data_7VYG
#
_model_server_result.job_id            muHJ-mEsR86wXTtdzWN3mw 
_model_server_result.datetime_utc      '2024-12-21 16:46:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vyg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"OA","auth_seq_id":201}' 
#
_entry.id    7VYG 
#
_exptl.entry_id    7VYG 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          30 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VYG 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 30 DA N N 
? 30 EA N N 
? 30 HA N N 
? 30 MA N N 
? 30 OA N N 
? 30 PA N N 
? 30 SA N N 
? 30 VA N N 
? 30 WA N N 
? 30 ZA N N 
? 30 EB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
_atom_sites.entry_id                     7VYG 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE Q 1 101 718 PEE PEE . 
EA 30 PEE U 1 401 401 PEE PEE . 
FA 31 CDL V 1 201 201 CDL CDL . 
GA 31 CDL V 1 202 203 CDL CDL . 
HA 30 PEE W 1 201 202 PEE PEE . 
IA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
JA 31 CDL a 1 201 201 CDL CDL . 
KA 33 PLX a 1 202 101 PLX PLX . 
LA 33 PLX e 1 201 201 PLX PLX . 
MA 30 PEE f 1 101 101 PEE PEE . 
NA 33 PLX g 1 201 705 PLX PLX . 
OA 30 PEE j 1 201 101 PEE PEE . 
PA 30 PEE j 1 202 201 PEE PEE . 
QA 33 PLX j 1 203 202 PLX PLX . 
RA 33 PLX j 1 204 203 PLX PLX . 
SA 30 PEE l 1 701 207 PEE PEE . 
TA 31 CDL l 1 702 712 CDL CDL . 
UA 31 CDL l 1 703 713 CDL CDL . 
VA 30 PEE l 1 704 719 PEE PEE . 
WA 30 PEE l 1 705 720 PEE PEE . 
XA 31 CDL m 1 201 101 CDL CDL . 
YA 31 CDL n 1 101 102 CDL CDL . 
ZA 30 PEE r 1 501 202 PEE PEE . 
AB 33 PLX r 1 502 205 PLX PLX . 
BB 31 CDL r 1 503 714 CDL CDL . 
CB 31 CDL s 1 401 201 CDL CDL . 
DB 34 UQ s 1 402 402 UQ UQ . 
EB 30 PEE v 1 201 101 PEE PEE . 
FB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 PEE . . . OA 30 164.723 114.716 124.236 1 31.66 ? C27 PEE 201 j 1 
HETATM 2 C C26 PEE . . . OA 30 163.623 113.67 124.419 1 31.66 ? C26 PEE 201 j 1 
HETATM 3 C C25 PEE . . . OA 30 162.23 114.284 124.364 1 31.66 ? C25 PEE 201 j 1 
HETATM 4 C C24 PEE . . . OA 30 161.13 113.226 124.317 1 31.66 ? C24 PEE 201 j 1 
HETATM 5 C C23 PEE . . . OA 30 160.668 112.815 125.712 1 31.66 ? C23 PEE 201 j 1 
HETATM 6 C C22 PEE . . . OA 30 160.082 113.986 126.497 1 31.66 ? C22 PEE 201 j 1 
HETATM 7 C C21 PEE . . . OA 30 158.554 113.935 126.572 1 31.66 ? C21 PEE 201 j 1 
HETATM 8 C C20 PEE . . . OA 30 157.996 114.806 127.698 1 31.66 ? C20 PEE 201 j 1 
HETATM 9 C C19 PEE . . . OA 30 158.66 114.502 129.04 1 31.66 ? C19 PEE 201 j 1 
HETATM 10 C C18 PEE . . . OA 30 159.373 115.717 129.633 1 31.66 ? C18 PEE 201 j 1 
HETATM 11 C C17 PEE . . . OA 30 158.428 116.631 130.41 1 31.66 ? C17 PEE 201 j 1 
HETATM 12 C C16 PEE . . . OA 30 159.167 117.423 131.488 1 31.66 ? C16 PEE 201 j 1 
HETATM 13 C C15 PEE . . . OA 30 160.055 116.528 132.352 1 31.66 ? C15 PEE 201 j 1 
HETATM 14 C C14 PEE . . . OA 30 160.647 117.274 133.549 1 31.66 ? C14 PEE 201 j 1 
HETATM 15 C C13 PEE . . . OA 30 161.648 116.422 134.334 1 31.66 ? C13 PEE 201 j 1 
HETATM 16 C C12 PEE . . . OA 30 161.999 117.037 135.695 1 31.66 ? C12 PEE 201 j 1 
HETATM 17 C C11 PEE . . . OA 30 162.204 115.955 136.761 1 31.66 ? C11 PEE 201 j 1 
HETATM 18 C C10 PEE . . . OA 30 162.425 116.531 138.165 1 31.66 ? C10 PEE 201 j 1 
HETATM 19 O O4 PEE . . . OA 30 163.202 117.407 138.331 1 31.66 ? O4 PEE 201 j 1 
HETATM 20 O O2 PEE . . . OA 30 161.707 116.013 139.252 1 31.66 ? O2 PEE 201 j 1 
HETATM 21 C C2 PEE . . . OA 30 162.506 115.425 140.24 1 31.66 ? C2 PEE 201 j 1 
HETATM 22 C C1 PEE . . . OA 30 162.243 116.097 141.588 1 31.66 ? C1 PEE 201 j 1 
HETATM 23 O O3P PEE . . . OA 30 160.96 115.744 142.034 1 31.66 ? O3P PEE 201 j 1 
HETATM 24 P P PEE . . . OA 30 160.033 116.898 142.773 1 31.66 ? P PEE 201 j 1 
HETATM 25 O O2P PEE . . . OA 30 158.612 116.795 142.273 1 31.66 ? O2P PEE 201 j 1 
HETATM 26 O O1P PEE . . . OA 30 160.579 118.269 142.462 1 31.66 ? O1P PEE 201 j 1 
HETATM 27 O O4P PEE . . . OA 30 160.054 116.673 144.408 1 31.66 ? O4P PEE 201 j 1 
HETATM 28 C C4 PEE . . . OA 30 160.075 115.361 144.908 1 31.66 ? C4 PEE 201 j 1 
HETATM 29 C C5 PEE . . . OA 30 160.49 115.423 146.378 1 31.66 ? C5 PEE 201 j 1 
HETATM 30 N N PEE . . . OA 30 159.438 116.04 147.165 1 31.66 ? N PEE 201 j 1 
HETATM 31 C C3 PEE . . . OA 30 162.174 113.942 140.342 1 31.66 ? C3 PEE 201 j 1 
HETATM 32 O O3 PEE . . . OA 30 162.3 113.371 139.071 1 31.66 ? O3 PEE 201 j 1 
HETATM 33 C C30 PEE . . . OA 30 163.219 112.315 139.016 1 31.66 ? C30 PEE 201 j 1 
HETATM 34 O O5 PEE . . . OA 30 163.09 111.384 139.736 1 31.66 ? O5 PEE 201 j 1 
HETATM 35 C C31 PEE . . . OA 30 164.387 112.363 138.029 1 31.66 ? C31 PEE 201 j 1 
HETATM 36 C C32 PEE . . . OA 30 164.006 111.85 136.638 1 31.66 ? C32 PEE 201 j 1 
HETATM 37 C C33 PEE . . . OA 30 163.246 110.522 136.692 1 31.66 ? C33 PEE 201 j 1 
HETATM 38 C C34 PEE . . . OA 30 163.356 109.734 135.386 1 31.66 ? C34 PEE 201 j 1 
HETATM 39 C C35 PEE . . . OA 30 163.149 110.624 134.158 1 31.66 ? C35 PEE 201 j 1 
HETATM 40 C C36 PEE . . . OA 30 163.278 109.836 132.853 1 31.66 ? C36 PEE 201 j 1 
HETATM 41 C C37 PEE . . . OA 30 164.551 108.992 132.804 1 31.66 ? C37 PEE 201 j 1 
HETATM 42 C C38 PEE . . . OA 30 164.566 108.049 131.602 1 31.66 ? C38 PEE 201 j 1 
HETATM 43 C C39 PEE . . . OA 30 163.276 107.249 131.483 1 31.66 ? C39 PEE 201 j 1 
HETATM 44 C C40 PEE . . . OA 30 162.984 106.832 130.047 1 31.66 ? C40 PEE 201 j 1 
HETATM 45 C C41 PEE . . . OA 30 164.158 106.107 129.401 1 31.66 ? C41 PEE 201 j 1 
HETATM 46 C C42 PEE . . . OA 30 163.866 105.712 127.958 1 31.66 ? C42 PEE 201 j 1 
HETATM 47 C C43 PEE . . . OA 30 162.548 104.955 127.83 1 31.66 ? C43 PEE 201 j 1 
HETATM 48 C C44 PEE . . . OA 30 162.648 103.521 128.335 1 31.66 ? C44 PEE 201 j 1 
HETATM 49 C C45 PEE . . . OA 30 161.341 103.04 128.961 1 31.66 ? C45 PEE 201 j 1 
HETATM 50 C C46 PEE . . . OA 30 161.264 101.517 129.056 1 31.66 ? C46 PEE 201 j 1 
HETATM 51 C C47 PEE . . . OA 30 160.6 100.89 127.83 1 31.66 ? C47 PEE 201 j 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    59 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           51 
#