data_7VYG # _model_server_result.job_id WM1UOJOwTgF0NQBvM-Lyfw _model_server_result.datetime_utc '2024-12-21 17:16:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":101}' # _entry.id 7VYG # _exptl.entry_id 7VYG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 30 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 30 DA N N ? 30 EA N N ? 30 HA N N ? 30 MA N N ? 30 OA N N ? 30 PA N N ? 30 SA N N ? 30 VA N N ? 30 WA N N ? 30 ZA N N ? 30 EB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 7VYG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 30 PEE U 1 401 401 PEE PEE . FA 31 CDL V 1 201 201 CDL CDL . GA 31 CDL V 1 202 203 CDL CDL . HA 30 PEE W 1 201 202 PEE PEE . IA 32 8Q1 X 1 201 201 8Q1 8Q1 . JA 31 CDL a 1 201 201 CDL CDL . KA 33 PLX a 1 202 101 PLX PLX . LA 33 PLX e 1 201 201 PLX PLX . MA 30 PEE f 1 101 101 PEE PEE . NA 33 PLX g 1 201 705 PLX PLX . OA 30 PEE j 1 201 101 PEE PEE . PA 30 PEE j 1 202 201 PEE PEE . QA 33 PLX j 1 203 202 PLX PLX . RA 33 PLX j 1 204 203 PLX PLX . SA 30 PEE l 1 701 207 PEE PEE . TA 31 CDL l 1 702 712 CDL CDL . UA 31 CDL l 1 703 713 CDL CDL . VA 30 PEE l 1 704 719 PEE PEE . WA 30 PEE l 1 705 720 PEE PEE . XA 31 CDL m 1 201 101 CDL CDL . YA 31 CDL n 1 101 102 CDL CDL . ZA 30 PEE r 1 501 202 PEE PEE . AB 33 PLX r 1 502 205 PLX PLX . BB 31 CDL r 1 503 714 CDL CDL . CB 31 CDL s 1 401 201 CDL CDL . DB 34 UQ s 1 402 402 UQ UQ . EB 30 PEE v 1 201 101 PEE PEE . FB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . DA 30 183.186 181.23 118.503 1 27.38 ? C27 PEE 101 Q 1 HETATM 2 C C26 PEE . . . DA 30 183.046 181.522 119.997 1 27.38 ? C26 PEE 101 Q 1 HETATM 3 C C25 PEE . . . DA 30 184.145 180.86 120.82 1 27.38 ? C25 PEE 101 Q 1 HETATM 4 C C24 PEE . . . DA 30 183.707 179.525 121.419 1 27.38 ? C24 PEE 101 Q 1 HETATM 5 C C23 PEE . . . DA 30 184.693 179.01 122.467 1 27.38 ? C23 PEE 101 Q 1 HETATM 6 C C22 PEE . . . DA 30 185.036 180.062 123.521 1 27.38 ? C22 PEE 101 Q 1 HETATM 7 C C21 PEE . . . DA 30 186.529 180.404 123.551 1 27.38 ? C21 PEE 101 Q 1 HETATM 8 C C20 PEE . . . DA 30 186.876 181.398 124.66 1 27.38 ? C20 PEE 101 Q 1 HETATM 9 C C19 PEE . . . DA 30 187.677 180.759 125.796 1 27.38 ? C19 PEE 101 Q 1 HETATM 10 C C18 PEE . . . DA 30 186.828 179.83 126.662 1 27.38 ? C18 PEE 101 Q 1 HETATM 11 C C17 PEE . . . DA 30 187.558 179.392 127.931 1 27.38 ? C17 PEE 101 Q 1 HETATM 12 C C16 PEE . . . DA 30 186.706 178.444 128.771 1 27.38 ? C16 PEE 101 Q 1 HETATM 13 C C15 PEE . . . DA 30 187.457 177.914 129.991 1 27.38 ? C15 PEE 101 Q 1 HETATM 14 C C14 PEE . . . DA 30 186.978 178.568 131.289 1 27.38 ? C14 PEE 101 Q 1 HETATM 15 C C13 PEE . . . DA 30 187.655 177.961 132.522 1 27.38 ? C13 PEE 101 Q 1 HETATM 16 C C12 PEE . . . DA 30 186.948 178.352 133.825 1 27.38 ? C12 PEE 101 Q 1 HETATM 17 C C11 PEE . . . DA 30 185.437 178.108 133.761 1 27.38 ? C11 PEE 101 Q 1 HETATM 18 C C10 PEE . . . DA 30 184.776 178.191 135.144 1 27.38 ? C10 PEE 101 Q 1 HETATM 19 O O4 PEE . . . DA 30 185.249 178.885 135.976 1 27.38 ? O4 PEE 101 Q 1 HETATM 20 O O2 PEE . . . DA 30 183.613 177.456 135.427 1 27.38 ? O2 PEE 101 Q 1 HETATM 21 C C2 PEE . . . DA 30 183.42 176.327 134.62 1 27.38 ? C2 PEE 101 Q 1 HETATM 22 C C1 PEE . . . DA 30 183.19 175.099 135.499 1 27.38 ? C1 PEE 101 Q 1 HETATM 23 O O3P PEE . . . DA 30 183.777 175.326 136.753 1 27.38 ? O3P PEE 101 Q 1 HETATM 24 P P PEE . . . DA 30 184.816 174.188 137.356 1 27.38 ? P PEE 101 Q 1 HETATM 25 O O2P PEE . . . DA 30 184.833 172.975 136.456 1 27.38 ? O2P PEE 101 Q 1 HETATM 26 O O1P PEE . . . DA 30 186.208 174.766 137.435 1 27.38 ? O1P PEE 101 Q 1 HETATM 27 O O4P PEE . . . DA 30 184.322 173.743 138.869 1 27.38 ? O4P PEE 101 Q 1 HETATM 28 C C4 PEE . . . DA 30 183.872 174.744 139.746 1 27.38 ? C4 PEE 101 Q 1 HETATM 29 C C5 PEE . . . DA 30 182.931 174.101 140.766 1 27.38 ? C5 PEE 101 Q 1 HETATM 30 N N PEE . . . DA 30 183.671 173.675 141.939 1 27.38 ? N PEE 101 Q 1 HETATM 31 C C3 PEE . . . DA 30 182.206 176.546 133.721 1 27.38 ? C3 PEE 101 Q 1 HETATM 32 O O3 PEE . . . DA 30 182.137 175.472 132.827 1 27.38 ? O3 PEE 101 Q 1 HETATM 33 C C30 PEE . . . DA 30 181.899 175.847 131.501 1 27.38 ? C30 PEE 101 Q 1 HETATM 34 O O5 PEE . . . DA 30 180.789 175.914 131.098 1 27.38 ? O5 PEE 101 Q 1 HETATM 35 C C31 PEE . . . DA 30 183.065 176.168 130.568 1 27.38 ? C31 PEE 101 Q 1 HETATM 36 C C32 PEE . . . DA 30 182.65 176.058 129.101 1 27.38 ? C32 PEE 101 Q 1 HETATM 37 C C33 PEE . . . DA 30 183.843 176.168 128.149 1 27.38 ? C33 PEE 101 Q 1 HETATM 38 C C34 PEE . . . DA 30 183.537 175.56 126.781 1 27.38 ? C34 PEE 101 Q 1 HETATM 39 C C35 PEE . . . DA 30 184.305 176.257 125.657 1 27.38 ? C35 PEE 101 Q 1 HETATM 40 C C36 PEE . . . DA 30 183.759 175.878 124.279 1 27.38 ? C36 PEE 101 Q 1 HETATM 41 C C37 PEE . . . DA 30 182.326 176.365 124.072 1 27.38 ? C37 PEE 101 Q 1 HETATM 42 C C38 PEE . . . DA 30 181.692 175.78 122.811 1 27.38 ? C38 PEE 101 Q 1 HETATM 43 C C39 PEE . . . DA 30 180.49 176.592 122.344 1 27.38 ? C39 PEE 101 Q 1 HETATM 44 C C40 PEE . . . DA 30 179.288 175.71 122.026 1 27.38 ? C40 PEE 101 Q 1 HETATM 45 C C41 PEE . . . DA 30 178.171 176.495 121.352 1 27.38 ? C41 PEE 101 Q 1 HETATM 46 C C42 PEE . . . DA 30 176.845 175.746 121.359 1 27.38 ? C42 PEE 101 Q 1 HETATM 47 C C43 PEE . . . DA 30 175.888 176.275 120.295 1 27.38 ? C43 PEE 101 Q 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #