data_7VYG # _model_server_result.job_id eRagn7f4GtydB2JiHFw5dg _model_server_result.datetime_utc '2024-12-30 18:06:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":101}' # _entry.id 7VYG # _exptl.entry_id 7VYG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 FA N N ? 31 GA N N ? 31 JA N N ? 31 TA N N ? 31 UA N N ? 31 XA N N ? 31 YA N N ? 31 BB N N ? 31 CB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VYG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 30 PEE U 1 401 401 PEE PEE . FA 31 CDL V 1 201 201 CDL CDL . GA 31 CDL V 1 202 203 CDL CDL . HA 30 PEE W 1 201 202 PEE PEE . IA 32 8Q1 X 1 201 201 8Q1 8Q1 . JA 31 CDL a 1 201 201 CDL CDL . KA 33 PLX a 1 202 101 PLX PLX . LA 33 PLX e 1 201 201 PLX PLX . MA 30 PEE f 1 101 101 PEE PEE . NA 33 PLX g 1 201 705 PLX PLX . OA 30 PEE j 1 201 101 PEE PEE . PA 30 PEE j 1 202 201 PEE PEE . QA 33 PLX j 1 203 202 PLX PLX . RA 33 PLX j 1 204 203 PLX PLX . SA 30 PEE l 1 701 207 PEE PEE . TA 31 CDL l 1 702 712 CDL CDL . UA 31 CDL l 1 703 713 CDL CDL . VA 30 PEE l 1 704 719 PEE PEE . WA 30 PEE l 1 705 720 PEE PEE . XA 31 CDL m 1 201 101 CDL CDL . YA 31 CDL n 1 101 102 CDL CDL . ZA 30 PEE r 1 501 202 PEE PEE . AB 33 PLX r 1 502 205 PLX PLX . BB 31 CDL r 1 503 714 CDL CDL . CB 31 CDL s 1 401 201 CDL CDL . DB 34 UQ s 1 402 402 UQ UQ . EB 30 PEE v 1 201 101 PEE PEE . FB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . YA 31 209.6 157.748 99.423 1 33.55 ? C1 CDL 101 n 1 HETATM 2 O O1 CDL . . . YA 31 210.744 157.903 100.21 1 33.55 ? O1 CDL 101 n 1 HETATM 3 C CA2 CDL . . . YA 31 209.223 156.244 99.434 1 33.55 ? CA2 CDL 101 n 1 HETATM 4 O OA2 CDL . . . YA 31 210.209 155.523 100.157 1 33.55 ? OA2 CDL 101 n 1 HETATM 5 P PA1 CDL . . . YA 31 209.99 153.89 100.344 1 33.55 ? PA1 CDL 101 n 1 HETATM 6 O OA3 CDL . . . YA 31 208.52 153.573 100.225 1 33.55 ? OA3 CDL 101 n 1 HETATM 7 O OA4 CDL . . . YA 31 210.738 153.151 99.277 1 33.55 ? OA4 CDL 101 n 1 HETATM 8 O OA5 CDL . . . YA 31 210.546 153.433 101.842 1 33.55 ? OA5 CDL 101 n 1 HETATM 9 C CA3 CDL . . . YA 31 210.51 152.059 102.19 1 33.55 ? CA3 CDL 101 n 1 HETATM 10 C CA4 CDL . . . YA 31 210.685 151.94 103.697 1 33.55 ? CA4 CDL 101 n 1 HETATM 11 O OA6 CDL . . . YA 31 210.759 153.221 104.259 1 33.55 ? OA6 CDL 101 n 1 HETATM 12 C CA5 CDL . . . YA 31 210.311 153.285 105.606 1 33.55 ? CA5 CDL 101 n 1 HETATM 13 O OA7 CDL . . . YA 31 209.705 152.373 106.075 1 33.55 ? OA7 CDL 101 n 1 HETATM 14 C C11 CDL . . . YA 31 210.617 154.548 106.471 1 33.55 ? C11 CDL 101 n 1 HETATM 15 C C12 CDL . . . YA 31 210.017 154.448 107.877 1 33.55 ? C12 CDL 101 n 1 HETATM 16 C C13 CDL . . . YA 31 208.52 154.754 107.901 1 33.55 ? C13 CDL 101 n 1 HETATM 17 C CA6 CDL . . . YA 31 211.983 151.171 104.01 1 33.55 ? CA6 CDL 101 n 1 HETATM 18 O OA8 CDL . . . YA 31 211.949 150.773 105.366 1 33.55 ? OA8 CDL 101 n 1 HETATM 19 C CA7 CDL . . . YA 31 212.422 149.444 105.603 1 33.55 ? CA7 CDL 101 n 1 HETATM 20 O OA9 CDL . . . YA 31 212.529 148.685 104.704 1 33.55 ? OA9 CDL 101 n 1 HETATM 21 C C31 CDL . . . YA 31 212.789 149.002 107.033 1 33.55 ? C31 CDL 101 n 1 HETATM 22 C C32 CDL . . . YA 31 212.489 147.524 107.276 1 33.55 ? C32 CDL 101 n 1 HETATM 23 C CB2 CDL . . . YA 31 208.467 158.635 100.044 1 33.55 ? CB2 CDL 101 n 1 HETATM 24 O OB2 CDL . . . YA 31 207.695 157.809 100.906 1 33.55 ? OB2 CDL 101 n 1 HETATM 25 P PB2 CDL . . . YA 31 206.102 157.479 100.496 1 33.55 ? PB2 CDL 101 n 1 HETATM 26 O OB3 CDL . . . YA 31 205.703 158.305 99.289 1 33.55 ? OB3 CDL 101 n 1 HETATM 27 O OB4 CDL . . . YA 31 205.966 156.014 100.156 1 33.55 ? OB4 CDL 101 n 1 HETATM 28 O OB5 CDL . . . YA 31 205.111 157.846 101.796 1 33.55 ? OB5 CDL 101 n 1 HETATM 29 C CB3 CDL . . . YA 31 204.136 156.891 102.192 1 33.55 ? CB3 CDL 101 n 1 HETATM 30 C CB4 CDL . . . YA 31 202.956 157.66 102.798 1 33.55 ? CB4 CDL 101 n 1 HETATM 31 O OB6 CDL . . . YA 31 203.455 158.612 103.705 1 33.55 ? OB6 CDL 101 n 1 HETATM 32 C CB5 CDL . . . YA 31 202.745 159.844 103.713 1 33.55 ? CB5 CDL 101 n 1 HETATM 33 O OB7 CDL . . . YA 31 201.95 160.079 102.866 1 33.55 ? OB7 CDL 101 n 1 HETATM 34 C C51 CDL . . . YA 31 203.01 160.872 104.83 1 33.55 ? C51 CDL 101 n 1 HETATM 35 C C52 CDL . . . YA 31 201.777 161.081 105.724 1 33.55 ? C52 CDL 101 n 1 HETATM 36 C C53 CDL . . . YA 31 201.991 160.568 107.157 1 33.55 ? C53 CDL 101 n 1 HETATM 37 C C54 CDL . . . YA 31 201.475 161.565 108.217 1 33.55 ? C54 CDL 101 n 1 HETATM 38 C C55 CDL . . . YA 31 200.191 161.075 108.905 1 33.55 ? C55 CDL 101 n 1 HETATM 39 C C56 CDL . . . YA 31 199.468 162.206 109.682 1 33.55 ? C56 CDL 101 n 1 HETATM 40 C C57 CDL . . . YA 31 199.805 162.188 111.186 1 33.55 ? C57 CDL 101 n 1 HETATM 41 C C58 CDL . . . YA 31 200.582 163.45 111.632 1 33.55 ? C58 CDL 101 n 1 HETATM 42 C C59 CDL . . . YA 31 201.855 163.102 112.441 1 33.55 ? C59 CDL 101 n 1 HETATM 43 C C60 CDL . . . YA 31 201.548 162.209 113.656 1 33.55 ? C60 CDL 101 n 1 HETATM 44 C CB6 CDL . . . YA 31 202.038 156.691 103.532 1 33.55 ? CB6 CDL 101 n 1 HETATM 45 O OB8 CDL . . . YA 31 202.762 156.109 104.611 1 33.55 ? OB8 CDL 101 n 1 HETATM 46 C CB7 CDL . . . YA 31 201.965 155.861 105.753 1 33.55 ? CB7 CDL 101 n 1 HETATM 47 O OB9 CDL . . . YA 31 200.817 155.598 105.626 1 33.55 ? OB9 CDL 101 n 1 HETATM 48 C C71 CDL . . . YA 31 202.585 155.924 107.166 1 33.55 ? C71 CDL 101 n 1 HETATM 49 C C72 CDL . . . YA 31 204.111 156.074 107.13 1 33.55 ? C72 CDL 101 n 1 HETATM 50 C C73 CDL . . . YA 31 204.629 157.133 108.118 1 33.55 ? C73 CDL 101 n 1 HETATM 51 C C74 CDL . . . YA 31 203.621 157.465 109.228 1 33.55 ? C74 CDL 101 n 1 HETATM 52 C C75 CDL . . . YA 31 204.147 158.571 110.181 1 33.55 ? C75 CDL 101 n 1 HETATM 53 C C76 CDL . . . YA 31 204.285 158.072 111.642 1 33.55 ? C76 CDL 101 n 1 HETATM 54 C C77 CDL . . . YA 31 204.081 159.218 112.676 1 33.55 ? C77 CDL 101 n 1 HETATM 55 C C78 CDL . . . YA 31 203.005 158.882 113.716 1 33.55 ? C78 CDL 101 n 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 55 #