data_7VYG
#
_model_server_result.job_id            qRnVDax28y7HD_akkmN7Aw 
_model_server_result.datetime_utc      '2024-12-21 17:00:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7vyg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"XA","auth_seq_id":201}' 
#
_entry.id    7VYG 
#
_exptl.entry_id    7VYG 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7VYG 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7VYG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 31 FA N N 
? 31 GA N N 
? 31 JA N N 
? 31 TA N N 
? 31 UA N N 
? 31 XA N N 
? 31 YA N N 
? 31 BB N N 
? 31 CB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7VYG 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PEE Q 1 101 718 PEE PEE . 
EA 30 PEE U 1 401 401 PEE PEE . 
FA 31 CDL V 1 201 201 CDL CDL . 
GA 31 CDL V 1 202 203 CDL CDL . 
HA 30 PEE W 1 201 202 PEE PEE . 
IA 32 8Q1 X 1 201 201 8Q1 8Q1 . 
JA 31 CDL a 1 201 201 CDL CDL . 
KA 33 PLX a 1 202 101 PLX PLX . 
LA 33 PLX e 1 201 201 PLX PLX . 
MA 30 PEE f 1 101 101 PEE PEE . 
NA 33 PLX g 1 201 705 PLX PLX . 
OA 30 PEE j 1 201 101 PEE PEE . 
PA 30 PEE j 1 202 201 PEE PEE . 
QA 33 PLX j 1 203 202 PLX PLX . 
RA 33 PLX j 1 204 203 PLX PLX . 
SA 30 PEE l 1 701 207 PEE PEE . 
TA 31 CDL l 1 702 712 CDL CDL . 
UA 31 CDL l 1 703 713 CDL CDL . 
VA 30 PEE l 1 704 719 PEE PEE . 
WA 30 PEE l 1 705 720 PEE PEE . 
XA 31 CDL m 1 201 101 CDL CDL . 
YA 31 CDL n 1 101 102 CDL CDL . 
ZA 30 PEE r 1 501 202 PEE PEE . 
AB 33 PLX r 1 502 205 PLX PLX . 
BB 31 CDL r 1 503 714 CDL CDL . 
CB 31 CDL s 1 401 201 CDL CDL . 
DB 34 UQ s 1 402 402 UQ UQ . 
EB 30 PEE v 1 201 101 PEE PEE . 
FB 35 ADP w 1 401 401 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . XA 31 147.065 166.197 137.526 1 37.54 ? C1 CDL 201 m 1 
HETATM 2 O O1 CDL . . . XA 31 146.222 166.288 136.374 1 37.54 ? O1 CDL 201 m 1 
HETATM 3 C CA2 CDL . . . XA 31 148.46 166.71 137.186 1 37.54 ? CA2 CDL 201 m 1 
HETATM 4 O OA2 CDL . . . XA 31 149.015 167.38 138.318 1 37.54 ? OA2 CDL 201 m 1 
HETATM 5 P PA1 CDL . . . XA 31 148.408 168.786 138.812 1 37.54 ? PA1 CDL 201 m 1 
HETATM 6 O OA3 CDL . . . XA 31 146.901 168.692 138.798 1 37.54 ? OA3 CDL 201 m 1 
HETATM 7 O OA4 CDL . . . XA 31 149.124 169.178 140.08 1 37.54 ? OA4 CDL 201 m 1 
HETATM 8 O OA5 CDL . . . XA 31 148.849 169.798 137.639 1 37.54 ? OA5 CDL 201 m 1 
HETATM 9 C CA3 CDL . . . XA 31 147.865 170.514 136.895 1 37.54 ? CA3 CDL 201 m 1 
HETATM 10 C CA4 CDL . . . XA 31 147.389 169.682 135.704 1 37.54 ? CA4 CDL 201 m 1 
HETATM 11 O OA6 CDL . . . XA 31 148.401 168.775 135.249 1 37.54 ? OA6 CDL 201 m 1 
HETATM 12 C CA5 CDL . . . XA 31 149.72 169.359 135.045 1 37.54 ? CA5 CDL 201 m 1 
HETATM 13 O OA7 CDL . . . XA 31 149.881 170.566 135.1 1 37.54 ? OA7 CDL 201 m 1 
HETATM 14 C C11 CDL . . . XA 31 150.892 168.451 134.761 1 37.54 ? C11 CDL 201 m 1 
HETATM 15 C C12 CDL . . . XA 31 151.387 168.675 133.337 1 37.54 ? C12 CDL 201 m 1 
HETATM 16 C C13 CDL . . . XA 31 150.484 167.984 132.325 1 37.54 ? C13 CDL 201 m 1 
HETATM 17 C C14 CDL . . . XA 31 149.076 168.561 132.379 1 37.54 ? C14 CDL 201 m 1 
HETATM 18 C C15 CDL . . . XA 31 148.476 168.664 130.983 1 37.54 ? C15 CDL 201 m 1 
HETATM 19 C C16 CDL . . . XA 31 149.262 167.817 129.99 1 37.54 ? C16 CDL 201 m 1 
HETATM 20 C C17 CDL . . . XA 31 149.263 168.465 128.612 1 37.54 ? C17 CDL 201 m 1 
HETATM 21 C C18 CDL . . . XA 31 150.682 168.599 128.072 1 37.54 ? C18 CDL 201 m 1 
HETATM 22 C C19 CDL . . . XA 31 150.671 169.001 126.604 1 37.54 ? C19 CDL 201 m 1 
HETATM 23 C C20 CDL . . . XA 31 149.954 170.331 126.415 1 37.54 ? C20 CDL 201 m 1 
HETATM 24 C C21 CDL . . . XA 31 150.878 171.494 126.752 1 37.54 ? C21 CDL 201 m 1 
HETATM 25 C C22 CDL . . . XA 31 150.12 172.814 126.777 1 37.54 ? C22 CDL 201 m 1 
HETATM 26 C C23 CDL . . . XA 31 151.014 173.965 126.342 1 37.54 ? C23 CDL 201 m 1 
HETATM 27 C C24 CDL . . . XA 31 150.523 174.55 125.026 1 37.54 ? C24 CDL 201 m 1 
HETATM 28 C C25 CDL . . . XA 31 150.255 173.445 124.016 1 37.54 ? C25 CDL 201 m 1 
HETATM 29 C C26 CDL . . . XA 31 150.084 174.013 122.613 1 37.54 ? C26 CDL 201 m 1 
HETATM 30 C C27 CDL . . . XA 31 148.652 173.867 122.146 1 37.54 ? C27 CDL 201 m 1 
HETATM 31 C CA6 CDL . . . XA 31 146.915 170.599 134.573 1 37.54 ? CA6 CDL 201 m 1 
HETATM 32 O OA8 CDL . . . XA 31 147.88 170.701 133.524 1 37.54 ? OA8 CDL 201 m 1 
HETATM 33 C CA7 CDL . . . XA 31 148.312 172.009 133.06 1 37.54 ? CA7 CDL 201 m 1 
HETATM 34 O OA9 CDL . . . XA 31 149.332 172.492 133.516 1 37.54 ? OA9 CDL 201 m 1 
HETATM 35 C C31 CDL . . . XA 31 147.503 172.756 132.03 1 37.54 ? C31 CDL 201 m 1 
HETATM 36 C C32 CDL . . . XA 31 148.416 173.659 131.211 1 37.54 ? C32 CDL 201 m 1 
HETATM 37 C C33 CDL . . . XA 31 148.209 173.418 129.721 1 37.54 ? C33 CDL 201 m 1 
HETATM 38 C C34 CDL . . . XA 31 148.394 174.701 128.921 1 37.54 ? C34 CDL 201 m 1 
HETATM 39 C C35 CDL . . . XA 31 147.092 175.115 128.247 1 37.54 ? C35 CDL 201 m 1 
HETATM 40 C C36 CDL . . . XA 31 147.229 175.099 126.73 1 37.54 ? C36 CDL 201 m 1 
HETATM 41 C C37 CDL . . . XA 31 147.072 176.503 126.162 1 37.54 ? C37 CDL 201 m 1 
HETATM 42 C C38 CDL . . . XA 31 146.368 176.476 124.811 1 37.54 ? C38 CDL 201 m 1 
HETATM 43 C C39 CDL . . . XA 31 147.15 175.639 123.808 1 37.54 ? C39 CDL 201 m 1 
HETATM 44 C C40 CDL . . . XA 31 146.78 176.011 122.378 1 37.54 ? C40 CDL 201 m 1 
HETATM 45 C C41 CDL . . . XA 31 146.084 177.365 122.321 1 37.54 ? C41 CDL 201 m 1 
HETATM 46 C C42 CDL . . . XA 31 146.073 177.911 120.898 1 37.54 ? C42 CDL 201 m 1 
HETATM 47 C C43 CDL . . . XA 31 145.262 179.198 120.809 1 37.54 ? C43 CDL 201 m 1 
HETATM 48 C C44 CDL . . . XA 31 145.845 180.137 119.76 1 37.54 ? C44 CDL 201 m 1 
HETATM 49 C C45 CDL . . . XA 31 145.707 181.593 120.191 1 37.54 ? C45 CDL 201 m 1 
HETATM 50 C C46 CDL . . . XA 31 144.24 181.994 120.302 1 37.54 ? C46 CDL 201 m 1 
HETATM 51 C C47 CDL . . . XA 31 143.918 183.151 119.382 1 37.54 ? C47 CDL 201 m 1 
HETATM 52 C CB2 CDL . . . XA 31 147.154 164.742 137.957 1 37.54 ? CB2 CDL 201 m 1 
HETATM 53 O OB2 CDL . . . XA 31 147.369 163.924 136.813 1 37.54 ? OB2 CDL 201 m 1 
HETATM 54 P PB2 CDL . . . XA 31 147.19 162.334 136.924 1 37.54 ? PB2 CDL 201 m 1 
HETATM 55 O OB3 CDL . . . XA 31 148.409 161.748 137.585 1 37.54 ? OB3 CDL 201 m 1 
HETATM 56 O OB4 CDL . . . XA 31 145.823 162.073 137.503 1 37.54 ? OB4 CDL 201 m 1 
HETATM 57 O OB5 CDL . . . XA 31 147.191 161.882 135.386 1 37.54 ? OB5 CDL 201 m 1 
HETATM 58 C CB3 CDL . . . XA 31 148.307 162.162 134.551 1 37.54 ? CB3 CDL 201 m 1 
HETATM 59 C CB4 CDL . . . XA 31 147.806 162.289 133.122 1 37.54 ? CB4 CDL 201 m 1 
HETATM 60 O OB6 CDL . . . XA 31 146.773 163.265 133.093 1 37.54 ? OB6 CDL 201 m 1 
HETATM 61 C CB5 CDL . . . XA 31 147.284 164.584 132.777 1 37.54 ? CB5 CDL 201 m 1 
HETATM 62 O OB7 CDL . . . XA 31 148.436 164.852 133.063 1 37.54 ? OB7 CDL 201 m 1 
HETATM 63 C C51 CDL . . . XA 31 146.398 165.601 132.106 1 37.54 ? C51 CDL 201 m 1 
HETATM 64 C C52 CDL . . . XA 31 144.94 165.244 132.362 1 37.54 ? C52 CDL 201 m 1 
HETATM 65 C C53 CDL . . . XA 31 144.361 164.437 131.206 1 37.54 ? C53 CDL 201 m 1 
HETATM 66 C C54 CDL . . . XA 31 143.029 165.02 130.756 1 37.54 ? C54 CDL 201 m 1 
HETATM 67 C C55 CDL . . . XA 31 143.034 165.259 129.253 1 37.54 ? C55 CDL 201 m 1 
HETATM 68 C C56 CDL . . . XA 31 143.973 164.283 128.556 1 37.54 ? C56 CDL 201 m 1 
HETATM 69 C C57 CDL . . . XA 31 143.797 164.347 127.046 1 37.54 ? C57 CDL 201 m 1 
HETATM 70 C C58 CDL . . . XA 31 144.909 165.168 126.408 1 37.54 ? C58 CDL 201 m 1 
HETATM 71 C C59 CDL . . . XA 31 145.02 164.87 124.919 1 37.54 ? C59 CDL 201 m 1 
HETATM 72 C C60 CDL . . . XA 31 146.094 163.823 124.648 1 37.54 ? C60 CDL 201 m 1 
HETATM 73 C C61 CDL . . . XA 31 146.997 164.255 123.498 1 37.54 ? C61 CDL 201 m 1 
HETATM 74 C C62 CDL . . . XA 31 146.936 163.251 122.354 1 37.54 ? C62 CDL 201 m 1 
HETATM 75 C CB6 CDL . . . XA 31 147.236 160.955 132.667 1 37.54 ? CB6 CDL 201 m 1 
HETATM 76 O OB8 CDL . . . XA 31 147.194 160.911 131.244 1 37.54 ? OB8 CDL 201 m 1 
HETATM 77 C CB7 CDL . . . XA 31 146.012 160.401 130.575 1 37.54 ? CB7 CDL 201 m 1 
HETATM 78 O OB9 CDL . . . XA 31 144.922 160.797 130.94 1 37.54 ? OB9 CDL 201 m 1 
HETATM 79 C C71 CDL . . . XA 31 146.13 159.398 129.454 1 37.54 ? C71 CDL 201 m 1 
HETATM 80 C C72 CDL . . . XA 31 145.937 160.086 128.107 1 37.54 ? C72 CDL 201 m 1 
HETATM 81 C C73 CDL . . . XA 31 144.499 159.968 127.621 1 37.54 ? C73 CDL 201 m 1 
HETATM 82 C C74 CDL . . . XA 31 144.377 158.922 126.52 1 37.54 ? C74 CDL 201 m 1 
HETATM 83 C C75 CDL . . . XA 31 143.124 159.127 125.677 1 37.54 ? C75 CDL 201 m 1 
HETATM 84 C C76 CDL . . . XA 31 143.255 160.36 124.79 1 37.54 ? C76 CDL 201 m 1 
HETATM 85 C C77 CDL . . . XA 31 143.016 160.024 123.323 1 37.54 ? C77 CDL 201 m 1 
HETATM 86 C C78 CDL . . . XA 31 143.827 160.937 122.409 1 37.54 ? C78 CDL 201 m 1 
HETATM 87 C C79 CDL . . . XA 31 144.847 160.148 121.593 1 37.54 ? C79 CDL 201 m 1 
HETATM 88 C C80 CDL . . . XA 31 145.281 160.914 120.347 1 37.54 ? C80 CDL 201 m 1 
HETATM 89 C C81 CDL . . . XA 31 146.785 161.173 120.349 1 37.54 ? C81 CDL 201 m 1 
HETATM 90 C C82 CDL . . . XA 31 147.464 160.522 119.148 1 37.54 ? C82 CDL 201 m 1 
HETATM 91 C C83 CDL . . . XA 31 148.945 160.881 119.084 1 37.54 ? C83 CDL 201 m 1 
HETATM 92 C C84 CDL . . . XA 31 149.8 159.678 118.702 1 37.54 ? C84 CDL 201 m 1 
HETATM 93 C C85 CDL . . . XA 31 150.187 159.719 117.227 1 37.54 ? C85 CDL 201 m 1 
HETATM 94 C C86 CDL . . . XA 31 150.522 158.326 116.698 1 37.54 ? C86 CDL 201 m 1 
HETATM 95 C C87 CDL . . . XA 31 150.384 158.248 115.192 1 37.54 ? C87 CDL 201 m 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    72 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           95 
#