data_7VYG # _model_server_result.job_id 2MI7Mf146DTFxVgh3eH9HA _model_server_result.datetime_utc '2024-12-21 17:14:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7vyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"RA","auth_seq_id":204}' # _entry.id 7VYG # _exptl.entry_id 7VYG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 767.132 _entity.id 33 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7VYG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 33 KA N N ? 33 LA N N ? 33 NA N N ? 33 QA N N ? 33 RA N N ? 33 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 17 V CYS 18 1_555 D SG CYS 74 V CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 L SG CYS 112 d CYS 113 1_555 L SG CYS 124 d CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 AA SG CYS 45 u CYS 46 1_555 AA SG CYS 55 u CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 AA SG CYS 77 u CYS 78 1_555 AA SG CYS 109 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 AA SG CYS 87 u CYS 88 1_555 AA SG CYS 99 u CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C42 H89 N O8 P 1' _chem_comp.formula_weight 767.132 _chem_comp.id PLX _chem_comp.mon_nstd_flag . _chem_comp.name (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7VYG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PEE Q 1 101 718 PEE PEE . EA 30 PEE U 1 401 401 PEE PEE . FA 31 CDL V 1 201 201 CDL CDL . GA 31 CDL V 1 202 203 CDL CDL . HA 30 PEE W 1 201 202 PEE PEE . IA 32 8Q1 X 1 201 201 8Q1 8Q1 . JA 31 CDL a 1 201 201 CDL CDL . KA 33 PLX a 1 202 101 PLX PLX . LA 33 PLX e 1 201 201 PLX PLX . MA 30 PEE f 1 101 101 PEE PEE . NA 33 PLX g 1 201 705 PLX PLX . OA 30 PEE j 1 201 101 PEE PEE . PA 30 PEE j 1 202 201 PEE PEE . QA 33 PLX j 1 203 202 PLX PLX . RA 33 PLX j 1 204 203 PLX PLX . SA 30 PEE l 1 701 207 PEE PEE . TA 31 CDL l 1 702 712 CDL CDL . UA 31 CDL l 1 703 713 CDL CDL . VA 30 PEE l 1 704 719 PEE PEE . WA 30 PEE l 1 705 720 PEE PEE . XA 31 CDL m 1 201 101 CDL CDL . YA 31 CDL n 1 101 102 CDL CDL . ZA 30 PEE r 1 501 202 PEE PEE . AB 33 PLX r 1 502 205 PLX PLX . BB 31 CDL r 1 503 714 CDL CDL . CB 31 CDL s 1 401 201 CDL CDL . DB 34 UQ s 1 402 402 UQ UQ . EB 30 PEE v 1 201 101 PEE PEE . FB 35 ADP w 1 401 401 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C23 PLX . . . RA 33 177.102 127.795 109.835 1 34.86 ? C23 PLX 204 j 1 HETATM 2 C C22 PLX . . . RA 33 176.793 127.082 111.186 1 34.86 ? C22 PLX 204 j 1 HETATM 3 C C21 PLX . . . RA 33 175.388 126.396 111.192 1 34.86 ? C21 PLX 204 j 1 HETATM 4 C C20 PLX . . . RA 33 174.997 125.856 112.608 1 34.86 ? C20 PLX 204 j 1 HETATM 5 C C19 PLX . . . RA 33 174.71 127.014 113.622 1 34.86 ? C19 PLX 204 j 1 HETATM 6 C C18 PLX . . . RA 33 173.256 126.938 114.223 1 34.86 ? C18 PLX 204 j 1 HETATM 7 C C17 PLX . . . RA 33 172.697 128.356 114.641 1 34.86 ? C17 PLX 204 j 1 HETATM 8 C C16 PLX . . . RA 33 171.616 128.888 113.638 1 34.86 ? C16 PLX 204 j 1 HETATM 9 C C15 PLX . . . RA 33 170.21 128.208 113.853 1 34.86 ? C15 PLX 204 j 1 HETATM 10 C C14 PLX . . . RA 33 169.878 127.14 112.754 1 34.86 ? C14 PLX 204 j 1 HETATM 11 C C13 PLX . . . RA 33 170.557 127.465 111.371 1 34.86 ? C13 PLX 204 j 1 HETATM 12 C C12 PLX . . . RA 33 170.236 126.385 110.283 1 34.86 ? C12 PLX 204 j 1 HETATM 13 C C11 PLX . . . RA 33 169.408 126.958 109.082 1 34.86 ? C11 PLX 204 j 1 HETATM 14 C C10 PLX . . . RA 33 168.115 126.125 108.812 1 34.86 ? C10 PLX 204 j 1 HETATM 15 C C9 PLX . . . RA 33 166.973 126.987 108.163 1 34.86 ? C9 PLX 204 j 1 HETATM 16 C C8 PLX . . . RA 33 165.774 126.107 107.641 1 34.86 ? C8 PLX 204 j 1 HETATM 17 C C7 PLX . . . RA 33 165.626 126.132 106.069 1 34.86 ? C7 PLX 204 j 1 HETATM 18 C C6 PLX . . . RA 33 166.455 125.013 105.381 1 34.86 ? C6 PLX 204 j 1 HETATM 19 O O7 PLX . . . RA 33 167.079 124.247 106.342 1 34.86 ? O7 PLX 204 j 1 HETATM 20 O O6 PLX . . . RA 33 165.62 124.198 104.565 1 34.86 ? O6 PLX 204 j 1 HETATM 21 C C4 PLX . . . RA 33 164.465 123.684 105.187 1 34.86 ? C4 PLX 204 j 1 HETATM 22 C C3 PLX . . . RA 33 163.311 123.648 104.174 1 34.86 ? C3 PLX 204 j 1 HETATM 23 O O4 PLX . . . RA 33 163.266 122.336 103.601 1 34.86 ? O4 PLX 204 j 1 HETATM 24 P P1 PLX . . . RA 33 162.072 121.967 102.483 1 34.86 ? P1 PLX 204 j 1 HETATM 25 O O1 PLX . . . RA 33 161.618 123.341 101.645 1 34.86 ? O1 PLX 204 j 1 HETATM 26 C C2 PLX . . . RA 33 160.401 123.994 102.023 1 34.86 ? C2 PLX 204 j 1 HETATM 27 C C1 PLX . . . RA 33 160.056 125.083 100.949 1 34.86 ? C1 PLX 204 j 1 HETATM 28 N N1 PLX . . . RA 33 159.184 124.514 99.867 1 34.86 ? N1 PLX 204 j 1 HETATM 29 C C1C PLX . . . RA 33 157.882 124.202 100.49 1 34.86 ? C1C PLX 204 j 1 HETATM 30 C C1B PLX . . . RA 33 159.034 125.583 98.835 1 34.86 ? C1B PLX 204 j 1 HETATM 31 C C1A PLX . . . RA 33 159.616 123.289 99.147 1 34.86 ? C1A PLX 204 j 1 HETATM 32 O O2 PLX . . . RA 33 160.862 121.391 103.185 1 34.86 ? O2 PLX 204 j 1 HETATM 33 C C5 PLX . . . RA 33 164.73 122.251 105.685 1 34.86 ? C5 PLX 204 j 1 HETATM 34 O O8 PLX . . . RA 33 164.249 122.143 107.025 1 34.86 ? O8 PLX 204 j 1 HETATM 35 C C24 PLX . . . RA 33 164.472 120.875 107.601 1 34.86 ? C24 PLX 204 j 1 HETATM 36 O O9 PLX . . . RA 33 163.451 120.578 108.495 1 34.86 ? O9 PLX 204 j 1 HETATM 37 C C25 PLX . . . RA 33 165.829 120.885 108.337 1 34.86 ? C25 PLX 204 j 1 HETATM 38 C C26 PLX . . . RA 33 166.003 122.139 109.252 1 34.86 ? C26 PLX 204 j 1 HETATM 39 C C27 PLX . . . RA 33 165.426 121.911 110.683 1 34.86 ? C27 PLX 204 j 1 HETATM 40 C C28 PLX . . . RA 33 166.536 121.985 111.785 1 34.86 ? C28 PLX 204 j 1 HETATM 41 C C29 PLX . . . RA 33 166.169 121.15 113.055 1 34.86 ? C29 PLX 204 j 1 HETATM 42 C C30 PLX . . . RA 33 166.459 121.928 114.393 1 34.86 ? C30 PLX 204 j 1 HETATM 43 C C31 PLX . . . RA 33 167.627 122.972 114.24 1 34.86 ? C31 PLX 204 j 1 HETATM 44 C C32 PLX . . . RA 33 167.737 123.926 115.494 1 34.86 ? C32 PLX 204 j 1 HETATM 45 C C33 PLX . . . RA 33 169.23 124.114 115.982 1 34.86 ? C33 PLX 204 j 1 HETATM 46 C C34 PLX . . . RA 33 169.56 125.621 116.321 1 34.86 ? C34 PLX 204 j 1 HETATM 47 C C35 PLX . . . RA 33 168.29 126.4 116.868 1 34.86 ? C35 PLX 204 j 1 HETATM 48 C C36 PLX . . . RA 33 168.544 127.049 118.274 1 34.86 ? C36 PLX 204 j 1 HETATM 49 C C37 PLX . . . RA 33 169.023 125.993 119.333 1 34.86 ? C37 PLX 204 j 1 HETATM 50 C C38 PLX . . . RA 33 167.971 124.86 119.561 1 34.86 ? C38 PLX 204 j 1 HETATM 51 C C39 PLX . . . RA 33 168.294 124.008 120.815 1 34.86 ? C39 PLX 204 j 1 HETATM 52 O O3 PLX . . . RA 33 162.606 120.939 101.506 1 34.86 ? O3 PLX 204 j 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 52 #