data_7VYG
#
_model_server_result.job_id            wT9EygtgG2AXBT5Kag4Lqg 
_model_server_result.datetime_utc      '2024-12-21 17:22:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vyg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":201}' 
#
_entry.id    7VYG 
#
_exptl.entry_id    7VYG 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VYG 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 31 FA N N 
? 31 GA N N 
? 31 JA N N 
? 31 TA N N 
? 31 UA N N 
? 31 XA N N 
? 31 YA N N 
? 31 BB N N 
? 31 CB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VYG 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE Q 1 101 718 PEE PEE . 
EA 30 PEE U 1 401 401 PEE PEE . 
FA 31 CDL V 1 201 201 CDL CDL . 
GA 31 CDL V 1 202 203 CDL CDL . 
HA 30 PEE W 1 201 202 PEE PEE . 
IA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
JA 31 CDL a 1 201 201 CDL CDL . 
KA 33 PLX a 1 202 101 PLX PLX . 
LA 33 PLX e 1 201 201 PLX PLX . 
MA 30 PEE f 1 101 101 PEE PEE . 
NA 33 PLX g 1 201 705 PLX PLX . 
OA 30 PEE j 1 201 101 PEE PEE . 
PA 30 PEE j 1 202 201 PEE PEE . 
QA 33 PLX j 1 203 202 PLX PLX . 
RA 33 PLX j 1 204 203 PLX PLX . 
SA 30 PEE l 1 701 207 PEE PEE . 
TA 31 CDL l 1 702 712 CDL CDL . 
UA 31 CDL l 1 703 713 CDL CDL . 
VA 30 PEE l 1 704 719 PEE PEE . 
WA 30 PEE l 1 705 720 PEE PEE . 
XA 31 CDL m 1 201 101 CDL CDL . 
YA 31 CDL n 1 101 102 CDL CDL . 
ZA 30 PEE r 1 501 202 PEE PEE . 
AB 33 PLX r 1 502 205 PLX PLX . 
BB 31 CDL r 1 503 714 CDL CDL . 
CB 31 CDL s 1 401 201 CDL CDL . 
DB 34 UQ s 1 402 402 UQ UQ . 
EB 30 PEE v 1 201 101 PEE PEE . 
FB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . FA 31 164.004 179.529 134.851 1 40.02 ? C1 CDL 201 V 1 
HETATM 2 O O1 CDL . . . FA 31 164.831 180.654 134.861 1 40.02 ? O1 CDL 201 V 1 
HETATM 3 C CA2 CDL . . . FA 31 162.613 179.969 134.328 1 40.02 ? CA2 CDL 201 V 1 
HETATM 4 O OA2 CDL . . . FA 31 162.763 181.222 133.677 1 40.02 ? OA2 CDL 201 V 1 
HETATM 5 P PA1 CDL . . . FA 31 161.506 182.302 133.718 1 40.02 ? PA1 CDL 201 V 1 
HETATM 6 O OA3 CDL . . . FA 31 160.278 181.624 134.272 1 40.02 ? OA3 CDL 201 V 1 
HETATM 7 O OA4 CDL . . . FA 31 161.871 183.472 134.581 1 40.02 ? OA4 CDL 201 V 1 
HETATM 8 O OA5 CDL . . . FA 31 161.195 182.829 132.173 1 40.02 ? OA5 CDL 201 V 1 
HETATM 9 C CA3 CDL . . . FA 31 162.204 183.548 131.482 1 40.02 ? CA3 CDL 201 V 1 
HETATM 10 C CA4 CDL . . . FA 31 162.765 182.665 130.371 1 40.02 ? CA4 CDL 201 V 1 
HETATM 11 O OA6 CDL . . . FA 31 162.503 183.224 129.105 1 40.02 ? OA6 CDL 201 V 1 
HETATM 12 C CA5 CDL . . . FA 31 161.23 182.936 128.533 1 40.02 ? CA5 CDL 201 V 1 
HETATM 13 O OA7 CDL . . . FA 31 160.232 183.329 129.052 1 40.02 ? OA7 CDL 201 V 1 
HETATM 14 C C11 CDL . . . FA 31 161.132 182.104 127.215 1 40.02 ? C11 CDL 201 V 1 
HETATM 15 C C12 CDL . . . FA 31 160.593 182.927 126.041 1 40.02 ? C12 CDL 201 V 1 
HETATM 16 C C13 CDL . . . FA 31 160.909 182.282 124.696 1 40.02 ? C13 CDL 201 V 1 
HETATM 17 C C14 CDL . . . FA 31 161.618 183.257 123.738 1 40.02 ? C14 CDL 201 V 1 
HETATM 18 C C15 CDL . . . FA 31 162.029 182.577 122.401 1 40.02 ? C15 CDL 201 V 1 
HETATM 19 C C16 CDL . . . FA 31 162.325 183.608 121.284 1 40.02 ? C16 CDL 201 V 1 
HETATM 20 C C17 CDL . . . FA 31 161.703 183.197 119.915 1 40.02 ? C17 CDL 201 V 1 
HETATM 21 C C18 CDL . . . FA 31 160.986 184.383 119.222 1 40.02 ? C18 CDL 201 V 1 
HETATM 22 C C19 CDL . . . FA 31 160.459 184.025 117.805 1 40.02 ? C19 CDL 201 V 1 
HETATM 23 C C20 CDL . . . FA 31 161.199 184.803 116.692 1 40.02 ? C20 CDL 201 V 1 
HETATM 24 C C21 CDL . . . FA 31 160.396 184.846 115.366 1 40.02 ? C21 CDL 201 V 1 
HETATM 25 C C22 CDL . . . FA 31 160.857 186.007 114.442 1 40.02 ? C22 CDL 201 V 1 
HETATM 26 C C23 CDL . . . FA 31 160.188 185.959 113.049 1 40.02 ? C23 CDL 201 V 1 
HETATM 27 C C24 CDL . . . FA 31 160.821 184.881 112.132 1 40.02 ? C24 CDL 201 V 1 
HETATM 28 C C25 CDL . . . FA 31 160.557 185.15 110.641 1 40.02 ? C25 CDL 201 V 1 
HETATM 29 C CA6 CDL . . . FA 31 162.177 181.24 130.472 1 40.02 ? CA6 CDL 201 V 1 
HETATM 30 O OA8 CDL . . . FA 31 163.238 180.322 130.657 1 40.02 ? OA8 CDL 201 V 1 
HETATM 31 C CA7 CDL . . . FA 31 162.84 178.951 130.584 1 40.02 ? CA7 CDL 201 V 1 
HETATM 32 O OA9 CDL . . . FA 31 162.175 178.472 131.435 1 40.02 ? OA9 CDL 201 V 1 
HETATM 33 C C31 CDL . . . FA 31 163.278 178.098 129.384 1 40.02 ? C31 CDL 201 V 1 
HETATM 34 C C32 CDL . . . FA 31 163.98 178.942 128.324 1 40.02 ? C32 CDL 201 V 1 
HETATM 35 C C33 CDL . . . FA 31 163.327 178.806 126.943 1 40.02 ? C33 CDL 201 V 1 
HETATM 36 C C34 CDL . . . FA 31 164.353 179.034 125.811 1 40.02 ? C34 CDL 201 V 1 
HETATM 37 C C35 CDL . . . FA 31 165.009 177.707 125.348 1 40.02 ? C35 CDL 201 V 1 
HETATM 38 C C36 CDL . . . FA 31 164.339 177.137 124.076 1 40.02 ? C36 CDL 201 V 1 
HETATM 39 C C37 CDL . . . FA 31 163.852 178.241 123.122 1 40.02 ? C37 CDL 201 V 1 
HETATM 40 C C38 CDL . . . FA 31 164.718 178.339 121.861 1 40.02 ? C38 CDL 201 V 1 
HETATM 41 C C39 CDL . . . FA 31 164.227 179.438 120.9 1 40.02 ? C39 CDL 201 V 1 
HETATM 42 C C40 CDL . . . FA 31 163.568 178.848 119.634 1 40.02 ? C40 CDL 201 V 1 
HETATM 43 C C41 CDL . . . FA 31 164.242 179.362 118.315 1 40.02 ? C41 CDL 201 V 1 
HETATM 44 C C42 CDL . . . FA 31 163.865 178.486 117.089 1 40.02 ? C42 CDL 201 V 1 
HETATM 45 C C43 CDL . . . FA 31 162.578 178.984 116.372 1 40.02 ? C43 CDL 201 V 1 
HETATM 46 C C44 CDL . . . FA 31 162.789 180.364 115.695 1 40.02 ? C44 CDL 201 V 1 
HETATM 47 C C45 CDL . . . FA 31 161.549 180.84 114.941 1 40.02 ? C45 CDL 201 V 1 
HETATM 48 C C46 CDL . . . FA 31 161.902 181.679 113.697 1 40.02 ? C46 CDL 201 V 1 
HETATM 49 C C47 CDL . . . FA 31 163.192 182.477 113.866 1 40.02 ? C47 CDL 201 V 1 
HETATM 50 C CB2 CDL . . . FA 31 164.685 178.436 133.955 1 40.02 ? CB2 CDL 201 V 1 
HETATM 51 O OB2 CDL . . . FA 31 163.848 177.288 133.89 1 40.02 ? OB2 CDL 201 V 1 
HETATM 52 P PB2 CDL . . . FA 31 164.483 175.896 133.198 1 40.02 ? PB2 CDL 201 V 1 
HETATM 53 O OB3 CDL . . . FA 31 165.902 176.174 132.737 1 40.02 ? OB3 CDL 201 V 1 
HETATM 54 O OB4 CDL . . . FA 31 164.504 174.791 134.228 1 40.02 ? OB4 CDL 201 V 1 
HETATM 55 O OB5 CDL . . . FA 31 163.538 175.422 131.894 1 40.02 ? OB5 CDL 201 V 1 
HETATM 56 C CB3 CDL . . . FA 31 162.628 174.342 132.068 1 40.02 ? CB3 CDL 201 V 1 
HETATM 57 C CB4 CDL . . . FA 31 162.846 173.322 130.94 1 40.02 ? CB4 CDL 201 V 1 
HETATM 58 O OB6 CDL . . . FA 31 164.221 173.212 130.665 1 40.02 ? OB6 CDL 201 V 1 
HETATM 59 C CB5 CDL . . . FA 31 164.655 171.872 130.462 1 40.02 ? CB5 CDL 201 V 1 
HETATM 60 O OB7 CDL . . . FA 31 164.354 171.03 131.24 1 40.02 ? OB7 CDL 201 V 1 
HETATM 61 C C51 CDL . . . FA 31 165.508 171.514 129.227 1 40.02 ? C51 CDL 201 V 1 
HETATM 62 C C52 CDL . . . FA 31 165.677 169.995 129.054 1 40.02 ? C52 CDL 201 V 1 
HETATM 63 C C53 CDL . . . FA 31 166.446 169.642 127.773 1 40.02 ? C53 CDL 201 V 1 
HETATM 64 C C54 CDL . . . FA 31 165.733 168.549 126.952 1 40.02 ? C54 CDL 201 V 1 
HETATM 65 C C55 CDL . . . FA 31 165.532 168.967 125.489 1 40.02 ? C55 CDL 201 V 1 
HETATM 66 C C56 CDL . . . FA 31 164.109 168.635 124.971 1 40.02 ? C56 CDL 201 V 1 
HETATM 67 C C57 CDL . . . FA 31 163.577 169.724 124.019 1 40.02 ? C57 CDL 201 V 1 
HETATM 68 C C58 CDL . . . FA 31 163.278 169.159 122.611 1 40.02 ? C58 CDL 201 V 1 
HETATM 69 C C59 CDL . . . FA 31 164.27 169.685 121.546 1 40.02 ? C59 CDL 201 V 1 
HETATM 70 C C60 CDL . . . FA 31 163.89 171.084 121.03 1 40.02 ? C60 CDL 201 V 1 
HETATM 71 C C61 CDL . . . FA 31 162.589 171.075 120.183 1 40.02 ? C61 CDL 201 V 1 
HETATM 72 C C62 CDL . . . FA 31 162.53 169.896 119.19 1 40.02 ? C62 CDL 201 V 1 
HETATM 73 C C63 CDL . . . FA 31 161.601 170.195 118.005 1 40.02 ? C63 CDL 201 V 1 
HETATM 74 C C64 CDL . . . FA 31 161.182 168.93 117.24 1 40.02 ? C64 CDL 201 V 1 
HETATM 75 C C65 CDL . . . FA 31 162.111 167.75 117.491 1 40.02 ? C65 CDL 201 V 1 
HETATM 76 C C66 CDL . . . FA 31 161.682 166.515 116.711 1 40.02 ? C66 CDL 201 V 1 
HETATM 77 C C67 CDL . . . FA 31 162.865 165.851 116.014 1 40.02 ? C67 CDL 201 V 1 
HETATM 78 C CB6 CDL . . . FA 31 162.113 173.773 129.68 1 40.02 ? CB6 CDL 201 V 1 
HETATM 79 O OB8 CDL . . . FA 31 162.911 173.444 128.546 1 40.02 ? OB8 CDL 201 V 1 
HETATM 80 C CB7 CDL . . . FA 31 162.476 174.038 127.337 1 40.02 ? CB7 CDL 201 V 1 
HETATM 81 O OB9 CDL . . . FA 31 162.204 175.191 127.312 1 40.02 ? OB9 CDL 201 V 1 
HETATM 82 C C71 CDL . . . FA 31 162.364 173.191 126.048 1 40.02 ? C71 CDL 201 V 1 
HETATM 83 C C72 CDL . . . FA 31 161.858 174.021 124.86 1 40.02 ? C72 CDL 201 V 1 
HETATM 84 C C73 CDL . . . FA 31 162.767 173.922 123.625 1 40.02 ? C73 CDL 201 V 1 
HETATM 85 C C74 CDL . . . FA 31 161.969 174.021 122.316 1 40.02 ? C74 CDL 201 V 1 
HETATM 86 C C75 CDL . . . FA 31 162.822 174.57 121.14 1 40.02 ? C75 CDL 201 V 1 
HETATM 87 C C76 CDL . . . FA 31 162.054 175.615 120.29 1 40.02 ? C76 CDL 201 V 1 
HETATM 88 C C77 CDL . . . FA 31 162.051 175.27 118.771 1 40.02 ? C77 CDL 201 V 1 
HETATM 89 C C78 CDL . . . FA 31 160.641 175.303 118.167 1 40.02 ? C78 CDL 201 V 1 
HETATM 90 C C79 CDL . . . FA 31 160.657 175.189 116.627 1 40.02 ? C79 CDL 201 V 1 
HETATM 91 C C80 CDL . . . FA 31 159.269 175.497 116.008 1 40.02 ? C80 CDL 201 V 1 
HETATM 92 C C81 CDL . . . FA 31 159.337 176.515 114.87 1 40.02 ? C81 CDL 201 V 1 
HETATM 93 C C82 CDL . . . FA 31 157.935 177.096 114.521 1 40.02 ? C82 CDL 201 V 1 
HETATM 94 C C83 CDL . . . FA 31 157.944 177.904 113.21 1 40.02 ? C83 CDL 201 V 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    117 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           94 
#