data_7VYG # _model_server_result.job_id cWhCuJUXhGsl023gTXjrqA _model_server_result.datetime_utc '2024-12-21 17:23:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":202}' # _entry.id 7VYG # _exptl.entry_id 7VYG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 FA N N ? 31 GA N N ? 31 JA N N ? 31 TA N N ? 31 UA N N ? 31 XA N N ? 31 YA N N ? 31 BB N N ? 31 CB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 7VYG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 30 PEE U 1 401 401 PEE PEE . FA 31 CDL V 1 201 201 CDL CDL . GA 31 CDL V 1 202 203 CDL CDL . HA 30 PEE W 1 201 202 PEE PEE . IA 32 8Q1 X 1 201 201 8Q1 8Q1 . JA 31 CDL a 1 201 201 CDL CDL . KA 33 PLX a 1 202 101 PLX PLX . LA 33 PLX e 1 201 201 PLX PLX . MA 30 PEE f 1 101 101 PEE PEE . NA 33 PLX g 1 201 705 PLX PLX . OA 30 PEE j 1 201 101 PEE PEE . PA 30 PEE j 1 202 201 PEE PEE . QA 33 PLX j 1 203 202 PLX PLX . RA 33 PLX j 1 204 203 PLX PLX . SA 30 PEE l 1 701 207 PEE PEE . TA 31 CDL l 1 702 712 CDL CDL . UA 31 CDL l 1 703 713 CDL CDL . VA 30 PEE l 1 704 719 PEE PEE . WA 30 PEE l 1 705 720 PEE PEE . XA 31 CDL m 1 201 101 CDL CDL . YA 31 CDL n 1 101 102 CDL CDL . ZA 30 PEE r 1 501 202 PEE PEE . AB 33 PLX r 1 502 205 PLX PLX . BB 31 CDL r 1 503 714 CDL CDL . CB 31 CDL s 1 401 201 CDL CDL . DB 34 UQ s 1 402 402 UQ UQ . EB 30 PEE v 1 201 101 PEE PEE . FB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . GA 31 172.4 199.518 137.43 1 41.93 ? C1 CDL 202 V 1 HETATM 2 O O1 CDL . . . GA 31 173.404 199.132 138.321 1 41.93 ? O1 CDL 202 V 1 HETATM 3 C CA2 CDL . . . GA 31 171.992 200.974 137.769 1 41.93 ? CA2 CDL 202 V 1 HETATM 4 O OA2 CDL . . . GA 31 170.628 201.14 137.411 1 41.93 ? OA2 CDL 202 V 1 HETATM 5 P PA1 CDL . . . GA 31 170.137 202.603 136.804 1 41.93 ? PA1 CDL 202 V 1 HETATM 6 O OA3 CDL . . . GA 31 168.639 202.715 136.94 1 41.93 ? OA3 CDL 202 V 1 HETATM 7 O OA4 CDL . . . GA 31 170.798 203.714 137.564 1 41.93 ? OA4 CDL 202 V 1 HETATM 8 O OA5 CDL . . . GA 31 170.552 202.715 135.201 1 41.93 ? OA5 CDL 202 V 1 HETATM 9 C CA3 CDL . . . GA 31 169.773 202.009 134.25 1 41.93 ? CA3 CDL 202 V 1 HETATM 10 C CA4 CDL . . . GA 31 169.232 203.004 133.235 1 41.93 ? CA4 CDL 202 V 1 HETATM 11 O OA6 CDL . . . GA 31 169.965 202.916 132.044 1 41.93 ? OA6 CDL 202 V 1 HETATM 12 C CA5 CDL . . . GA 31 169.172 202.58 130.914 1 41.93 ? CA5 CDL 202 V 1 HETATM 13 O OA7 CDL . . . GA 31 168.076 202.139 131.066 1 41.93 ? OA7 CDL 202 V 1 HETATM 14 C C11 CDL . . . GA 31 169.731 202.791 129.473 1 41.93 ? C11 CDL 202 V 1 HETATM 15 C C12 CDL . . . GA 31 168.753 202.314 128.391 1 41.93 ? C12 CDL 202 V 1 HETATM 16 C C13 CDL . . . GA 31 169.272 202.55 126.973 1 41.93 ? C13 CDL 202 V 1 HETATM 17 C C14 CDL . . . GA 31 170.218 203.763 126.872 1 41.93 ? C14 CDL 202 V 1 HETATM 18 C C15 CDL . . . GA 31 171.649 203.362 126.408 1 41.93 ? C15 CDL 202 V 1 HETATM 19 C C16 CDL . . . GA 31 171.639 202.516 125.111 1 41.93 ? C16 CDL 202 V 1 HETATM 20 C C17 CDL . . . GA 31 172.221 203.3 123.896 1 41.93 ? C17 CDL 202 V 1 HETATM 21 C C18 CDL . . . GA 31 173.257 202.465 123.102 1 41.93 ? C18 CDL 202 V 1 HETATM 22 C C19 CDL . . . GA 31 174.159 203.348 122.195 1 41.93 ? C19 CDL 202 V 1 HETATM 23 C C20 CDL . . . GA 31 173.841 203.181 120.689 1 41.93 ? C20 CDL 202 V 1 HETATM 24 C C21 CDL . . . GA 31 174.946 203.797 119.791 1 41.93 ? C21 CDL 202 V 1 HETATM 25 C C22 CDL . . . GA 31 174.865 203.306 118.318 1 41.93 ? C22 CDL 202 V 1 HETATM 26 C C23 CDL . . . GA 31 176.142 203.657 117.52 1 41.93 ? C23 CDL 202 V 1 HETATM 27 C C24 CDL . . . GA 31 176.339 205.188 117.376 1 41.93 ? C24 CDL 202 V 1 HETATM 28 C C25 CDL . . . GA 31 177.825 205.579 117.285 1 41.93 ? C25 CDL 202 V 1 HETATM 29 C C26 CDL . . . GA 31 178.018 207.103 117.11 1 41.93 ? C26 CDL 202 V 1 HETATM 30 C C27 CDL . . . GA 31 177.233 207.907 118.151 1 41.93 ? C27 CDL 202 V 1 HETATM 31 C CA6 CDL . . . GA 31 169.34 204.434 133.798 1 41.93 ? CA6 CDL 202 V 1 HETATM 32 O OA8 CDL . . . GA 31 170.36 205.113 133.096 1 41.93 ? OA8 CDL 202 V 1 HETATM 33 C CA7 CDL . . . GA 31 171.454 205.527 133.916 1 41.93 ? CA7 CDL 202 V 1 HETATM 34 O OA9 CDL . . . GA 31 171.385 205.433 135.093 1 41.93 ? OA9 CDL 202 V 1 HETATM 35 C C31 CDL . . . GA 31 172.723 206.109 133.265 1 41.93 ? C31 CDL 202 V 1 HETATM 36 C C32 CDL . . . GA 31 172.486 206.54 131.82 1 41.93 ? C32 CDL 202 V 1 HETATM 37 C C33 CDL . . . GA 31 172.998 205.503 130.811 1 41.93 ? C33 CDL 202 V 1 HETATM 38 C C34 CDL . . . GA 31 172.185 205.524 129.496 1 41.93 ? C34 CDL 202 V 1 HETATM 39 C C35 CDL . . . GA 31 172.586 206.699 128.565 1 41.93 ? C35 CDL 202 V 1 HETATM 40 C C36 CDL . . . GA 31 173.917 206.437 127.821 1 41.93 ? C36 CDL 202 V 1 HETATM 41 C C37 CDL . . . GA 31 174.02 207.224 126.503 1 41.93 ? C37 CDL 202 V 1 HETATM 42 C C38 CDL . . . GA 31 174.791 208.541 126.666 1 41.93 ? C38 CDL 202 V 1 HETATM 43 C C39 CDL . . . GA 31 175.971 208.69 125.682 1 41.93 ? C39 CDL 202 V 1 HETATM 44 C C40 CDL . . . GA 31 176.028 207.569 124.618 1 41.93 ? C40 CDL 202 V 1 HETATM 45 C C41 CDL . . . GA 31 177.485 207.035 124.387 1 41.93 ? C41 CDL 202 V 1 HETATM 46 C C42 CDL . . . GA 31 178.519 208.178 124.197 1 41.93 ? C42 CDL 202 V 1 HETATM 47 C C43 CDL . . . GA 31 178.335 208.933 122.848 1 41.93 ? C43 CDL 202 V 1 HETATM 48 C C44 CDL . . . GA 31 179.595 208.844 121.944 1 41.93 ? C44 CDL 202 V 1 HETATM 49 C C45 CDL . . . GA 31 179.4 209.567 120.613 1 41.93 ? C45 CDL 202 V 1 HETATM 50 C C46 CDL . . . GA 31 180.437 209.149 119.552 1 41.93 ? C46 CDL 202 V 1 HETATM 51 C C47 CDL . . . GA 31 180.533 210.158 118.411 1 41.93 ? C47 CDL 202 V 1 HETATM 52 C CB2 CDL . . . GA 31 171.209 198.507 137.568 1 41.93 ? CB2 CDL 202 V 1 HETATM 53 O OB2 CDL . . . GA 31 171.116 197.755 136.365 1 41.93 ? OB2 CDL 202 V 1 HETATM 54 P PB2 CDL . . . GA 31 171.046 196.081 136.465 1 41.93 ? PB2 CDL 202 V 1 HETATM 55 O OB3 CDL . . . GA 31 170.791 195.671 137.904 1 41.93 ? OB3 CDL 202 V 1 HETATM 56 O OB4 CDL . . . GA 31 169.934 195.558 135.586 1 41.93 ? OB4 CDL 202 V 1 HETATM 57 O OB5 CDL . . . GA 31 172.504 195.438 135.947 1 41.93 ? OB5 CDL 202 V 1 HETATM 58 C CB3 CDL . . . GA 31 172.549 194.84 134.658 1 41.93 ? CB3 CDL 202 V 1 HETATM 59 C CB4 CDL . . . GA 31 173.662 195.514 133.844 1 41.93 ? CB4 CDL 202 V 1 HETATM 60 O OB6 CDL . . . GA 31 173.146 196.632 133.167 1 41.93 ? OB6 CDL 202 V 1 HETATM 61 C CB5 CDL . . . GA 31 173.629 197.873 133.664 1 41.93 ? CB5 CDL 202 V 1 HETATM 62 O OB7 CDL . . . GA 31 173.736 198.038 134.832 1 41.93 ? OB7 CDL 202 V 1 HETATM 63 C C51 CDL . . . GA 31 174.02 198.996 132.684 1 41.93 ? C51 CDL 202 V 1 HETATM 64 C C52 CDL . . . GA 31 173.129 199.002 131.432 1 41.93 ? C52 CDL 202 V 1 HETATM 65 C C53 CDL . . . GA 31 172.965 200.409 130.841 1 41.93 ? C53 CDL 202 V 1 HETATM 66 C C54 CDL . . . GA 31 174.321 201.053 130.483 1 41.93 ? C54 CDL 202 V 1 HETATM 67 C C55 CDL . . . GA 31 174.525 201.185 128.966 1 41.93 ? C55 CDL 202 V 1 HETATM 68 C C56 CDL . . . GA 31 175.927 201.748 128.616 1 41.93 ? C56 CDL 202 V 1 HETATM 69 C C57 CDL . . . GA 31 176.483 201.173 127.297 1 41.93 ? C57 CDL 202 V 1 HETATM 70 C C58 CDL . . . GA 31 176.617 202.258 126.201 1 41.93 ? C58 CDL 202 V 1 HETATM 71 C C59 CDL . . . GA 31 177.301 201.726 124.916 1 41.93 ? C59 CDL 202 V 1 HETATM 72 C C60 CDL . . . GA 31 176.877 200.289 124.557 1 41.93 ? C60 CDL 202 V 1 HETATM 73 C C61 CDL . . . GA 31 177.022 199.999 123.038 1 41.93 ? C61 CDL 202 V 1 HETATM 74 C C62 CDL . . . GA 31 178.269 199.155 122.699 1 41.93 ? C62 CDL 202 V 1 HETATM 75 C C63 CDL . . . GA 31 177.978 197.647 122.722 1 41.93 ? C63 CDL 202 V 1 HETATM 76 C C64 CDL . . . GA 31 178.374 196.951 121.41 1 41.93 ? C64 CDL 202 V 1 HETATM 77 C C65 CDL . . . GA 31 177.455 195.783 121.071 1 41.93 ? C65 CDL 202 V 1 HETATM 78 C C66 CDL . . . GA 31 176.004 196.215 120.884 1 41.93 ? C66 CDL 202 V 1 HETATM 79 C C67 CDL . . . GA 31 175.331 195.505 119.71 1 41.93 ? C67 CDL 202 V 1 HETATM 80 C CB6 CDL . . . GA 31 174.213 194.525 132.825 1 41.93 ? CB6 CDL 202 V 1 HETATM 81 O OB8 CDL . . . GA 31 173.936 195.012 131.515 1 41.93 ? OB8 CDL 202 V 1 HETATM 82 C CB7 CDL . . . GA 31 175.045 195.632 130.893 1 41.93 ? CB7 CDL 202 V 1 HETATM 83 O OB9 CDL . . . GA 31 176.114 195.583 131.402 1 41.93 ? OB9 CDL 202 V 1 HETATM 84 C C71 CDL . . . GA 31 174.88 196.361 129.541 1 41.93 ? C71 CDL 202 V 1 HETATM 85 C C72 CDL . . . GA 31 176.158 196.258 128.699 1 41.93 ? C72 CDL 202 V 1 HETATM 86 C C73 CDL . . . GA 31 176.713 197.635 128.306 1 41.93 ? C73 CDL 202 V 1 HETATM 87 C C74 CDL . . . GA 31 177.538 197.574 127.013 1 41.93 ? C74 CDL 202 V 1 HETATM 88 C C75 CDL . . . GA 31 178.952 196.979 127.247 1 41.93 ? C75 CDL 202 V 1 HETATM 89 C C76 CDL . . . GA 31 179.959 197.43 126.159 1 41.93 ? C76 CDL 202 V 1 HETATM 90 C C77 CDL . . . GA 31 181.347 197.804 126.755 1 41.93 ? C77 CDL 202 V 1 HETATM 91 C C78 CDL . . . GA 31 182.33 196.627 126.724 1 41.93 ? C78 CDL 202 V 1 HETATM 92 C C79 CDL . . . GA 31 182.469 196.001 125.322 1 41.93 ? C79 CDL 202 V 1 HETATM 93 C C80 CDL . . . GA 31 183.406 196.827 124.408 1 41.93 ? C80 CDL 202 V 1 HETATM 94 C C81 CDL . . . GA 31 184.704 197.217 125.114 1 41.93 ? C81 CDL 202 V 1 HETATM 95 C C82 CDL . . . GA 31 185.681 196.015 125.25 1 41.93 ? C82 CDL 202 V 1 HETATM 96 C C83 CDL . . . GA 31 186.167 195.511 123.879 1 41.93 ? C83 CDL 202 V 1 HETATM 97 C C84 CDL . . . GA 31 186.724 196.659 123.004 1 41.93 ? C84 CDL 202 V 1 HETATM 98 C C85 CDL . . . GA 31 188.199 196.444 122.623 1 41.93 ? C85 CDL 202 V 1 HETATM 99 C C86 CDL . . . GA 31 188.365 195.303 121.618 1 41.93 ? C86 CDL 202 V 1 HETATM 100 C C87 CDL . . . GA 31 189.776 194.719 121.641 1 41.93 ? C87 CDL 202 V 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 107 _model_server_stats.query_time_ms 590 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 100 #