data_7VYG # _model_server_result.job_id ea6HhyKdWsgyr2goVxB-2A _model_server_result.datetime_utc '2024-12-30 17:59:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":201}' # _entry.id 7VYG # _exptl.entry_id 7VYG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 767.132 _entity.id 33 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 33 KA N N ? 33 LA N N ? 33 NA N N ? 33 QA N N ? 33 RA N N ? 33 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C42 H89 N O8 P 1' _chem_comp.formula_weight 767.132 _chem_comp.id PLX _chem_comp.mon_nstd_flag . _chem_comp.name (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VYG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 30 PEE U 1 401 401 PEE PEE . FA 31 CDL V 1 201 201 CDL CDL . GA 31 CDL V 1 202 203 CDL CDL . HA 30 PEE W 1 201 202 PEE PEE . IA 32 8Q1 X 1 201 201 8Q1 8Q1 . JA 31 CDL a 1 201 201 CDL CDL . KA 33 PLX a 1 202 101 PLX PLX . LA 33 PLX e 1 201 201 PLX PLX . MA 30 PEE f 1 101 101 PEE PEE . NA 33 PLX g 1 201 705 PLX PLX . OA 30 PEE j 1 201 101 PEE PEE . PA 30 PEE j 1 202 201 PEE PEE . QA 33 PLX j 1 203 202 PLX PLX . RA 33 PLX j 1 204 203 PLX PLX . SA 30 PEE l 1 701 207 PEE PEE . TA 31 CDL l 1 702 712 CDL CDL . UA 31 CDL l 1 703 713 CDL CDL . VA 30 PEE l 1 704 719 PEE PEE . WA 30 PEE l 1 705 720 PEE PEE . XA 31 CDL m 1 201 101 CDL CDL . YA 31 CDL n 1 101 102 CDL CDL . ZA 30 PEE r 1 501 202 PEE PEE . AB 33 PLX r 1 502 205 PLX PLX . BB 31 CDL r 1 503 714 CDL CDL . CB 31 CDL s 1 401 201 CDL CDL . DB 34 UQ s 1 402 402 UQ UQ . EB 30 PEE v 1 201 101 PEE PEE . FB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C23 PLX . . . LA 33 234.492 189.748 124.731 1 29.57 ? C23 PLX 201 e 1 HETATM 2 C C22 PLX . . . LA 33 235.396 190.798 124.016 1 29.57 ? C22 PLX 201 e 1 HETATM 3 C C21 PLX . . . LA 33 234.611 191.613 122.938 1 29.57 ? C21 PLX 201 e 1 HETATM 4 C C20 PLX . . . LA 33 235.558 192.49 122.055 1 29.57 ? C20 PLX 201 e 1 HETATM 5 C C19 PLX . . . LA 33 236.683 191.646 121.366 1 29.57 ? C19 PLX 201 e 1 HETATM 6 C C18 PLX . . . LA 33 236.267 191.142 119.933 1 29.57 ? C18 PLX 201 e 1 HETATM 7 C C17 PLX . . . LA 33 237.512 190.713 119.059 1 29.57 ? C17 PLX 201 e 1 HETATM 8 C C16 PLX . . . LA 33 237.314 191.042 117.539 1 29.57 ? C16 PLX 201 e 1 HETATM 9 C C15 PLX . . . LA 33 236.126 190.222 116.907 1 29.57 ? C15 PLX 201 e 1 HETATM 10 C C14 PLX . . . LA 33 234.991 191.142 116.34 1 29.57 ? C14 PLX 201 e 1 HETATM 11 C C13 PLX . . . LA 33 234.852 191.033 114.775 1 29.57 ? C13 PLX 201 e 1 HETATM 12 C C12 PLX . . . LA 33 234.251 192.332 114.141 1 29.57 ? C12 PLX 201 e 1 HETATM 13 C C11 PLX . . . LA 33 233.083 192.023 113.143 1 29.57 ? C11 PLX 201 e 1 HETATM 14 C C10 PLX . . . LA 33 233.437 192.416 111.673 1 29.57 ? C10 PLX 201 e 1 HETATM 15 C C9 PLX . . . LA 33 233 191.322 110.631 1 29.57 ? C9 PLX 201 e 1 HETATM 16 C C8 PLX . . . LA 33 234.162 190.319 110.274 1 29.57 ? C8 PLX 201 e 1 HETATM 17 C C7 PLX . . . LA 33 233.609 188.957 109.696 1 29.57 ? C7 PLX 201 e 1 HETATM 18 C C6 PLX . . . LA 33 232.595 189.181 108.54 1 29.57 ? C6 PLX 201 e 1 HETATM 19 O O7 PLX . . . LA 33 233.268 189.609 107.416 1 29.57 ? O7 PLX 201 e 1 HETATM 20 O O6 PLX . . . LA 33 231.914 187.969 108.255 1 29.57 ? O6 PLX 201 e 1 HETATM 21 C C4 PLX . . . LA 33 230.516 188.1 108.168 1 29.57 ? C4 PLX 201 e 1 HETATM 22 C C3 PLX . . . LA 33 230.161 188.987 106.965 1 29.57 ? C3 PLX 201 e 1 HETATM 23 O O4 PLX . . . LA 33 229.727 188.14 105.898 1 29.57 ? O4 PLX 201 e 1 HETATM 24 P P1 PLX . . . LA 33 230.136 188.566 104.332 1 29.57 ? P1 PLX 201 e 1 HETATM 25 O O1 PLX . . . LA 33 231.65 187.961 103.976 1 29.57 ? O1 PLX 201 e 1 HETATM 26 C C2 PLX . . . LA 33 232.205 188.262 102.694 1 29.57 ? C2 PLX 201 e 1 HETATM 27 C C1 PLX . . . LA 33 233.198 187.124 102.268 1 29.57 ? C1 PLX 201 e 1 HETATM 28 N N1 PLX . . . LA 33 232.526 185.784 102.143 1 29.57 ? N1 PLX 201 e 1 HETATM 29 C C1C PLX . . . LA 33 231.178 185.984 101.571 1 29.57 ? C1C PLX 201 e 1 HETATM 30 C C1B PLX . . . LA 33 233.352 184.979 101.198 1 29.57 ? C1B PLX 201 e 1 HETATM 31 C C1A PLX . . . LA 33 232.367 184.954 103.361 1 29.57 ? C1A PLX 201 e 1 HETATM 32 O O2 PLX . . . LA 33 230.155 190.07 104.188 1 29.57 ? O2 PLX 201 e 1 HETATM 33 C C5 PLX . . . LA 33 229.879 186.71 107.978 1 29.57 ? C5 PLX 201 e 1 HETATM 34 O O8 PLX . . . LA 33 229.139 186.372 109.152 1 29.57 ? O8 PLX 201 e 1 HETATM 35 C C24 PLX . . . LA 33 228.184 185.359 108.933 1 29.57 ? C24 PLX 201 e 1 HETATM 36 O O9 PLX . . . LA 33 227.518 185.624 107.746 1 29.57 ? O9 PLX 201 e 1 HETATM 37 C C25 PLX . . . LA 33 227.17 185.327 110.096 1 29.57 ? C25 PLX 201 e 1 HETATM 38 C C26 PLX . . . LA 33 226.647 183.885 110.39 1 29.57 ? C26 PLX 201 e 1 HETATM 39 C C27 PLX . . . LA 33 225.135 183.869 110.78 1 29.57 ? C27 PLX 201 e 1 HETATM 40 C C28 PLX . . . LA 33 224.87 183.171 112.156 1 29.57 ? C28 PLX 201 e 1 HETATM 41 C C29 PLX . . . LA 33 225.414 181.706 112.191 1 29.57 ? C29 PLX 201 e 1 HETATM 42 C C30 PLX . . . LA 33 224.377 180.677 112.784 1 29.57 ? C30 PLX 201 e 1 HETATM 43 C C31 PLX . . . LA 33 224.929 179.94 114.063 1 29.57 ? C31 PLX 201 e 1 HETATM 44 C C32 PLX . . . LA 33 223.866 178.965 114.707 1 29.57 ? C32 PLX 201 e 1 HETATM 45 C C33 PLX . . . LA 33 223.012 179.663 115.841 1 29.57 ? C33 PLX 201 e 1 HETATM 46 C C34 PLX . . . LA 33 221.492 179.23 115.808 1 29.57 ? C34 PLX 201 e 1 HETATM 47 C C35 PLX . . . LA 33 220.51 180.458 116.014 1 29.57 ? C35 PLX 201 e 1 HETATM 48 C C36 PLX . . . LA 33 219.189 180.306 115.183 1 29.57 ? C36 PLX 201 e 1 HETATM 49 C C37 PLX . . . LA 33 218.472 181.679 114.931 1 29.57 ? C37 PLX 201 e 1 HETATM 50 C C38 PLX . . . LA 33 217.852 181.768 113.499 1 29.57 ? C38 PLX 201 e 1 HETATM 51 C C39 PLX . . . LA 33 218.902 181.541 112.382 1 29.57 ? C39 PLX 201 e 1 HETATM 52 O O3 PLX . . . LA 33 229.122 187.985 103.368 1 29.57 ? O3 PLX 201 e 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 52 #