1 57.72 ? OA2 CDL 702 l 1 
HETATM 5 P PA1 CDL . . . QA 31 217.518 223.876 135.351 1 57.72 ? PA1 CDL 702 l 1 
HETATM 6 O OA3 CDL . . . QA 31 216.078 223.434 135.374 1 57.72 ? OA3 CDL 702 l 1 
HETATM 7 O OA4 CDL . . . QA 31 217.759 224.839 136.472 1 57.72 ? OA4 CDL 702 l 1 
HETATM 8 O OA5 CDL . . . QA 31 217.853 224.618 133.901 1 57.72 ? OA5 CDL 702 l 1 
HETATM 9 C CA3 CDL . . . QA 31 216.849 225.44 133.327 1 57.72 ? CA3 CDL 702 l 1 
HETATM 10 C CA4 CDL . . . QA 31 217.33 225.995 131.992 1 57.72 ? CA4 CDL 702 l 1 
HETATM 11 O OA6 CDL . . . QA 31 216.62 225.392 130.947 1 57.72 ? OA6 CDL 702 l 1 
HETATM 12 C CA5 CDL . . . QA 31 215.546 226.178 130.445 1 57.72 ? CA5 CDL 702 l 1 
HETATM 13 O OA7 CDL . . . QA 31 215.102 227.072 131.098 1 57.72 ? OA7 CDL 702 l 1 
HETATM 14 C C11 CDL . . . QA 31 214.952 225.87 129.036 1 57.72 ? C11 CDL 702 l 1 
HETATM 15 C C12 CDL . . . QA 31 215.636 226.686 127.933 1 57.72 ? C12 CDL 702 l 1 
HETATM 16 C C13 CDL . . . QA 31 214.884 226.653 126.603 1 57.72 ? C13 CDL 702 l 1 
HETATM 17 C C14 CDL . . . QA 31 213.702 225.665 126.606 1 57.72 ? C14 CDL 702 l 1 
HETATM 18 C C15 CDL . . . QA 31 212.519 226.158 125.726 1 57.72 ? C15 CDL 702 l 1 
HETATM 19 C C16 CDL . . . QA 31 211.475 225.042 125.471 1 57.72 ? C16 CDL 702 l 1 
HETATM 20 C C17 CDL . . . QA 31 210.24 225.167 126.412 1 57.72 ? C17 CDL 702 l 1 
HETATM 21 C C18 CDL . . . QA 31 208.935 224.684 125.73 1 57.72 ? C18 CDL 702 l 1 
HETATM 22 C C19 CDL . . . QA 31 207.671 225.098 126.535 1 57.72 ? C19 CDL 702 l 1 
HETATM 23 C C20 CDL . . . QA 31 206.415 225.229 125.641 1 57.72 ? C20 CDL 702 l 1 
HETATM 24 C C21 CDL . . . QA 31 206.703 226.028 124.343 1 57.72 ? C21 CDL 702 l 1 
HETATM 25 C C22 CDL . . . QA 31 205.534 225.928 123.323 1 57.72 ? C22 CDL 702 l 1 
HETATM 26 C C23 CDL . . . QA 31 205.268 224.472 122.878 1 57.72 ? C23 CDL 702 l 1 
HETATM 27 C C24 CDL . . . QA 31 203.785 224.236 122.494 1 57.72 ? C24 CDL 702 l 1 
HETATM 28 C C25 CDL . . . QA 31 203.521 222.788 122.045 1 57.72 ? C25 CDL 702 l 1 
HETATM 29 C C26 CDL . . . QA 31 202.119 222.62 121.415 1 57.72 ? C26 CDL 702 l 1 
HETATM 30 C C27 CDL . . . QA 31 201.955 221.267 120.713 1 57.72 ? C27 CDL 702 l 1 
HETATM 31 C CA6 CDL . . . QA 31 218.828 225.708 131.787 1 57.72 ? CA6 CDL 702 l 1 
HETATM 32 O OA8 CDL . . . QA 31 219.008 225.375 130.424 1 57.72 ? OA8 CDL 702 l 1 
HETATM 33 C CA7 CDL . . . QA 31 219.62 226.402 129.639 1 57.72 ? CA7 CDL 702 l 1 
HETATM 34 O OA9 CDL . . . QA 31 219.559 227.529 129.989 1 57.72 ? OA9 CDL 702 l 1 
HETATM 35 C C31 CDL . . . QA 31 220.36 226.04 128.337 1 57.72 ? C31 CDL 702 l 1 
HETATM 36 C C32 CDL . . . QA 31 219.48 226.192 127.1 1 57.72 ? C32 CDL 702 l 1 
HETATM 37 C C33 CDL . . . QA 31 220.281 226.621 125.864 1 57.72 ? C33 CDL 702 l 1 
HETATM 38 C C34 CDL . . . QA 31 220.209 228.146 125.622 1 57.72 ? C34 CDL 702 l 1 
HETATM 39 C C35 CDL . . . QA 31 220.513 228.523 124.149 1 57.72 ? C35 CDL 702 l 1 
HETATM 40 C C36 CDL . . . QA 31 219.237 228.869 123.348 1 57.72 ? C36 CDL 702 l 1 
HETATM 41 C C37 CDL . . . QA 31 219.512 229.817 122.167 1 57.72 ? C37 CDL 702 l 1 
HETATM 42 C C38 CDL . . . QA 31 220.794 230.64 122.345 1 57.72 ? C38 CDL 702 l 1 
HETATM 43 C C39 CDL . . . QA 31 221.193 231.373 121.05 1 57.72 ? C39 CDL 702 l 1 
HETATM 44 C C40 CDL . . . QA 31 222.217 230.569 120.22 1 57.72 ? C40 CDL 702 l 1 
HETATM 45 C C41 CDL . . . QA 31 222.335 231.089 118.746 1 57.72 ? C41 CDL 702 l 1 
HETATM 46 C C42 CDL . . . QA 31 221.012 231.723 118.24 1 57.72 ? C42 CDL 702 l 1 
HETATM 47 C C43 CDL . . . QA 31 220.591 231.195 116.838 1 57.72 ? C43 CDL 702 l 1 
HETATM 48 C C44 CDL . . . QA 31 221.743 231.264 115.801 1 57.72 ? C44 CDL 702 l 1 
HETATM 49 C C45 CDL . . . QA 31 221.218 231.384 114.373 1 57.72 ? C45 CDL 702 l 1 
HETATM 50 C C46 CDL . . . QA 31 220.946 232.848 113.975 1 57.72 ? C46 CDL 702 l 1 
HETATM 51 C C47 CDL . . . QA 31 219.57 233.037 113.344 1 57.72 ? C47 CDL 702 l 1 
HETATM 52 C CB2 CDL . . . QA 31 221.259 220.818 136.315 1 57.72 ? CB2 CDL 702 l 1 
HETATM 53 O OB2 CDL . . . QA 31 222.342 220.779 135.395 1 57.72 ? OB2 CDL 702 l 1 
HETATM 54 P PB2 CDL . . . QA 31 223.044 219.305 135.013 1 57.72 ? PB2 CDL 702 l 1 
HETATM 55 O OB3 CDL . . . QA 31 224.331 219.135 135.796 1 57.72 ? OB3 CDL 702 l 1 
HETATM 56 O OB4 CDL . . . QA 31 222.095 218.187 135.361 1 57.72 ? OB4 CDL 702 l 1 
HETATM 57 O OB5 CDL . . . QA 31 223.377 219.281 133.372 1 57.72 ? OB5 CDL 702 l 1 
HETATM 58 C CB3 CDL . . . QA 31 223.375 220.519 132.672 1 57.72 ? CB3 CDL 702 l 1 
HETATM 59 C CB4 CDL . . . QA 31 222.642 220.336 131.336 1 57.72 ? CB4 CDL 702 l 1 
HETATM 60 O OB6 CDL . . . QA 31 222.859 221.467 130.532 1 57.72 ? OB6 CDL 702 l 1 
HETATM 61 C CB5 CDL . . . QA 31 223.801 221.286 129.481 1 57.72 ? CB5 CDL 702 l 1 
HETATM 62 O OB7 CDL . . . QA 31 224.6 220.414 129.537 1 57.72 ? OB7 CDL 702 l 1 
HETATM 63 C C51 CDL . . . QA 31 223.776 222.231 128.266 1 57.72 ? C51 CDL 702 l 1 
HETATM 64 C C52 CDL . . . QA 31 222.362 222.35 127.681 1 57.72 ? C52 CDL 702 l 1 
HETATM 65 C C53 CDL . . . QA 31 222.364 222.248 126.15 1 57.72 ? C53 CDL 702 l 1 
HETATM 66 C C54 CDL . . . QA 31 222.767 223.585 125.503 1 57.72 ? C54 CDL 702 l 1 
HETATM 67 C C55 CDL . . . QA 31 223.923 223.442 124.505 1 57.72 ? C55 CDL 702 l 1 
HETATM 68 C C56 CDL . . . QA 31 223.442 223.565 123.036 1 57.72 ? C56 CDL 702 l 1 
HETATM 69 C C57 CDL . . . QA 31 222.047 224.213 122.925 1 57.72 ? C57 CDL 702 l 1 
HETATM 70 C C58 CDL . . . QA 31 222.004 225.368 121.896 1 57.72 ? C58 CDL 702 l 1 
HETATM 71 C C59 CDL . . . QA 31 221.376 224.918 120.556 1 57.72 ? C59 CDL 702 l 1 
HETATM 72 C C60 CDL . . . QA 31 220.011 225.583 120.295 1 57.72 ? C60 CDL 702 l 1 
HETATM 73 C C61 CDL . . . QA 31 219.97 226.428 118.99 1 57.72 ? C61 CDL 702 l 1 
HETATM 74 C C62 CDL . . . QA 31 221.318 226.476 118.238 1 57.72 ? C62 CDL 702 l 1 
HETATM 75 C C63 CDL . . . QA 31 221.364 225.492 117.06 1 57.72 ? C63 CDL 702 l 1 
HETATM 76 C C64 CDL . . . QA 31 222.675 225.583 116.262 1 57.72 ? C64 CDL 702 l 1 
HETATM 77 C C65 CDL . . . QA 31 222.44 225.583 114.756 1 57.72 ? C65 CDL 702 l 1 
HETATM 78 C C66 CDL . . . QA 31 221.745 226.851 114.275 1 57.72 ? C66 CDL 702 l 1 
HETATM 79 C C67 CDL . . . QA 31 220.295 226.607 113.857 1 57.72 ? C67 CDL 702 l 1 
HETATM 80 C CB6 CDL . . . QA 31 221.145 220.211 131.584 1 57.72 ? CB6 CDL 702 l 1 
HETATM 81 O OB8 CDL . . . QA 31 220.516 221.316 130.943 1 57.72 ? OB8 CDL 702 l 1 
HETATM 82 C CB7 CDL . . . QA 31 219.196 221.061 130.5 1 57.72 ? CB7 CDL 702 l 1 
HETATM 83 O OB9 CDL . . . QA 31 218.323 220.919 131.29 1 57.72 ? OB9 CDL 702 l 1 
HETATM 84 C C71 CDL . . . QA 31 218.897 220.971 128.986 1 57.72 ? C71 CDL 702 l 1 
HETATM 85 C C72 CDL . . . QA 31 217.606 221.701 128.592 1 57.72 ? C72 CDL 702 l 1 
HETATM 86 C C73 CDL . . . QA 31 217.883 222.958 127.75 1 57.72 ? C73 CDL 702 l 1 
HETATM 87 C C74 CDL . . . QA 31 218.475 222.63 126.371 1 57.72 ? C74 CDL 702 l 1 
HETATM 88 C C75 CDL . . . QA 31 217.471 222.896 125.215 1 57.72 ? C75 CDL 702 l 1 
HETATM 89 C C76 CDL . . . QA 31 218.183 223.293 123.895 1 57.72 ? C76 CDL 702 l 1 
HETATM 90 C C77 CDL . . . QA 31 217.679 222.453 122.684 1 57.72 ? C77 CDL 702 l 1 
HETATM 91 C C78 CDL . . . QA 31 216.264 222.857 122.247 1 57.72 ? C78 CDL 702 l 1 
HETATM 92 C C79 CDL . . . QA 31 215.6 221.806 121.331 1 57.72 ? C79 CDL 702 l 1 
HETATM 93 C C80 CDL . . . QA 31 214.146 222.195 120.958 1 57.72 ? C80 CDL 702 l 1 
HETATM 94 C C81 CDL . . . QA 31 213.565 221.314 119.852 1 57.72 ? C81 CDL 702 l 1 
HETATM 95 C C82 CDL . . . QA 31 212.03 221.509 119.684 1 57.72 ? C82 CDL 702 l 1 
HETATM 96 C C83 CDL . . . QA 31 211.236 220.9 120.854 1 57.72 ? C83 CDL 702 l 1 
HETATM 97 C C84 CDL . . . QA 31 210.033 221.781 121.267 1 57.72 ? C84 CDL 702 l 1 
HETATM 98 C C85 CDL . . . QA 31 209.032 221.036 122.171 1 57.72 ? C85 CDL 702 l 1 
HETATM 99 C C86 CDL . . . QA 31 207.904 221.952 122.654 1 57.72 ? C86 CDL 702 l 1 
HETATM 100 C C87 CDL . . . QA 31 206.899 221.229 123.55 1 57.72 ? C87 CDL 702 l 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    116 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           100 
#